==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=20-JUL-2011 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER DNA BINDING PROTEIN/DNA 03-APR-09 3GYH . COMPND 2 MOLECULE: ALKYLTRANSFERASE-LIKE PROTEIN 1; . SOURCE 2 ORGANISM_SCIENTIFIC: SCHIZOSACCHAROMYCES POMBE; . AUTHOR J.L.TUBBS,A.S.ARVAI,J.A.TAINER,D.S.SHIN . 108 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 6755.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 69 63.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 3 2.8 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 4 3.7 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 1 0.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 6 5.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 21 19.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 31 28.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 2 1.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 1 0 1 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 X M 0 0 113 0, 0.0 2,-0.1 0, 0.0 3,-0.0 0.000 360.0 360.0 360.0 107.8 38.3 -23.7 21.5 2 2 X R >> - 0 0 140 1,-0.1 4,-2.2 4,-0.0 3,-0.7 -0.341 360.0-115.3 -64.2 158.0 34.7 -23.9 22.8 3 3 X M H 3> S+ 0 0 85 1,-0.3 4,-3.2 2,-0.2 5,-0.2 0.938 116.3 62.2 -65.4 -43.0 32.1 -24.3 20.0 4 4 X D H 3> S+ 0 0 97 1,-0.2 4,-1.0 2,-0.2 -1,-0.3 0.785 108.8 47.4 -51.4 -26.6 30.6 -20.9 20.7 5 5 X E H X> S+ 0 0 66 -3,-0.7 4,-2.3 2,-0.2 3,-1.0 0.973 107.5 50.5 -77.2 -65.4 34.0 -19.7 19.7 6 6 X F H 3X S+ 0 0 1 -4,-2.2 4,-2.4 1,-0.3 5,-0.3 0.892 109.1 57.2 -30.7 -56.3 34.4 -21.9 16.5 7 7 X Y H 3X S+ 0 0 44 -4,-3.2 4,-2.2 1,-0.2 -1,-0.3 0.870 109.3 41.6 -51.8 -47.0 31.0 -20.5 15.5 8 8 X T H < S+ 0 0 96 -4,-3.6 3,-0.7 1,-0.2 4,-0.3 0.954 115.2 47.1 -48.1 -58.1 33.8 -13.6 11.0 13 13 X A H >< S+ 0 0 4 -4,-3.2 3,-3.1 1,-0.3 -2,-0.2 0.928 110.5 49.5 -45.9 -60.2 35.6 -15.6 8.3 14 14 X V H >< S+ 0 0 0 -4,-3.6 3,-1.1 1,-0.3 -1,-0.3 0.773 104.5 62.1 -56.6 -26.2 32.5 -16.2 6.1 15 15 X C T << S+ 0 0 64 -4,-2.0 -1,-0.3 -3,-0.7 -2,-0.2 0.516 90.5 69.0 -79.1 -5.8 31.9 -12.5 6.4 16 16 X E T < S+ 0 0 94 -3,-3.1 -1,-0.3 -4,-0.3 -2,-0.2 0.203 71.6 111.1 -97.4 13.8 35.1 -11.7 4.7 17 17 X I < - 0 0 5 -3,-1.1 3,-0.1 89,-0.1 6,-0.1 -0.789 67.0-129.2 -88.5 128.2 33.9 -13.0 1.3 18 18 X P > - 0 0 49 0, 0.0 3,-1.7 0, 0.0 -2,-0.1 -0.366 34.6 -81.4 -74.1 153.0 33.5 -10.3 -1.3 19 19 X Y T 3 S+ 0 0 144 1,-0.2 3,-0.1 -2,-0.1 63,-0.0 -0.228 119.2 13.9 -42.1 134.3 30.3 -9.7 -3.3 20 20 X G T 3 S+ 0 0 13 1,-0.2 2,-0.3 -3,-0.1 -1,-0.2 0.197 109.0 97.6 77.6 -19.7 30.4 -12.1 -6.3 21 21 X K < - 0 0 102 -3,-1.7 2,-0.3 83,-0.1 -1,-0.2 -0.687 55.0-165.8 -85.7 153.5 33.2 -14.3 -4.8 22 22 X V - 0 0 0 -2,-0.3 84,-3.3 79,-0.2 2,-0.2 -0.824 6.8-161.0-123.9 173.9 32.6 -17.5 -2.9 23 23 X S E -a 59 0A 2 35,-2.9 37,-1.9 -2,-0.3 2,-0.4 -0.791 19.7-105.8-138.6-164.5 34.4 -19.9 -0.7 24 24 X T E > -a 60 0A 4 35,-0.2 4,-2.3 -2,-0.2 5,-0.4 -0.965 18.7-122.2-137.5 134.0 34.1 -23.5 0.6 25 25 X Y H > S+ 0 0 45 35,-1.7 4,-2.2 -2,-0.4 5,-0.2 0.875 115.1 47.1 -29.7 -64.5 33.1 -25.3 3.8 26 26 X G H > S+ 0 0 7 1,-0.2 4,-1.8 2,-0.2 -1,-0.2 0.902 111.5 48.3 -47.1 -56.0 36.5 -27.0 3.9 27 27 X E H >> S+ 0 0 74 1,-0.3 4,-3.7 2,-0.2 3,-0.8 0.945 111.4 48.0 -59.3 -52.3 38.6 -23.9 3.2 28 28 X I H 3X S+ 0 0 1 -4,-2.3 4,-1.5 1,-0.3 -1,-0.3 0.842 109.1 55.8 -59.4 -34.0 36.9 -21.7 5.8 29 29 X A H 3<>S+ 0 0 0 -4,-2.2 5,-2.6 -5,-0.4 -1,-0.3 0.840 113.7 40.5 -63.7 -34.1 37.3 -24.6 8.2 30 30 X R H X<5S+ 0 0 106 -4,-1.8 3,-4.3 -3,-0.8 -2,-0.2 0.961 107.1 62.6 -72.0 -55.4 41.0 -24.5 7.4 31 31 X Y H 3<5S+ 0 0 112 -4,-3.7 -2,-0.2 1,-0.3 -3,-0.2 0.758 107.3 43.8 -41.2 -39.4 41.2 -20.7 7.4 32 32 X V T 3<5S- 0 0 24 -4,-1.5 -1,-0.3 -5,-0.2 -2,-0.2 0.393 125.8-102.0 -92.5 0.1 40.2 -20.5 11.1 33 33 X G T < 5S+ 0 0 49 -3,-4.3 -3,-0.2 -5,-0.1 -2,-0.2 0.847 92.2 107.3 85.7 38.2 42.5 -23.4 12.0 34 34 X M > < + 0 0 39 -5,-2.6 3,-2.8 -4,-0.1 -4,-0.1 -0.437 36.8 173.9-135.6 62.9 40.3 -26.4 12.2 35 35 X P T 3 S+ 0 0 95 0, 0.0 3,-0.4 0, 0.0 -5,-0.2 0.743 77.2 54.0 -56.1 -25.4 41.0 -28.4 9.1 36 36 X S T 3 S+ 0 0 98 1,-0.2 3,-0.2 -7,-0.1 4,-0.2 0.283 90.5 84.2 -85.0 14.1 38.8 -31.3 10.1 37 37 X Y <> + 0 0 71 -3,-2.8 4,-2.4 -11,-0.2 -1,-0.2 0.021 41.5 117.4-110.8 30.2 35.7 -29.2 10.7 38 38 X A H > S+ 0 0 35 -3,-0.4 4,-2.2 1,-0.2 3,-0.2 0.965 80.3 52.0 -67.3 -48.5 34.1 -28.7 7.3 39 39 X R H >> S+ 0 0 216 1,-0.2 4,-1.8 -3,-0.2 3,-0.7 0.954 111.6 47.5 -42.2 -56.4 31.0 -30.5 8.5 40 40 X Q H 3> S+ 0 0 59 1,-0.3 4,-2.3 2,-0.3 -1,-0.2 0.802 102.9 61.1 -67.1 -27.0 30.8 -28.1 11.5 41 41 X V H 3X S+ 0 0 0 -4,-2.4 4,-1.5 1,-0.2 -1,-0.3 0.930 108.4 46.4 -60.1 -40.0 31.4 -25.1 9.3 42 42 X G H < S+ 0 0 21 -4,-1.5 3,-1.0 1,-0.3 -2,-0.2 0.947 110.7 53.1 -67.7 -48.0 25.7 -21.9 8.5 46 46 X K H 3< S+ 0 0 127 -4,-3.2 -1,-0.3 1,-0.3 -2,-0.2 0.755 104.0 63.0 -52.9 -25.2 22.7 -24.1 9.0 47 47 X H T 3< S+ 0 0 111 -4,-1.0 2,-0.4 -3,-0.4 -1,-0.3 -0.132 81.9 109.3 -98.3 36.1 22.4 -22.5 12.4 48 48 X L S < S- 0 0 35 -3,-1.0 -3,-0.0 -2,-0.2 -4,-0.0 -0.905 70.5-112.0-122.3 140.1 21.7 -18.9 11.4 49 49 X H > - 0 0 135 -2,-0.4 3,-2.5 1,-0.1 -2,-0.1 -0.435 27.1-126.2 -64.7 137.1 18.7 -16.7 11.6 50 50 X P T 3 S+ 0 0 104 0, 0.0 -1,-0.1 0, 0.0 -2,-0.0 0.754 112.4 61.7 -53.4 -26.5 17.3 -15.8 8.1 51 51 X E T 3 S+ 0 0 136 2,-0.1 -2,-0.1 0, 0.0 -3,-0.0 0.673 79.3 127.7 -73.5 -19.3 17.6 -12.2 9.2 52 52 X T < - 0 0 38 -3,-2.5 2,-0.1 1,-0.1 4,-0.1 0.054 58.9-143.5 -41.7 143.3 21.4 -12.6 9.6 53 53 X H + 0 0 191 2,-0.1 -1,-0.1 3,-0.0 -2,-0.1 -0.315 64.1 115.7-104.8 47.2 23.6 -10.1 7.8 54 54 X V S S- 0 0 24 -2,-0.1 2,-3.5 0, 0.0 3,-0.3 -0.960 75.7-119.4-127.0 136.9 26.1 -12.8 6.9 55 55 X P > + 0 0 11 0, 0.0 3,-2.8 0, 0.0 -2,-0.1 -0.154 52.6 151.3 -76.7 50.9 27.1 -14.0 3.5 56 56 X W G > + 0 0 48 -2,-3.5 3,-0.8 1,-0.3 -11,-0.1 0.748 67.0 64.6 -53.2 -23.6 26.0 -17.6 4.2 57 57 X H G 3 S+ 0 0 21 -3,-0.3 -1,-0.3 1,-0.2 25,-0.1 0.704 86.5 71.3 -73.5 -17.7 25.2 -17.9 0.5 58 58 X R G < S+ 0 0 34 -3,-2.8 -35,-2.9 1,-0.1 2,-0.4 0.091 82.5 83.7 -88.8 25.3 28.9 -17.4 -0.4 59 59 X V E < +a 23 0A 1 -3,-0.8 -35,-0.2 -37,-0.2 -1,-0.1 -0.822 51.1 152.0-136.9 92.1 29.8 -20.9 0.9 60 60 X I E -a 24 0A 0 -37,-1.9 -35,-1.7 -2,-0.4 2,-0.2 -0.217 47.0 -71.2-103.0-163.6 29.3 -23.9 -1.3 61 61 X N > - 0 0 17 4,-2.8 3,-1.8 -37,-0.2 4,-0.2 -0.612 34.2-114.8-100.9 159.5 31.1 -27.3 -1.5 62 62 X S T 3 S+ 0 0 82 1,-0.3 -1,-0.1 -2,-0.2 39,-0.1 0.748 113.8 70.8 -65.2 -21.9 34.6 -28.1 -2.6 63 63 X R T 3 S- 0 0 134 2,-0.1 -1,-0.3 1,-0.1 3,-0.1 0.215 120.1-111.9 -73.9 15.8 33.0 -30.1 -5.5 64 64 X G S < S+ 0 0 4 -3,-1.8 35,-1.7 1,-0.2 2,-0.2 0.513 80.8 104.9 70.1 6.7 32.1 -26.6 -6.7 65 65 X T B S-B 98 0B 0 33,-0.2 -4,-2.8 -4,-0.2 2,-0.4 -0.695 77.2 -95.9-120.5 170.9 28.4 -27.0 -6.2 66 66 X I - 0 0 8 31,-2.0 2,-0.2 -2,-0.2 -6,-0.1 -0.699 49.6-116.2 -85.0 133.1 25.5 -26.0 -3.9 67 67 X S - 0 0 24 -2,-0.4 8,-0.1 1,-0.1 -1,-0.1 -0.435 22.6-117.0 -82.3 138.3 24.9 -28.6 -1.3 68 68 X K - 0 0 131 -2,-0.2 2,-0.4 1,-0.1 -1,-0.1 -0.290 31.3-138.2 -69.3 158.5 21.6 -30.5 -1.2 69 69 X R - 0 0 65 1,-0.1 3,-0.3 2,-0.0 5,-0.1 -0.969 27.0-163.3-134.7 125.3 19.5 -30.0 2.0 70 70 X D S S+ 0 0 173 -2,-0.4 -1,-0.1 1,-0.3 3,-0.1 0.342 99.6 71.7 -86.0 2.6 17.5 -32.3 4.2 71 71 X I S S- 0 0 108 1,-0.2 3,-0.5 0, 0.0 -1,-0.3 -0.431 122.6-103.9 -96.2 46.7 16.1 -29.0 5.3 72 72 X S > - 0 0 84 -3,-0.3 3,-0.9 1,-0.2 2,-0.4 0.582 43.8 -62.7 40.4 163.4 14.5 -29.1 1.8 73 73 X A G > S+ 0 0 63 1,-0.3 3,-3.1 2,-0.1 -1,-0.2 0.259 92.3 117.2 -72.9 16.4 15.4 -27.2 -1.3 74 74 X G G > + 0 0 53 -3,-0.5 3,-2.4 -2,-0.4 -1,-0.3 0.756 59.3 83.2 -46.7 -26.5 14.6 -23.9 0.2 75 75 X E G X> + 0 0 12 -3,-0.9 3,-2.5 1,-0.3 4,-0.8 0.607 55.5 98.4 -52.8 -14.7 18.4 -23.4 -0.4 76 76 X Q H <> S+ 0 0 70 -3,-3.1 4,-2.2 1,-0.3 -1,-0.3 0.834 71.4 73.1 -44.8 -29.4 17.2 -22.5 -3.9 77 77 X R H <> S+ 0 0 103 -3,-2.4 4,-3.1 2,-0.2 5,-0.4 0.943 87.0 58.3 -42.1 -55.0 17.8 -19.2 -2.1 78 78 X Q H <> S+ 0 0 1 -3,-2.5 4,-2.9 1,-0.2 5,-0.2 0.929 105.8 47.6 -47.1 -60.1 21.5 -19.9 -2.4 79 79 X K H X S+ 0 0 45 -4,-0.8 4,-2.9 2,-0.2 -1,-0.2 0.927 116.8 43.3 -41.2 -61.1 21.3 -20.1 -6.2 80 80 X D H X S+ 0 0 40 -4,-2.2 4,-2.6 2,-0.2 5,-0.3 0.964 111.6 50.8 -56.7 -60.3 19.3 -16.9 -6.5 81 81 X R H X S+ 0 0 83 -4,-3.1 4,-1.8 1,-0.3 -1,-0.2 0.883 114.0 48.4 -46.8 -42.1 21.3 -14.8 -3.9 82 82 X L H X>S+ 0 0 1 -4,-2.9 4,-1.3 -5,-0.4 5,-1.3 0.927 106.3 55.2 -63.8 -46.4 24.3 -15.9 -5.9 83 83 X E H ><5S+ 0 0 94 -4,-2.9 3,-0.5 1,-0.2 -2,-0.2 0.910 109.1 48.2 -52.3 -46.6 22.7 -15.0 -9.2 84 84 X E H 3<5S+ 0 0 134 -4,-2.6 -1,-0.2 1,-0.2 -2,-0.2 0.864 104.9 59.3 -58.4 -39.7 22.1 -11.4 -7.8 85 85 X E H 3<5S- 0 0 21 -4,-1.8 -1,-0.2 -5,-0.3 -2,-0.2 0.780 128.6-102.4 -60.6 -27.5 25.7 -11.4 -6.7 86 86 X G T <<5 + 0 0 49 -4,-1.3 2,-0.6 -3,-0.5 -3,-0.2 0.731 68.5 153.1 112.8 37.5 26.5 -11.9 -10.4 87 87 X V < - 0 0 4 -5,-1.3 2,-0.5 -8,-0.2 -1,-0.2 -0.855 41.4-137.7-115.4 110.7 27.4 -15.6 -10.5 88 88 X E + 0 0 138 -2,-0.6 12,-0.5 12,-0.1 2,-0.3 -0.513 33.8 172.9 -64.9 115.5 27.0 -17.8 -13.5 89 89 X I - 0 0 30 -2,-0.5 2,-0.3 10,-0.1 10,-0.2 -0.938 10.3-169.7-121.3 148.9 25.5 -21.1 -12.3 90 90 X Y B -C 98 0B 122 8,-2.5 8,-2.2 -2,-0.3 2,-0.2 -0.960 21.6-116.0-134.6 158.0 24.2 -24.0 -14.4 91 91 X Q - 0 0 127 -2,-0.3 5,-0.2 6,-0.2 6,-0.1 -0.581 26.0-162.6 -86.2 152.0 22.3 -27.2 -13.7 92 92 X T > - 0 0 51 -2,-0.2 3,-0.9 0, 0.0 -1,-0.1 -0.026 49.6 -61.0-104.3-144.2 23.8 -30.7 -14.2 93 93 X S T 3 S+ 0 0 126 1,-0.3 -2,-0.0 3,-0.1 0, 0.0 -0.072 143.1 30.3-112.3 31.6 22.1 -34.0 -14.6 94 94 X L T 3 S- 0 0 130 0, 0.0 2,-2.6 0, 0.0 -1,-0.3 -0.190 119.1-107.6-140.2 52.5 20.6 -33.9 -11.3 95 95 X G < + 0 0 21 -3,-0.9 3,-0.2 1,-0.2 -2,-0.1 0.031 55.1 172.9 64.5 -34.8 20.3 -30.1 -11.5 96 96 X E - 0 0 66 -2,-2.6 -1,-0.2 -5,-0.2 -6,-0.1 0.429 40.8-121.7 -7.1 76.5 23.1 -30.1 -8.9 97 97 X Y - 0 0 46 -3,-0.2 -31,-2.0 -6,-0.1 2,-0.4 -0.017 42.3-172.2 -38.6 129.2 23.5 -26.3 -9.2 98 98 X K B -BC 65 90B 72 -8,-2.2 -8,-2.5 -33,-0.2 2,-0.3 -0.973 19.8-177.9-141.5 141.1 27.1 -25.7 -10.3 99 99 X L - 0 0 6 -35,-1.7 2,-1.3 -2,-0.4 -10,-0.1 -0.951 44.3 -90.4-137.1 159.3 29.6 -22.9 -10.8 100 100 X N > - 0 0 81 -12,-0.5 4,-1.5 -2,-0.3 -36,-0.1 -0.536 38.3-165.6 -72.2 95.5 33.2 -22.5 -12.0 101 101 X L T 4 S+ 0 0 31 -2,-1.3 -1,-0.2 1,-0.2 -79,-0.2 0.917 84.2 49.4 -49.2 -55.4 35.0 -22.9 -8.7 102 102 X P T 4 S+ 0 0 91 0, 0.0 3,-0.2 0, 0.0 -1,-0.2 0.918 114.3 47.2 -55.2 -46.7 38.4 -21.6 -10.0 103 103 X E T 4 S+ 0 0 117 1,-0.2 2,-1.1 -82,-0.0 -2,-0.2 0.980 119.7 33.5 -54.4 -82.1 36.7 -18.5 -11.5 104 104 X Y S < S+ 0 0 31 -4,-1.5 2,-0.3 -16,-0.1 -1,-0.2 -0.669 93.0 122.2 -79.0 97.6 34.5 -17.4 -8.7 105 105 X M - 0 0 32 -2,-1.1 -82,-0.2 -3,-0.2 2,-0.1 -0.877 58.4-118.6-165.3 129.2 36.6 -18.3 -5.6 106 106 X W + 0 0 46 -84,-3.3 -82,-0.1 -2,-0.3 -89,-0.1 -0.397 30.7 169.8 -76.6 141.7 38.1 -16.4 -2.7 107 107 X K 0 0 161 -2,-0.1 -1,-0.0 -84,-0.0 -84,-0.0 -0.665 360.0 360.0-156.4 85.6 41.8 -16.3 -2.2 108 108 X P 0 0 124 0, 0.0 -2,-0.1 0, 0.0 0, 0.0 -0.278 360.0 360.0 -58.0 360.0 43.3 -13.9 0.5