==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=29-NOV-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER GLYCOPROTEIN 23-MAY-02 1GZL . COMPND 2 MOLECULE: FUSION PROTEIN BETWEEN THE HYDROPHOBIC POCKET OF . SOURCE 2 SYNTHETIC: YES; . AUTHOR S.K.SIA,P.A.CARR,A.G.COCHRAN,V.M.MALASHKEVICH,P.S.KIM . 114 4 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 11221.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 98 86.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 1 0.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 97 85.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A R > 0 0 257 0, 0.0 4,-0.9 0, 0.0 5,-0.1 0.000 360.0 360.0 360.0 -32.5 12.5 34.3 -35.4 2 2 A M H >> + 0 0 132 2,-0.2 4,-1.6 1,-0.1 3,-0.9 0.982 360.0 47.1 -70.0 -60.1 15.8 36.1 -34.8 3 3 A K H 3> S+ 0 0 133 1,-0.3 4,-1.7 2,-0.2 3,-0.3 0.871 110.8 51.2 -49.7 -47.3 14.2 39.2 -33.3 4 4 A Q H 3> S+ 0 0 122 1,-0.2 4,-1.7 2,-0.2 -1,-0.3 0.807 107.7 53.5 -65.5 -27.3 11.9 37.2 -31.0 5 5 A I H 0 0 229 0, 0.0 4,-2.3 0, 0.0 5,-0.1 0.000 360.0 360.0 360.0 -54.4 17.0 4.7 84.9 48 2 B M H > + 0 0 146 1,-0.2 4,-2.7 2,-0.2 5,-0.2 0.837 360.0 52.5 -56.3 -36.7 20.1 6.8 83.8 49 3 B K H > S+ 0 0 132 2,-0.2 4,-2.5 1,-0.2 -1,-0.2 0.918 107.5 51.7 -65.9 -42.1 21.8 3.7 82.4 50 4 B Q H > S+ 0 0 123 1,-0.2 4,-2.6 2,-0.2 -2,-0.2 0.949 112.3 47.7 -55.4 -49.4 18.7 2.9 80.4 51 5 B I H X S+ 0 0 87 -4,-2.3 4,-1.7 1,-0.2 -2,-0.2 0.892 112.1 46.5 -59.0 -47.0 18.9 6.5 79.1 52 6 B E H X S+ 0 0 107 -4,-2.7 4,-1.8 2,-0.2 -1,-0.2 0.811 110.9 56.6 -67.4 -29.2 22.6 6.3 78.3 53 7 B D H X S+ 0 0 64 -4,-2.5 4,-1.9 -5,-0.2 3,-0.2 0.974 107.9 44.6 -64.6 -54.9 21.8 2.9 76.6 54 8 B K H X S+ 0 0 148 -4,-2.6 4,-2.1 1,-0.2 -2,-0.2 0.811 109.5 58.5 -58.7 -31.4 19.3 4.5 74.3 55 9 B I H X S+ 0 0 80 -4,-1.7 4,-2.8 2,-0.2 -1,-0.2 0.922 104.6 49.3 -66.3 -43.2 21.7 7.3 73.6 56 10 B E H X S+ 0 0 113 -4,-1.8 4,-2.3 -3,-0.2 -2,-0.2 0.942 112.0 48.0 -60.0 -47.5 24.3 5.0 72.3 57 11 B E H X S+ 0 0 123 -4,-1.9 4,-2.1 1,-0.2 -1,-0.2 0.880 113.1 48.1 -62.5 -36.5 21.8 3.2 70.0 58 12 B I H X S+ 0 0 107 -4,-2.1 4,-1.9 2,-0.2 -1,-0.2 0.895 109.8 52.6 -70.7 -38.3 20.6 6.5 68.7 59 13 B E H X S+ 0 0 109 -4,-2.8 4,-1.7 1,-0.2 -2,-0.2 0.876 110.5 48.8 -63.6 -37.5 24.2 7.7 68.1 60 14 B S H X S+ 0 0 50 -4,-2.3 4,-2.6 2,-0.2 -2,-0.2 0.914 111.0 48.0 -69.0 -43.4 24.9 4.6 66.1 61 15 B K H X S+ 0 0 144 -4,-2.1 4,-2.0 1,-0.2 -2,-0.2 0.845 111.7 51.5 -65.6 -31.7 21.7 4.9 64.0 62 16 B Q H X S+ 0 0 110 -4,-1.9 4,-2.3 2,-0.2 -1,-0.2 0.857 109.1 51.0 -70.6 -37.2 22.6 8.6 63.4 63 17 B K H X S+ 0 0 107 -4,-1.7 4,-2.1 2,-0.2 -2,-0.2 0.935 110.6 48.7 -64.1 -47.6 26.1 7.4 62.3 64 18 B K H X S+ 0 0 115 -4,-2.6 4,-2.2 2,-0.2 -2,-0.2 0.885 110.7 50.2 -60.8 -41.9 24.6 4.9 59.9 65 19 B I H X S+ 0 0 99 -4,-2.0 4,-2.2 1,-0.2 -1,-0.2 0.942 108.9 52.4 -61.8 -48.0 22.3 7.5 58.4 66 20 B E H X S+ 0 0 106 -4,-2.3 4,-1.8 1,-0.2 -2,-0.2 0.890 110.2 48.1 -55.5 -43.2 25.2 9.9 58.0 67 21 B N H X S+ 0 0 76 -4,-2.1 4,-1.1 1,-0.2 -1,-0.2 0.890 110.4 50.9 -67.0 -39.5 27.1 7.3 56.1 68 22 B E H X S+ 0 0 77 -4,-2.2 4,-2.6 1,-0.2 -1,-0.2 0.840 107.9 53.4 -67.8 -31.5 24.2 6.4 53.9 69 23 B I H X S+ 0 0 88 -4,-2.2 4,-3.0 2,-0.2 5,-0.2 0.916 103.5 55.8 -67.9 -42.9 23.7 10.0 53.0 70 24 B A H X S+ 0 0 51 -4,-1.8 4,-1.0 1,-0.2 -1,-0.2 0.819 111.3 46.0 -59.5 -29.4 27.3 10.3 51.9 71 25 B R H X S+ 0 0 92 -4,-1.1 4,-2.3 2,-0.2 -2,-0.2 0.925 110.3 50.4 -78.8 -47.2 26.6 7.5 49.5 72 26 B I H X S+ 0 0 83 -4,-2.6 4,-2.5 1,-0.2 -2,-0.2 0.921 110.3 52.7 -55.2 -44.4 23.3 8.9 48.2 73 27 B K H X S+ 0 0 118 -4,-3.0 4,-1.9 1,-0.2 -1,-0.2 0.854 107.4 50.6 -60.8 -36.6 25.2 12.1 47.6 74 28 B K H X S+ 0 0 65 -4,-1.0 4,-1.5 -5,-0.2 -1,-0.2 0.909 111.1 49.6 -68.3 -39.4 27.9 10.3 45.6 75 29 B L H X S+ 0 0 32 -4,-2.3 4,-2.7 2,-0.2 -2,-0.2 0.873 107.4 53.4 -65.5 -40.2 25.1 8.6 43.5 76 30 B L H X S+ 0 0 85 -4,-2.5 4,-3.4 1,-0.2 5,-0.3 0.954 107.4 51.2 -61.2 -48.2 23.4 11.9 42.8 77 31 B Q H X S+ 0 0 120 -4,-1.9 4,-1.1 1,-0.2 -1,-0.2 0.847 110.6 50.7 -56.7 -35.3 26.7 13.4 41.5 78 32 B L H X S+ 0 0 21 -4,-1.5 4,-2.4 2,-0.2 3,-0.3 0.950 112.5 44.4 -67.6 -48.8 27.0 10.4 39.3 79 33 B T H X S+ 0 0 52 -4,-2.7 4,-3.0 1,-0.2 5,-0.3 0.927 110.4 54.3 -61.9 -45.1 23.5 10.7 37.9 80 34 B V H X S+ 0 0 65 -4,-3.4 4,-1.5 1,-0.2 -1,-0.2 0.817 111.6 47.9 -57.5 -29.9 23.9 14.5 37.4 81 35 B W H X S+ 0 0 91 -4,-1.1 4,-1.7 -5,-0.3 -1,-0.2 0.884 110.6 49.6 -76.2 -42.9 27.0 13.6 35.4 82 36 B G H X S+ 0 0 4 -4,-2.4 4,-1.6 2,-0.2 -2,-0.2 0.925 111.6 48.7 -62.6 -46.1 25.2 10.9 33.4 83 37 B I H X S+ 0 0 109 -4,-3.0 4,-2.8 1,-0.2 5,-0.3 0.919 109.4 51.4 -61.5 -46.2 22.3 13.3 32.5 84 38 B K H X S+ 0 0 126 -4,-1.5 4,-1.6 -5,-0.3 -1,-0.2 0.859 107.1 55.5 -60.9 -32.6 24.7 16.1 31.5 85 39 B Q H X S+ 0 0 55 -4,-1.7 4,-1.5 2,-0.2 -1,-0.2 0.882 113.5 40.1 -65.9 -39.0 26.4 13.6 29.2 86 40 B L H X S+ 0 0 87 -4,-1.6 4,-3.8 -3,-0.2 -2,-0.2 0.891 114.0 49.9 -77.5 -44.1 23.2 12.7 27.4 87 41 B Q H X S+ 0 0 109 -4,-2.8 4,-1.6 1,-0.2 -2,-0.2 0.842 110.6 54.2 -64.1 -31.7 21.7 16.2 27.2 88 42 B A H < S+ 0 0 60 -4,-1.6 -1,-0.2 -5,-0.3 -2,-0.2 0.942 118.1 32.9 -66.2 -50.7 25.1 17.3 25.8 89 43 B R H < S+ 0 0 142 -4,-1.5 -2,-0.2 2,-0.2 -3,-0.2 0.987 119.4 55.2 -67.9 -59.6 25.0 14.7 23.0 90 44 B I H < 0 0 110 -4,-3.8 -3,-0.2 1,-0.2 -2,-0.2 0.886 360.0 360.0 -35.3 -80.2 21.2 14.8 22.7 91 45 B L < 0 0 196 -4,-1.6 -1,-0.2 -5,-0.2 -2,-0.2 -0.449 360.0 360.0-133.9 360.0 20.7 18.4 22.0 92 !* 0 0 0 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 360.0 0.0 0.0 0.0 93 628 C W > 0 0 124 0, 0.0 4,-1.8 0, 0.0 5,-0.0 0.000 360.0 360.0 360.0 -9.1 19.9 46.3 18.2 94 629 C E H > + 0 0 108 2,-0.2 4,-3.8 3,-0.2 5,-0.3 0.883 360.0 47.7 -82.1 -42.0 17.7 49.1 16.8 95 630 C E H > S+ 0 0 140 2,-0.2 4,-2.9 1,-0.2 5,-0.2 0.938 113.0 50.8 -59.5 -45.2 20.1 49.4 13.8 96 631 C W H > S+ 0 0 62 1,-0.2 4,-1.1 2,-0.2 -2,-0.2 0.931 116.3 40.1 -55.8 -48.6 19.9 45.6 13.6 97 632 C D H X S+ 0 0 74 -4,-1.8 4,-1.4 2,-0.2 -2,-0.2 0.806 114.0 51.6 -73.2 -33.0 16.1 45.8 13.7 98 633 C R H X S+ 0 0 145 -4,-3.8 4,-1.5 1,-0.2 -2,-0.2 0.938 112.0 48.9 -66.8 -45.2 15.8 48.8 11.4 99 634 C E H X S+ 0 0 58 -4,-2.9 4,-2.5 -5,-0.3 -2,-0.2 0.749 103.2 63.4 -63.1 -29.4 18.1 47.0 8.9 100 635 C I H X S+ 0 0 37 -4,-1.1 4,-1.1 2,-0.2 -1,-0.2 0.977 110.6 33.7 -62.4 -59.0 16.0 43.8 9.2 101 636 C E H < S+ 0 0 120 -4,-1.4 -1,-0.2 1,-0.2 -2,-0.2 0.784 116.3 63.2 -68.4 -21.8 12.8 45.3 7.8 102 637 C N H < S+ 0 0 103 -4,-1.5 -2,-0.2 1,-0.2 -1,-0.2 0.943 110.6 32.6 -66.4 -52.9 15.0 47.4 5.5 103 638 C Y H < 0 0 73 -4,-2.5 -1,-0.2 -5,-0.1 -2,-0.2 0.565 360.0 360.0 -83.0 -10.0 16.6 44.6 3.5 104 639 C T < 0 0 131 -4,-1.1 -78,-0.0 -5,-0.2 -3,-0.0 -0.414 360.0 360.0 -91.6 360.0 13.5 42.4 3.7 105 !* 0 0 0 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 360.0 0.0 0.0 0.0 106 628 D W > 0 0 110 0, 0.0 4,-2.2 0, 0.0 5,-0.2 0.000 360.0 360.0 360.0 -34.5 30.9 5.8 31.0 107 629 D E H > + 0 0 131 1,-0.2 4,-0.7 2,-0.2 5,-0.0 0.703 360.0 54.7 -73.2 -16.2 32.0 2.3 31.9 108 630 D E H > S+ 0 0 119 2,-0.2 4,-2.4 3,-0.1 -1,-0.2 0.846 106.8 52.2 -77.4 -35.0 33.6 3.8 35.0 109 631 D W H > S+ 0 0 70 1,-0.2 4,-2.9 2,-0.2 5,-0.3 0.905 105.0 53.9 -62.9 -46.5 30.1 5.3 35.7 110 632 D D H X S+ 0 0 64 -4,-2.2 4,-1.1 1,-0.2 -1,-0.2 0.797 115.0 41.4 -60.3 -29.7 28.5 1.9 35.4 111 633 D R H X S+ 0 0 113 -4,-0.7 4,-1.9 2,-0.2 -2,-0.2 0.790 112.1 54.2 -88.1 -32.4 31.0 0.6 38.0 112 634 D E H X S+ 0 0 53 -4,-2.4 4,-1.6 2,-0.2 5,-0.2 0.939 110.3 46.6 -64.5 -48.9 30.8 3.7 40.2 113 635 D I H X S+ 0 0 33 -4,-2.9 4,-2.3 1,-0.2 3,-0.5 0.953 111.2 52.0 -57.1 -52.8 27.0 3.4 40.5 114 636 D E H < S+ 0 0 79 -4,-1.1 -1,-0.2 -5,-0.3 -2,-0.2 0.865 109.8 49.0 -52.5 -43.2 27.1 -0.3 41.2 115 637 D N H < S+ 0 0 111 -4,-1.9 -1,-0.2 1,-0.2 -2,-0.2 0.796 119.1 37.8 -68.2 -32.5 29.7 0.3 44.1 116 638 D Y H < 0 0 68 -4,-1.6 -2,-0.2 -3,-0.5 -1,-0.2 0.592 360.0 360.0 -94.6 -14.2 27.5 3.0 45.6 117 639 D T < 0 0 134 -4,-2.3 -3,-0.2 -5,-0.2 -2,-0.2 0.777 360.0 360.0-105.6 360.0 24.3 1.2 44.8