==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=16-NOV-2012 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER TRANSCRIPTION/DNA 06-SEP-12 4GZN . COMPND 2 MOLECULE: DNA (5'-D(*TP*AP*TP*TP*GP*CP*(5CM)P*GP*CP*AP*G)-3 . SOURCE 2 SYNTHETIC: YES; . AUTHOR Y.LIU,X.ZHANG,X.CHENG . 58 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 4793.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 31 53.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 6 10.3 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 2 3.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 1 1.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 6 10.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 17 29.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 1 1.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 136 C S 0 0 108 0, 0.0 2,-0.1 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 -2.6 -18.9 -24.1 -1.6 2 137 C E - 0 0 65 1,-0.1 3,-0.1 13,-0.1 0, 0.0 -0.433 360.0-173.6 -71.1 137.9 -18.2 -26.6 1.2 3 138 C R + 0 0 125 -2,-0.1 12,-0.2 1,-0.1 11,-0.1 -0.675 20.8 156.2-126.7 75.7 -18.4 -25.4 4.8 4 139 C P + 0 0 86 0, 0.0 2,-0.4 0, 0.0 11,-0.1 0.564 46.2 85.4 -88.2 -7.0 -17.1 -28.4 6.7 5 140 C F E +A 14 0A 80 9,-1.8 9,-2.5 -3,-0.1 2,-0.3 -0.775 60.4 174.1 -93.9 135.6 -15.9 -26.7 9.9 6 141 C F E -A 13 0A 112 -2,-0.4 2,-0.3 7,-0.2 7,-0.2 -0.994 34.0-108.4-149.0 154.7 -18.6 -26.1 12.5 7 142 C C > - 0 0 3 5,-2.1 4,-1.8 -2,-0.3 3,-0.0 -0.606 20.3-145.4 -79.1 132.7 -19.3 -24.9 16.0 8 143 C N T 4 S+ 0 0 134 -2,-0.3 -1,-0.1 1,-0.2 16,-0.0 0.485 95.5 43.1 -82.9 4.7 -20.2 -27.5 18.7 9 144 C F T 4 S+ 0 0 190 3,-0.1 -1,-0.2 0, 0.0 -2,-0.0 0.679 133.2 11.1-119.2 -21.8 -22.6 -25.4 20.5 10 145 C C T 4 S- 0 0 68 2,-0.1 -2,-0.2 -3,-0.0 0, 0.0 0.444 89.6-124.7-132.7 -2.4 -24.5 -23.6 17.8 11 146 C G < + 0 0 38 -4,-1.8 -3,-0.1 1,-0.2 0, 0.0 0.469 47.1 161.8 77.8 2.0 -23.6 -25.4 14.6 12 147 C K - 0 0 108 -6,-0.1 -5,-2.1 1,-0.1 2,-0.2 -0.332 29.8-139.3 -59.8 137.2 -22.5 -22.4 12.7 13 148 C T E -A 6 0A 57 -7,-0.2 2,-0.3 2,-0.0 -7,-0.2 -0.675 17.0-164.6-107.4 156.9 -20.4 -23.5 9.7 14 149 C Y E -A 5 0A 33 -9,-2.5 -9,-1.8 -2,-0.2 3,-0.1 -0.965 28.6-132.4-140.8 149.1 -17.2 -22.1 8.1 15 150 C R S S+ 0 0 142 -2,-0.3 2,-0.3 -12,-0.2 -1,-0.1 0.772 93.0 5.7 -67.7 -32.0 -15.2 -22.5 4.9 16 151 C D S >> S- 0 0 79 -13,-0.1 4,-1.1 -11,-0.1 3,-0.5 -0.918 84.2 -93.3-150.7 171.7 -12.0 -22.9 6.9 17 152 C A H 3> S+ 0 0 54 -2,-0.3 4,-2.5 1,-0.2 5,-0.2 0.730 111.9 67.2 -66.3 -23.5 -10.6 -23.3 10.4 18 153 C S H 3> S+ 0 0 57 2,-0.2 4,-2.2 1,-0.2 -1,-0.2 0.912 99.1 47.6 -66.9 -43.8 -9.9 -19.6 10.8 19 154 C G H <> S+ 0 0 19 -3,-0.5 4,-2.2 1,-0.2 -1,-0.2 0.890 114.5 48.2 -63.7 -38.8 -13.5 -18.5 10.9 20 155 C L H X S+ 0 0 15 -4,-1.1 4,-2.9 2,-0.2 5,-0.3 0.911 108.2 54.1 -66.8 -42.9 -14.3 -21.3 13.3 21 156 C S H X S+ 0 0 35 -4,-2.5 4,-2.2 1,-0.2 -2,-0.2 0.938 112.6 44.0 -55.7 -47.0 -11.4 -20.3 15.6 22 157 C R H X S+ 0 0 111 -4,-2.2 4,-2.0 2,-0.2 -1,-0.2 0.903 113.2 50.6 -67.0 -41.1 -12.6 -16.8 15.8 23 158 C H H X S+ 0 0 29 -4,-2.2 4,-2.2 2,-0.2 -2,-0.2 0.925 110.1 49.4 -64.7 -45.3 -16.3 -17.8 16.3 24 159 C R H X S+ 0 0 128 -4,-2.9 4,-1.7 1,-0.2 -1,-0.2 0.929 111.6 49.2 -58.2 -46.6 -15.4 -20.2 19.2 25 160 C R H X>S+ 0 0 108 -4,-2.2 5,-2.5 -5,-0.3 4,-0.9 0.848 106.7 56.5 -63.9 -33.0 -13.3 -17.5 20.8 26 161 C A H ><5S+ 0 0 73 -4,-2.0 3,-0.6 1,-0.2 -1,-0.2 0.916 106.1 49.7 -64.9 -42.4 -16.2 -15.0 20.5 27 162 C H H 3<5S+ 0 0 105 -4,-2.2 -1,-0.2 1,-0.2 -2,-0.2 0.887 113.9 47.3 -58.7 -38.8 -18.5 -17.4 22.4 28 163 C L H 3<5S- 0 0 143 -4,-1.7 -1,-0.2 -5,-0.2 -2,-0.2 0.630 107.9-125.9 -75.7 -15.3 -15.8 -17.7 25.0 29 164 C G T <<5 + 0 0 50 -4,-0.9 2,-1.0 -3,-0.6 -3,-0.2 0.775 49.3 164.9 69.3 26.7 -15.2 -13.9 25.2 30 165 C Y < + 0 0 118 -5,-2.5 -1,-0.2 -6,-0.1 -2,-0.1 -0.680 6.9 150.8 -84.3 102.0 -11.5 -14.5 24.6 31 166 C R + 0 0 117 -2,-1.0 12,-0.2 -3,-0.1 11,-0.1 -0.764 10.0 167.6-133.8 78.6 -10.3 -11.1 23.6 32 167 C P + 0 0 38 0, 0.0 2,-0.5 0, 0.0 11,-0.2 0.548 51.4 75.6 -83.5 -9.2 -6.6 -11.1 24.8 33 168 C R E -B 42 0B 120 9,-2.0 9,-3.1 11,-0.0 2,-0.3 -0.887 63.7-166.0-108.1 131.8 -5.4 -7.9 23.0 34 169 C S E -B 41 0B 55 -2,-0.5 7,-0.2 7,-0.2 6,-0.1 -0.842 28.1-107.8-120.8 152.6 -6.2 -4.5 24.4 35 170 C C > - 0 0 1 5,-2.8 4,-2.2 -2,-0.3 5,-0.0 -0.608 24.7-148.6 -67.6 125.3 -6.1 -0.9 23.3 36 171 C P T 4 S+ 0 0 115 0, 0.0 -1,-0.2 0, 0.0 12,-0.0 0.755 94.0 53.7 -71.5 -20.0 -3.3 0.8 25.2 37 172 C E T 4 S+ 0 0 136 3,-0.1 -2,-0.0 1,-0.1 15,-0.0 0.965 130.5 5.1 -74.9 -53.2 -5.2 4.1 25.2 38 173 C C T 4 S- 0 0 71 2,-0.1 -1,-0.1 0, 0.0 -4,-0.0 0.512 91.0-119.7-115.9 -10.0 -8.5 3.0 26.6 39 174 C G < + 0 0 44 -4,-2.2 2,-0.1 1,-0.3 0, 0.0 0.372 55.5 153.3 86.2 -5.0 -8.2 -0.6 27.6 40 175 C K - 0 0 121 -6,-0.1 -5,-2.8 1,-0.1 2,-0.3 -0.361 38.7-131.4 -63.0 135.9 -10.9 -1.9 25.4 41 176 C C E +B 34 0B 59 -7,-0.2 2,-0.3 -2,-0.1 -7,-0.2 -0.656 26.5 178.5 -96.6 146.9 -10.2 -5.6 24.5 42 177 C F E -B 33 0B 19 -9,-3.1 -9,-2.0 -2,-0.3 3,-0.0 -0.878 40.8-106.3-139.6 168.0 -10.3 -7.2 21.0 43 178 C R S S- 0 0 97 -2,-0.3 2,-0.3 -12,-0.2 -9,-0.1 0.776 94.9 -2.8 -70.0 -28.5 -9.7 -10.6 19.6 44 179 C D S > S- 0 0 33 -11,-0.1 4,-1.8 -13,-0.1 3,-0.2 -0.942 76.3 -95.4-158.4 169.9 -6.3 -9.8 18.0 45 180 C Q H > S+ 0 0 85 -2,-0.3 4,-2.9 1,-0.2 5,-0.2 0.842 117.6 60.8 -67.3 -34.5 -3.8 -7.0 17.4 46 181 C S H > S+ 0 0 86 1,-0.2 4,-2.1 2,-0.2 -1,-0.2 0.895 106.1 47.3 -57.2 -42.8 -5.2 -6.2 14.0 47 182 C E H > S+ 0 0 40 -3,-0.2 4,-1.8 2,-0.2 -1,-0.2 0.889 110.9 51.0 -69.0 -39.9 -8.5 -5.4 15.5 48 183 C V H X S+ 0 0 0 -4,-1.8 4,-1.4 1,-0.2 3,-0.2 0.958 110.0 51.1 -56.3 -48.9 -6.9 -3.2 18.2 49 184 C N H < S+ 0 0 83 -4,-2.9 4,-0.4 1,-0.3 3,-0.4 0.885 109.0 49.5 -59.5 -40.8 -5.0 -1.4 15.4 50 185 C R H >< S+ 0 0 155 -4,-2.1 3,-0.6 1,-0.2 -1,-0.3 0.840 110.1 52.8 -65.5 -36.0 -8.2 -0.7 13.5 51 186 C H H >< S+ 0 0 25 -4,-1.8 3,-2.4 -3,-0.2 4,-0.3 0.757 86.9 83.7 -66.0 -29.7 -9.9 0.6 16.7 52 187 C L G >< S+ 0 0 66 -4,-1.4 3,-2.6 -3,-0.4 -1,-0.2 0.781 73.4 71.9 -53.8 -33.9 -7.1 3.1 17.5 53 188 C K G X S+ 0 0 123 -3,-0.6 3,-1.8 -4,-0.4 -1,-0.3 0.684 77.7 79.6 -61.3 -16.9 -8.4 5.8 15.2 54 189 C V G < S+ 0 0 98 -3,-2.4 -1,-0.3 1,-0.3 -2,-0.2 0.825 90.4 56.6 -48.4 -34.5 -11.3 6.3 17.7 55 190 C H G < S+ 0 0 73 -3,-2.6 -1,-0.3 -4,-0.3 -2,-0.2 0.427 83.2 103.8 -90.0 1.7 -8.7 8.3 19.6 56 191 C Q S < S- 0 0 143 -3,-1.8 2,-0.4 -4,-0.1 -3,-0.0 -0.493 84.5-104.1 -71.7 152.2 -7.8 10.8 16.9 57 192 C N 0 0 164 -2,-0.1 -2,-0.1 1,-0.1 -1,-0.1 -0.694 360.0 360.0 -78.5 127.0 -9.3 14.3 17.1 58 193 C K 0 0 153 -2,-0.4 -1,-0.1 -4,-0.1 -4,-0.0 -0.385 360.0 360.0 -75.6 360.0 -12.1 14.4 14.7