==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=14-JUN-2013 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER VIRAL PROTEIN 08-APR-09 3H01 . COMPND 2 MOLECULE: ENVELOPE GLYCOPROTEIN GP160; . SOURCE 2 ORGANISM_SCIENTIFIC: HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 LW . AUTHOR J.LIU . 100 2 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 8791.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 95 95.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 5 5.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 89 89.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 1 1.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A E >> 0 0 171 0, 0.0 3,-2.4 0, 0.0 4,-0.6 0.000 360.0 360.0 360.0-172.1 0.9 -24.5 -23.1 2 2 A W H 3> + 0 0 146 1,-0.3 4,-2.4 2,-0.2 5,-0.2 0.667 360.0 76.1 -58.0 -17.6 2.1 -20.9 -22.7 3 3 A D H 3> S+ 0 0 67 2,-0.2 4,-2.6 1,-0.2 -1,-0.3 0.861 90.2 58.5 -59.7 -32.9 -0.8 -20.1 -20.5 4 4 A R H <> S+ 0 0 159 -3,-2.4 4,-2.7 2,-0.2 -1,-0.2 0.962 108.2 44.6 -55.5 -53.3 1.0 -22.0 -17.8 5 5 A E H X S+ 0 0 64 -4,-0.6 4,-2.7 1,-0.2 5,-0.3 0.914 112.6 51.1 -59.5 -46.4 4.0 -19.7 -18.0 6 6 A I H X S+ 0 0 14 -4,-2.4 4,-2.2 1,-0.2 -1,-0.2 0.933 113.3 45.1 -58.8 -43.1 1.8 -16.6 -18.2 7 7 A N H X S+ 0 0 99 -4,-2.6 4,-2.3 1,-0.2 -1,-0.2 0.909 114.2 49.1 -67.0 -43.1 -0.1 -17.7 -15.0 8 8 A N H X S+ 0 0 99 -4,-2.7 4,-2.4 2,-0.2 -2,-0.2 0.908 112.4 46.9 -61.1 -45.5 3.1 -18.7 -13.2 9 9 A Y H X S+ 0 0 124 -4,-2.7 4,-2.5 2,-0.2 -2,-0.2 0.871 111.1 53.6 -67.4 -36.3 4.8 -15.3 -14.1 10 10 A T H X S+ 0 0 28 -4,-2.2 4,-2.2 -5,-0.3 -2,-0.2 0.922 111.1 45.5 -62.9 -46.1 1.7 -13.5 -13.0 11 11 A S H X S+ 0 0 70 -4,-2.3 4,-2.5 2,-0.2 -2,-0.2 0.895 111.2 52.6 -66.2 -39.5 1.8 -15.2 -9.6 12 12 A L H X S+ 0 0 94 -4,-2.4 4,-2.7 2,-0.2 -2,-0.2 0.923 107.5 51.1 -62.7 -44.0 5.5 -14.6 -9.2 13 13 A I H X S+ 0 0 2 -4,-2.5 4,-2.8 1,-0.2 5,-0.2 0.944 111.1 49.2 -58.9 -45.3 5.0 -10.9 -9.8 14 14 A H H X S+ 0 0 78 -4,-2.2 4,-2.5 1,-0.2 -2,-0.2 0.904 110.1 51.2 -58.1 -42.4 2.3 -10.9 -7.2 15 15 A S H X S+ 0 0 67 -4,-2.5 4,-2.5 2,-0.2 -2,-0.2 0.910 111.9 47.0 -60.6 -44.0 4.6 -12.8 -4.8 16 16 A L H X S+ 0 0 81 -4,-2.7 4,-2.7 2,-0.2 -2,-0.2 0.910 110.4 51.4 -65.2 -44.1 7.4 -10.2 -5.4 17 17 A I H X S+ 0 0 17 -4,-2.8 4,-2.6 1,-0.2 -2,-0.2 0.921 113.2 47.0 -57.1 -45.1 5.0 -7.2 -4.9 18 18 A E H X S+ 0 0 96 -4,-2.5 4,-3.0 2,-0.2 -2,-0.2 0.893 110.2 51.0 -65.4 -40.8 3.9 -8.9 -1.6 19 19 A E H X S+ 0 0 103 -4,-2.5 4,-2.1 2,-0.2 -2,-0.2 0.926 112.2 48.0 -61.5 -42.0 7.5 -9.5 -0.5 20 20 A S H X S+ 0 0 8 -4,-2.7 4,-2.4 2,-0.2 -2,-0.2 0.929 111.8 49.4 -64.5 -42.8 8.3 -5.8 -1.2 21 21 A Q H X S+ 0 0 77 -4,-2.6 4,-2.7 1,-0.2 -2,-0.2 0.923 110.4 50.8 -63.2 -44.3 5.2 -4.7 0.7 22 22 A N H X S+ 0 0 88 -4,-3.0 4,-2.1 1,-0.2 -1,-0.2 0.869 109.4 50.7 -59.7 -37.5 6.2 -6.9 3.6 23 23 A Q H X S+ 0 0 104 -4,-2.1 4,-2.3 2,-0.2 -2,-0.2 0.901 110.3 49.6 -66.6 -40.5 9.7 -5.4 3.6 24 24 A Q H X S+ 0 0 27 -4,-2.4 4,-2.5 1,-0.2 -2,-0.2 0.924 111.3 49.3 -62.7 -44.8 8.2 -1.9 3.6 25 25 A E H X S+ 0 0 86 -4,-2.7 4,-2.4 2,-0.2 -2,-0.2 0.870 110.0 50.4 -62.4 -40.2 5.9 -2.8 6.5 26 26 A K H X S+ 0 0 128 -4,-2.1 4,-2.7 2,-0.2 -1,-0.2 0.920 110.6 49.6 -65.4 -44.4 8.8 -4.2 8.6 27 27 A L H X S+ 0 0 36 -4,-2.3 4,-2.7 2,-0.2 -2,-0.2 0.917 111.2 49.6 -59.2 -44.1 10.8 -1.1 8.0 28 28 A E H X S+ 0 0 82 -4,-2.5 4,-2.4 1,-0.2 -2,-0.2 0.907 112.1 47.3 -61.8 -41.8 7.9 1.1 9.1 29 29 A Q H X S+ 0 0 128 -4,-2.4 4,-2.3 2,-0.2 -1,-0.2 0.895 111.9 51.3 -67.3 -38.6 7.4 -1.0 12.2 30 30 A E H X S+ 0 0 84 -4,-2.7 4,-2.6 2,-0.2 -2,-0.2 0.932 110.6 48.2 -62.4 -45.8 11.2 -0.8 12.9 31 31 A L H X S+ 0 0 42 -4,-2.7 4,-2.9 1,-0.2 -2,-0.2 0.911 111.0 51.0 -62.1 -42.2 11.2 3.0 12.6 32 32 A L H X S+ 0 0 123 -4,-2.4 4,-2.1 2,-0.2 -1,-0.2 0.914 112.2 46.2 -61.7 -42.7 8.1 3.3 14.9 33 33 A E H X S+ 0 0 126 -4,-2.3 4,-2.2 2,-0.2 -2,-0.2 0.908 114.3 47.6 -68.8 -40.7 9.8 1.1 17.6 34 34 A L H X S+ 0 0 113 -4,-2.6 4,-3.0 1,-0.2 -2,-0.2 0.900 110.7 52.3 -64.3 -41.0 13.1 3.0 17.3 35 35 A D H X S+ 0 0 109 -4,-2.9 4,-2.4 2,-0.2 -1,-0.2 0.894 108.3 52.0 -61.3 -40.2 11.2 6.4 17.4 36 36 A K H X S+ 0 0 103 -4,-2.1 4,-2.0 2,-0.2 -2,-0.2 0.946 114.6 40.4 -62.8 -50.5 9.5 5.2 20.6 37 37 A W H X S+ 0 0 118 -4,-2.2 4,-2.9 2,-0.2 5,-0.3 0.887 111.9 56.1 -72.5 -31.9 12.7 4.3 22.4 38 38 A A H X S+ 0 0 58 -4,-3.0 4,-2.8 1,-0.2 -1,-0.2 0.919 108.5 49.6 -58.7 -41.6 14.5 7.3 21.0 39 39 A S H X S+ 0 0 66 -4,-2.4 4,-2.2 1,-0.2 -2,-0.2 0.900 111.3 48.0 -66.8 -38.9 11.8 9.4 22.6 40 40 A L H X S+ 0 0 67 -4,-2.0 4,-2.4 2,-0.2 -2,-0.2 0.908 113.6 46.3 -70.8 -38.8 12.1 7.6 25.9 41 41 A W H X S+ 0 0 144 -4,-2.9 4,-2.5 2,-0.2 -2,-0.2 0.896 111.4 52.1 -70.0 -35.8 15.9 7.9 26.0 42 42 A N H X S+ 0 0 95 -4,-2.8 4,-2.8 -5,-0.3 5,-0.2 0.924 109.2 51.1 -60.4 -41.9 15.7 11.5 25.1 43 43 A W H X S+ 0 0 156 -4,-2.2 4,-2.7 1,-0.2 -2,-0.2 0.932 109.8 49.7 -60.6 -45.8 13.3 11.9 28.0 44 44 A F H X S+ 0 0 85 -4,-2.4 4,-2.6 2,-0.2 -1,-0.2 0.930 111.8 47.7 -58.2 -45.6 15.7 10.2 30.3 45 45 A N H X S+ 0 0 96 -4,-2.5 4,-2.3 1,-0.2 -2,-0.2 0.915 113.2 47.3 -65.2 -41.9 18.6 12.5 29.2 46 46 A I H X S+ 0 0 81 -4,-2.8 4,-2.5 2,-0.2 -1,-0.2 0.915 110.3 53.5 -62.8 -45.1 16.5 15.6 29.5 47 47 A T H X S+ 0 0 55 -4,-2.7 4,-1.0 -5,-0.2 -2,-0.2 0.947 109.5 48.1 -59.6 -43.5 15.3 14.5 33.0 48 48 A N H >< S+ 0 0 76 -4,-2.6 3,-0.7 1,-0.2 4,-0.5 0.916 111.2 50.9 -62.2 -39.2 18.9 14.0 34.1 49 49 A W H >< S+ 0 0 172 -4,-2.3 3,-1.2 1,-0.2 4,-0.3 0.893 105.1 56.4 -65.6 -37.1 19.9 17.4 32.8 50 50 A L H >< S+ 0 0 87 -4,-2.5 3,-1.4 1,-0.3 -1,-0.2 0.745 89.6 75.7 -68.6 -21.5 17.0 19.2 34.6 51 51 A W T << S+ 0 0 193 -4,-1.0 -1,-0.3 -3,-0.7 -2,-0.2 0.835 88.0 60.0 -57.4 -36.0 18.2 17.8 38.0 52 52 A Y T < S+ 0 0 171 -3,-1.2 2,-0.4 -4,-0.5 -1,-0.3 0.626 77.2 105.8 -74.5 -13.7 21.0 20.4 38.1 53 53 A I < 0 0 106 -3,-1.4 -3,-0.0 -4,-0.3 0, 0.0 -0.551 360.0 360.0 -68.3 123.1 18.7 23.4 37.9 54 54 A K 0 0 185 -2,-0.4 -1,-0.1 0, 0.0 -2,-0.0 0.059 360.0 360.0 -94.1 360.0 18.6 24.9 41.4 55 !* 0 0 0 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 360.0 0.0 0.0 0.0 56 9 B Y >> 0 0 92 0, 0.0 4,-4.0 0, 0.0 5,-0.6 0.000 360.0 360.0 360.0-164.5 19.9 9.0 9.0 57 10 B T H >5 + 0 0 70 1,-0.2 4,-2.0 2,-0.2 5,-0.1 0.839 360.0 35.2 -34.2 -63.0 16.8 11.4 7.7 58 11 B S H >5S+ 0 0 65 1,-0.2 4,-1.3 2,-0.2 -1,-0.2 0.805 120.5 50.4 -65.8 -34.8 17.9 11.4 3.9 59 12 B L H >5S+ 0 0 133 -3,-0.4 4,-0.8 2,-0.2 -2,-0.2 0.927 112.9 40.8 -76.3 -48.6 19.2 7.8 3.9 60 13 B I H >X5S+ 0 0 65 -4,-4.0 4,-1.5 1,-0.2 3,-0.7 0.866 110.0 62.6 -66.8 -35.9 16.2 6.0 5.5 61 14 B H H 3X