==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=29-NOV-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER DNA BINDING 16-JUL-02 1H1J . COMPND 2 MOLECULE: THO1 PROTEIN; . SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; . AUTHOR J.O.B.JACOBSEN,S.M.V.FREUND,M.BYCROFT . 44 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 3492.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 29 65.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 3 6.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 4 9.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 20 45.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 2 4.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 S G 0 0 141 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 17.4 31.7 13.4 29.9 2 2 S S + 0 0 103 4,-0.0 0, 0.0 0, 0.0 0, 0.0 0.372 360.0 168.4-151.5 -52.3 31.2 11.6 26.5 3 3 S A - 0 0 68 3,-0.1 4,-0.0 2,-0.1 0, 0.0 0.129 33.6-120.6 49.3-178.2 28.6 13.3 24.3 4 4 S D S > S+ 0 0 78 4,-0.0 3,-0.8 2,-0.0 4,-0.1 0.462 91.0 20.4-121.1 -95.7 28.5 12.2 20.6 5 5 S Y G > S+ 0 0 31 1,-0.2 3,-2.0 2,-0.1 30,-0.1 0.805 86.9 119.5 -50.4 -30.4 29.0 14.5 17.6 6 6 S S G 3 S- 0 0 43 1,-0.3 -1,-0.2 29,-0.1 30,-0.1 0.568 101.1 -21.3 -3.1 -64.4 30.8 16.9 20.1 7 7 S S G < S+ 0 0 96 -3,-0.8 -1,-0.3 25,-0.0 -2,-0.1 -0.084 83.7 160.0-153.2 48.2 34.0 16.5 18.0 8 8 S L < - 0 0 41 -3,-2.0 2,-0.1 -4,-0.1 24,-0.1 -0.178 54.8 -87.0 -63.5 170.7 34.0 13.3 15.8 9 9 S T >> - 0 0 86 1,-0.1 4,-2.4 4,-0.0 3,-1.0 -0.452 42.6-103.9 -75.3 153.3 36.4 13.4 12.9 10 10 S V H 3> S+ 0 0 71 1,-0.3 4,-2.2 2,-0.2 5,-0.2 0.849 125.1 60.7 -48.6 -28.0 34.9 14.9 9.7 11 11 S V H 3> S+ 0 0 91 2,-0.2 4,-1.6 1,-0.2 -1,-0.3 0.939 108.3 40.0 -67.0 -43.9 34.6 11.3 8.6 12 12 S Q H <> S+ 0 0 71 -3,-1.0 4,-3.1 2,-0.2 5,-0.4 0.951 113.9 52.7 -72.3 -44.7 32.3 10.3 11.5 13 13 S L H X S+ 0 0 0 -4,-2.4 4,-2.2 1,-0.3 5,-0.3 0.951 114.2 44.0 -56.0 -43.8 30.3 13.6 11.4 14 14 S K H X S+ 0 0 125 -4,-2.2 4,-2.0 -5,-0.4 -1,-0.3 0.852 112.8 54.2 -68.8 -31.3 29.8 12.9 7.7 15 15 S D H X S+ 0 0 112 -4,-1.6 4,-2.3 -5,-0.2 -2,-0.2 0.966 112.7 39.6 -69.7 -49.9 29.0 9.2 8.5 16 16 S L H X S+ 0 0 30 -4,-3.1 4,-1.4 2,-0.2 6,-0.2 0.952 119.0 47.1 -66.5 -44.2 26.3 9.9 11.0 17 17 S L H <>S+ 0 0 0 -4,-2.2 5,-2.4 -5,-0.4 -1,-0.2 0.919 110.6 53.3 -64.0 -38.0 24.8 12.8 9.0 18 18 S T H ><5S+ 0 0 88 -4,-2.0 3,-1.0 -5,-0.3 -1,-0.2 0.949 115.2 39.7 -61.5 -44.4 24.9 10.6 5.9 19 19 S K H 3<5S+ 0 0 171 -4,-2.3 -1,-0.2 1,-0.2 -2,-0.2 0.665 107.8 65.8 -78.2 -13.6 23.0 7.9 7.7 20 20 S R T 3<5S- 0 0 101 -4,-1.4 -1,-0.2 2,-0.3 -2,-0.2 0.332 113.4-115.1 -88.2 8.7 20.8 10.6 9.3 21 21 S N T < 5S+ 0 0 164 -3,-1.0 2,-0.3 -5,-0.1 -3,-0.2 0.768 96.8 91.9 64.3 18.0 19.3 11.5 5.9 22 22 S L < - 0 0 51 -5,-2.4 -2,-0.3 -6,-0.2 -1,-0.1 -0.900 65.3-155.7-147.1 112.0 21.1 14.8 6.7 23 23 S S - 0 0 80 -2,-0.3 2,-0.6 -5,-0.1 -9,-0.1 -0.268 22.7-110.9 -82.6 175.0 24.7 15.5 5.6 24 24 S V - 0 0 18 -14,-0.1 2,-0.6 -10,-0.1 7,-0.1 -0.897 29.6-171.8-110.9 112.0 27.1 18.0 7.1 25 25 S G + 0 0 48 -2,-0.6 2,-0.2 5,-0.2 9,-0.0 -0.878 49.9 42.0-105.5 116.5 27.9 21.0 5.0 26 26 S G S S- 0 0 46 -2,-0.6 5,-0.1 4,-0.0 -2,-0.0 -0.799 92.9 -45.2 140.8 175.9 30.8 23.3 6.4 27 27 S L S > S- 0 0 102 -2,-0.2 4,-3.0 3,-0.1 5,-0.2 -0.007 74.6 -80.4 -66.0 179.8 34.3 23.0 7.9 28 28 S K H > S+ 0 0 71 1,-0.2 4,-2.6 2,-0.2 5,-0.2 0.933 136.4 46.1 -51.7 -47.0 35.0 20.6 10.8 29 29 S N H > S+ 0 0 107 2,-0.2 4,-3.4 1,-0.2 5,-0.3 0.940 110.2 53.7 -64.3 -40.3 33.4 23.0 13.3 30 30 S E H > S+ 0 0 72 2,-0.2 4,-3.0 1,-0.2 -2,-0.2 0.933 108.3 50.8 -58.9 -39.8 30.5 23.5 11.0 31 31 S L H X S+ 0 0 7 -4,-3.0 4,-2.4 2,-0.2 5,-0.3 0.962 111.2 47.7 -60.8 -47.8 30.1 19.7 11.0 32 32 S V H X S+ 0 0 31 -4,-2.6 4,-2.3 -5,-0.2 5,-0.4 0.935 114.0 47.1 -59.2 -44.7 30.2 19.7 14.8 33 33 S Q H X>S+ 0 0 100 -4,-3.4 4,-2.6 1,-0.2 5,-0.5 0.885 109.5 54.4 -66.9 -36.5 27.6 22.5 14.8 34 34 S R H X5S+ 0 0 88 -4,-3.0 4,-2.0 -5,-0.3 5,-0.3 0.937 112.3 42.4 -65.4 -43.9 25.4 20.7 12.3 35 35 S L H X5S+ 0 0 1 -4,-2.4 4,-2.4 -5,-0.2 5,-0.2 0.961 123.5 36.4 -68.8 -48.5 25.3 17.5 14.4 36 36 S I H X5S+ 0 0 56 -4,-2.3 4,-3.7 -5,-0.3 5,-0.3 0.945 120.8 46.5 -71.0 -45.2 24.8 19.2 17.7 37 37 S K H X5S+ 0 0 135 -4,-2.6 4,-1.8 -5,-0.4 5,-0.3 0.946 119.9 40.7 -62.4 -43.9 22.6 22.0 16.4 38 38 S D H X