==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=31-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER IMMUNE SYSTEM/DNA 22-MAY-06 2H3A . COMPND 2 MOLECULE: CCDA; . SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; . AUTHOR T.MADL,L.VAN MELDEREN,M.RESPONDEK,M.OBERER,W.KELLER, . 144 2 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 13408.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 63 43.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 7 4.9 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 15 10.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 3 2.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 34 23.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 4 2.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 2 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A M 0 0 182 0, 0.0 2,-0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 123.3 -14.6 -15.2 -20.3 2 2 A K - 0 0 99 1,-0.0 2,-0.4 79,-0.0 81,-0.2 -0.131 360.0-118.3 -78.5 179.9 -13.6 -12.7 -17.6 3 3 A Q - 0 0 61 79,-0.5 79,-1.0 77,-0.0 2,-0.7 -0.972 14.2-139.5-130.3 120.7 -10.3 -12.6 -15.7 4 4 A R E -A 81 0A 167 -2,-0.4 2,-0.5 77,-0.3 77,-0.2 -0.668 20.7-178.3 -81.9 117.0 -10.0 -13.0 -11.9 5 5 A I E -A 80 0A 3 75,-0.7 75,-2.9 -2,-0.7 2,-0.4 -0.955 7.1-178.5-113.8 122.2 -7.5 -10.7 -10.4 6 6 A T E -A 79 0A 53 -2,-0.5 2,-0.8 73,-0.3 73,-0.3 -0.971 23.0-159.2-131.6 129.9 -7.0 -11.1 -6.7 7 7 A V E -A 78 0A 1 71,-2.1 2,-3.7 -2,-0.4 71,-1.9 -0.866 20.4-144.9-100.2 103.5 -4.8 -9.2 -4.2 8 8 A T E +A 77 0A 85 -2,-0.8 69,-0.3 69,-0.3 -1,-0.1 -0.325 63.2 114.6 -69.8 67.2 -4.4 -11.5 -1.2 9 9 A V E +A 76 0A 15 -2,-3.7 67,-4.1 67,-1.0 2,-0.2 0.278 32.8 165.1-106.1-132.3 -4.4 -8.6 1.1 10 10 A D S >S+ 0 0 21 65,-0.2 5,-2.3 67,-0.0 6,-0.3 -0.726 79.4 36.7 148.3 -87.2 -7.0 -7.6 3.8 11 11 A S T 5S+ 0 0 101 63,-0.4 2,-2.5 -2,-0.2 64,-0.1 0.522 86.7 99.3 -74.6 -5.7 -5.6 -4.9 6.1 12 12 A D T 5S- 0 0 90 1,-0.2 94,-0.2 3,-0.0 2,-0.2 -0.247 117.8 -85.0 -79.7 56.8 -3.7 -3.1 3.4 13 13 A S T >5S+ 0 0 31 -2,-2.5 4,-1.3 92,-0.1 -1,-0.2 0.207 112.4 108.1 65.3 -18.5 -6.5 -0.6 3.2 14 14 A Y H >>5S+ 0 0 4 1,-0.2 4,-1.4 -2,-0.2 3,-0.8 0.939 75.2 51.4 -50.6 -56.0 -8.3 -3.0 0.8 15 15 A Q H 3> S+ 0 0 78 -6,-0.3 4,-0.7 2,-0.2 -1,-0.2 0.863 102.1 53.0 -54.4 -40.6 -11.7 -0.2 4.1 17 17 A L H XX>S+ 0 0 0 -4,-1.3 4,-1.4 -3,-0.8 3,-1.3 0.984 120.0 31.2 -58.9 -60.3 -12.8 0.4 0.5 18 18 A K H 3<5S+ 0 0 48 -4,-1.4 -2,-0.2 1,-0.3 -1,-0.2 0.768 107.4 74.0 -69.1 -25.8 -15.3 -2.5 0.4 19 19 A A H 3<5S+ 0 0 68 -4,-3.1 -1,-0.3 -5,-0.3 -2,-0.2 0.743 102.7 42.9 -59.2 -22.0 -15.9 -1.9 4.1 20 20 A Y H <<5S- 0 0 88 -3,-1.3 -2,-0.2 -4,-0.7 -1,-0.2 0.921 140.1 -70.6 -87.8 -54.1 -17.8 1.1 2.9 21 21 A D T <5S+ 0 0 128 -4,-1.4 2,-0.2 1,-0.1 -3,-0.2 0.279 102.7 90.0 163.9 35.2 -19.7 -0.5 -0.0 22 22 A V < - 0 0 46 -5,-0.5 -3,-0.2 -6,-0.1 -2,-0.2 -0.720 50.2-160.4-154.4 99.1 -17.3 -1.3 -2.9 23 23 A N - 0 0 116 -2,-0.2 -5,-0.1 -5,-0.2 56,-0.1 0.315 51.4-118.8 -60.7 13.4 -15.4 -4.6 -3.3 24 24 A I S > S+ 0 0 0 -7,-0.1 4,-3.2 1,-0.1 5,-0.3 0.278 76.0 131.9 65.1 -5.8 -13.2 -2.4 -5.5 25 25 A S H > S+ 0 0 66 1,-0.2 4,-1.1 2,-0.2 5,-0.3 0.901 81.3 31.5 -38.5 -62.3 -13.9 -4.5 -8.6 26 26 A G H > S+ 0 0 28 1,-0.1 4,-1.4 2,-0.1 -1,-0.2 0.880 123.2 50.2 -67.1 -38.7 -14.7 -1.4 -10.8 27 27 A L H > S+ 0 0 26 3,-0.2 4,-4.4 2,-0.2 5,-0.3 0.979 106.4 52.2 -63.5 -61.4 -12.2 0.8 -8.9 28 28 A V H X S+ 0 0 1 -4,-3.2 4,-3.2 1,-0.2 -2,-0.1 0.919 117.3 34.7 -40.1 -73.4 -9.2 -1.4 -9.0 29 29 A S H X S+ 0 0 0 -4,-1.1 4,-1.9 -5,-0.3 -1,-0.2 0.827 120.6 51.3 -57.7 -32.6 -9.0 -2.2 -12.8 30 30 A T H X S+ 0 0 74 -4,-1.4 4,-1.2 -5,-0.3 3,-0.3 0.979 111.8 46.1 -66.5 -54.1 -10.3 1.4 -13.5 31 31 A T H >X S+ 0 0 26 -4,-4.4 4,-1.9 1,-0.2 3,-1.1 0.918 107.5 59.3 -51.8 -47.8 -7.7 2.9 -11.4 32 32 A M H 3X S+ 0 0 0 -4,-3.2 4,-3.8 -5,-0.3 5,-0.4 0.905 96.3 59.9 -49.1 -49.0 -5.2 0.6 -13.0 33 33 A Q H 3X S+ 0 0 71 -4,-1.9 4,-1.7 -3,-0.3 -1,-0.3 0.867 107.1 49.3 -49.1 -36.3 -6.0 2.1 -16.5 34 34 A N H S+ 0 0 27 -53,-0.0 4,-0.6 -54,-0.0 -50,-0.1 0.165 84.6 124.9 169.0 46.8 -8.3 -2.1 -17.2 87 114 B Y H > + 0 0 9 2,-0.1 4,-1.6 1,-0.1 5,-0.4 0.900 63.6 63.8 -83.9 -52.6 -6.5 -4.7 -15.0 88 115 B Q H > S+ 0 0 67 1,-0.2 4,-2.3 2,-0.2 -1,-0.1 0.804 100.4 56.1 -48.7 -35.3 -4.4 -6.6 -17.4 89 116 B L H > S+ 0 0 87 2,-0.2 4,-1.9 1,-0.2 -1,-0.2 0.972 103.0 51.8 -62.5 -57.0 -2.3 -3.5 -18.3 90 117 B L H X>S+ 0 0 0 -4,-0.6 4,-1.9 1,-0.3 5,-1.7 0.902 121.7 33.5 -46.4 -48.8 -1.2 -2.6 -14.7 91 118 B K H <5S+ 0 0 22 -4,-1.6 -1,-0.3 3,-0.3 5,-0.2 0.801 107.6 69.2 -79.3 -27.9 0.0 -6.2 -14.2 92 119 B A H <5S+ 0 0 60 -4,-2.3 38,-0.2 -5,-0.4 -2,-0.2 0.813 108.4 39.5 -58.5 -28.1 1.1 -6.4 -17.9 93 120 B Y H <5S- 0 0 49 -4,-1.9 37,-0.4 -3,-0.3 -2,-0.2 0.914 137.9 -78.9 -88.4 -45.8 3.7 -3.9 -16.9 94 121 B D T <5S+ 0 0 50 -4,-1.9 -3,-0.3 -5,-0.2 2,-0.3 0.437 97.2 95.4 157.0 22.8 4.5 -5.4 -13.4 95 122 B V < - 0 0 20 -5,-1.7 2,-4.2 -6,-0.2 -3,-0.1 -0.622 43.3-167.9-138.9 82.6 2.0 -4.6 -10.7 96 123 B N - 0 0 49 -2,-0.3 2,-1.8 -5,-0.2 -5,-0.1 -0.211 59.9 -99.0 -64.5 56.7 -0.8 -7.2 -10.0 97 124 B I S >>S+ 0 0 2 -2,-4.2 4,-2.6 1,-0.2 5,-0.6 0.230 92.9 123.8 44.7 -11.6 -2.5 -4.5 -7.8 98 125 B S H >5S+ 0 0 65 -2,-1.8 4,-1.0 1,-0.3 -1,-0.2 0.908 93.4 18.9 -38.2 -60.6 -1.1 -6.0 -4.6 99 126 B G H >5S+ 0 0 27 3,-0.1 4,-1.3 2,-0.1 -1,-0.3 0.778 128.5 55.9 -81.1 -27.8 0.5 -2.6 -3.7 100 127 B L H >5S+ 0 0 16 2,-0.2 4,-3.9 3,-0.2 5,-0.4 0.989 109.7 41.4 -66.9 -62.3 -1.7 -0.7 -6.1 101 128 B V H X5S+ 0 0 0 -4,-2.6 4,-4.3 1,-0.2 5,-0.2 0.962 117.9 46.9 -47.1 -66.6 -5.1 -1.7 -4.8 102 129 B S H XS+ 0 0 71 -4,-1.9 4,-3.0 2,-0.2 5,-0.7 0.976 120.7 41.1 -64.3 -54.6 -6.5 7.1 -0.6 108 135 B E H X5S+ 0 0 42 -4,-4.3 4,-0.5 1,-0.2 -2,-0.2 0.786 116.0 54.7 -62.8 -27.1 -10.0 5.9 -1.7 109 136 B A H <5S+ 0 0 4 -4,-3.2 -2,-0.2 -5,-0.4 -1,-0.2 0.919 115.3 35.6 -72.3 -46.5 -10.6 4.8 1.9 110 137 B R H <5S+ 0 0 220 -4,-2.9 -2,-0.2 -5,-0.2 -3,-0.2 0.959 136.0 21.8 -71.2 -56.6 -9.8 8.2 3.4 111 138 B R H <5S- 0 0 134 -4,-3.0 -3,-0.2 -5,-0.2 3,-0.2 0.816 80.1-171.0 -83.7 -34.3 -11.2 10.4 0.7 112 139 B L << + 0 0 46 -5,-0.7 -4,-0.1 -4,-0.5 -3,-0.1 0.889 69.7 43.5 37.2 70.7 -13.7 8.0 -0.9 113 140 B R S S- 0 0 182 0, 0.0 2,-0.2 0, 0.0 -1,-0.2 -0.248 111.0 -40.8 171.3 -71.9 -14.6 10.1 -4.0 114 141 B A - 0 0 59 -3,-0.2 2,-0.2 -7,-0.1 0, 0.0 -0.877 44.0-169.3 179.5 148.1 -11.9 11.9 -5.9 115 142 B E - 0 0 75 -2,-0.2 2,-0.3 0, 0.0 -7,-0.0 -0.811 8.5-147.6-137.9 177.3 -8.7 13.9 -5.4 116 143 B R + 0 0 189 -2,-0.2 2,-0.1 0, 0.0 -2,-0.0 -0.978 16.3 168.1-153.9 137.7 -6.2 16.1 -7.4 117 144 B W - 0 0 188 -2,-0.3 2,-0.2 1,-0.1 3,-0.1 -0.309 27.5-106.8-125.5-151.4 -2.4 16.8 -7.1 118 145 B K - 0 0 168 1,-0.3 -1,-0.1 -2,-0.1 0, 0.0 -0.538 62.3 -22.7-130.5-163.8 0.3 18.5 -9.3 119 146 B V - 0 0 105 -2,-0.2 -1,-0.3 1,-0.1 0, 0.0 -0.087 60.3-119.7 -47.2 142.6 3.3 17.5 -11.5 120 147 B E - 0 0 116 1,-0.1 -1,-0.1 2,-0.1 3,-0.1 0.869 30.8-166.2 -53.4 -41.1 4.8 14.1 -10.7 121 148 B N + 0 0 133 1,-0.2 2,-0.3 0, 0.0 -1,-0.1 0.804 52.0 105.5 55.1 30.7 8.1 15.7 -9.9 122 149 B Q S S- 0 0 111 2,-0.0 2,-0.3 -81,-0.0 -1,-0.2 -1.000 71.0-120.6-143.3 141.4 9.7 12.2 -10.0 123 150 B E - 0 0 188 -2,-0.3 2,-1.0 -3,-0.1 -83,-0.0 -0.596 18.5-139.7 -82.5 139.2 11.9 10.4 -12.6 124 151 B G + 0 0 47 -2,-0.3 2,-0.4 1,-0.1 -83,-0.1 -0.711 41.1 148.2-102.1 84.5 10.6 7.1 -14.2 125 152 B M + 0 0 170 -2,-1.0 2,-0.4 2,-0.0 -84,-0.1 -0.563 29.0 122.2-115.1 67.0 13.6 4.7 -14.4 126 153 B V - 0 0 78 -2,-0.4 2,-0.1 -86,-0.3 -2,-0.0 -0.970 43.0-150.1-129.9 143.9 11.9 1.3 -14.0 127 154 B E - 0 0 162 -2,-0.4 -2,-0.0 1,-0.2 2,-0.0 -0.314 6.1-140.7-100.6-175.1 12.0 -1.8 -16.2 128 155 B V + 0 0 86 -2,-0.1 -1,-0.2 2,-0.1 -35,-0.1 0.257 43.3 135.8-114.7-122.4 9.5 -4.7 -16.9 129 156 B A - 0 0 90 1,-0.2 -35,-0.1 -36,-0.0 -36,-0.1 0.833 45.9-159.8 71.7 34.7 10.1 -8.4 -17.4 130 157 B R + 0 0 81 -37,-0.4 -1,-0.2 -38,-0.2 2,-0.1 -0.191 22.0 165.1 -49.3 126.7 7.2 -9.4 -15.1 131 158 B F + 0 0 176 -37,-0.1 3,-0.1 3,-0.0 -1,-0.1 -0.563 44.0 74.9-151.3 80.9 7.6 -12.9 -13.8 132 159 B I S S+ 0 0 139 1,-0.4 2,-0.4 -2,-0.1 -2,-0.0 0.348 74.1 70.8-148.9 -56.9 5.5 -14.0 -10.9 133 160 B E + 0 0 50 -42,-0.1 -1,-0.4 2,-0.0 2,-0.2 -0.623 54.5 148.9 -78.3 125.9 1.9 -14.5 -11.8 134 161 B M + 0 0 122 -2,-0.4 2,-0.3 -3,-0.1 -3,-0.0 -0.729 22.4 88.7-163.2 107.7 1.3 -17.6 -13.9 135 162 B N + 0 0 159 -2,-0.2 2,-0.1 2,-0.0 -2,-0.0 -0.965 22.4 139.3-176.5-175.9 -1.8 -19.9 -14.0 136 163 B G + 0 0 63 -2,-0.3 2,-0.3 0, 0.0 0, 0.0 -0.133 12.7 165.0 127.3 136.9 -5.2 -20.4 -15.6 137 164 B S - 0 0 117 -2,-0.1 2,-0.2 2,-0.0 -2,-0.0 -0.973 9.6-174.6-166.6 171.9 -7.4 -23.3 -16.9 138 165 B F - 0 0 169 -2,-0.3 2,-0.4 2,-0.0 0, 0.0 -0.751 3.7-175.8-179.8 129.9 -10.9 -24.4 -18.0 139 166 B A - 0 0 91 -2,-0.2 2,-0.5 0, 0.0 -2,-0.0 -0.896 17.6-147.5-139.0 106.9 -12.6 -27.7 -19.0 140 167 B D + 0 0 140 -2,-0.4 -2,-0.0 1,-0.1 3,-0.0 -0.608 37.8 144.1 -76.8 121.8 -16.2 -27.7 -20.2 141 168 B E S S- 0 0 164 -2,-0.5 2,-0.2 0, 0.0 -1,-0.1 0.019 72.9 -14.2-145.7 28.3 -18.0 -30.9 -19.2 142 169 B N - 0 0 128 1,-0.1 -2,-0.1 2,-0.1 0, 0.0 -0.657 60.4-122.3 176.3-116.4 -21.6 -29.8 -18.4 143 170 B K - 0 0 146 -2,-0.2 -1,-0.1 -3,-0.0 -3,-0.0 0.030 58.8 -89.1 168.3 -33.1 -23.2 -26.3 -17.8 144 171 B D 0 0 134 0, 0.0 -2,-0.1 0, 0.0 0, 0.0 0.798 360.0 360.0 98.0 88.9 -24.8 -26.7 -14.4 145 172 B W 0 0 282 0, 0.0 -3,-0.0 0, 0.0 0, 0.0 0.996 360.0 360.0 61.8 360.0 -28.3 -28.1 -14.3