==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=3-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER NUCLEAR PROTEIN 24-MAY-01 1H5P . COMPND 2 MOLECULE: NUCLEAR AUTOANTIGEN SP100-B; . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR M.J.BOTTOMLEY,Z.LIU,M.W.COLLARD,J.I.HUGGENVIK,T.J.GIBSON, . 95 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 6682.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 57 60.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 20 21.1 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 1 1.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 2 2.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 9 9.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 11 11.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 16 16.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 1 1.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 2 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 3 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 594 A M 0 0 207 0, 0.0 79,-0.0 0, 0.0 94,-0.0 0.000 360.0 360.0 360.0 -25.0 15.3 -8.0 3.5 2 595 A D - 0 0 63 2,-0.0 4,-0.1 4,-0.0 0, 0.0 0.109 360.0-132.7 59.7 179.3 11.8 -7.0 4.6 3 596 A E - 0 0 96 2,-0.2 3,-0.1 92,-0.1 0, 0.0 0.346 62.2 -38.7-129.4 -96.7 10.9 -6.5 8.3 4 597 A N S S+ 0 0 115 1,-0.1 2,-1.0 2,-0.0 65,-0.0 0.511 112.7 84.5-118.0 -14.7 7.8 -8.0 9.9 5 598 A I - 0 0 19 63,-0.1 2,-0.5 7,-0.0 -2,-0.2 -0.763 62.3-168.4 -96.6 94.3 5.2 -7.5 7.1 6 599 A N > - 0 0 80 -2,-1.0 3,-0.6 1,-0.1 5,-0.2 -0.710 14.2-167.4 -85.7 124.8 5.6 -10.6 4.8 7 600 A F G > S+ 0 0 71 -2,-0.5 3,-1.4 1,-0.2 -1,-0.1 0.441 72.7 91.0 -88.8 -1.4 3.8 -10.3 1.5 8 601 A K G 3 + 0 0 157 1,-0.3 -1,-0.2 2,-0.1 4,-0.1 0.475 69.4 77.2 -72.2 -0.8 4.3 -14.0 0.8 9 602 A Q G < S- 0 0 134 -3,-0.6 -1,-0.3 2,-0.1 -2,-0.1 0.362 103.0-126.7 -89.6 4.6 1.0 -14.5 2.5 10 603 A S S < S+ 0 0 80 -3,-1.4 15,-2.0 14,-0.1 2,-0.4 0.239 91.1 76.0 69.6 -16.5 -0.8 -13.3 -0.6 11 604 A E E -A 24 0A 91 13,-0.2 13,-0.2 -5,-0.2 -2,-0.1 -0.968 63.3-168.1-131.4 117.8 -2.6 -10.9 1.7 12 605 A L E -A 23 0A 0 11,-2.0 11,-2.4 -2,-0.4 2,-0.3 -0.905 24.5-123.4-107.9 126.4 -1.0 -7.7 3.1 13 606 A P E -A 22 0A 57 0, 0.0 56,-0.7 0, 0.0 2,-0.3 -0.501 32.9-172.7 -69.6 125.4 -2.7 -5.7 5.9 14 607 A V E -AB 21 68A 0 7,-2.4 7,-2.0 -2,-0.3 2,-0.3 -0.843 13.2-166.3-119.1 155.6 -3.3 -2.1 5.0 15 608 A T E -AB 20 67A 34 52,-2.6 52,-1.7 -2,-0.3 2,-0.8 -0.818 4.6-177.8-146.4 103.1 -4.6 0.9 7.0 16 609 A C E > S-A 19 0A 0 3,-1.9 3,-1.3 -2,-0.3 50,-0.2 -0.838 80.5 -32.5-104.3 100.2 -5.7 4.1 5.4 17 610 A G T 3 S- 0 0 34 -2,-0.8 -1,-0.2 48,-0.5 3,-0.1 0.960 125.8 -43.5 55.8 55.2 -6.7 6.6 8.1 18 611 A E T 3 S+ 0 0 184 1,-0.2 2,-1.6 -3,-0.2 -1,-0.3 0.371 115.9 122.1 71.7 -5.4 -7.9 3.9 10.5 19 612 A V E < -A 16 0A 41 -3,-1.3 -3,-1.9 31,-0.1 -1,-0.2 -0.589 49.5-167.3 -90.1 76.7 -9.6 2.4 7.5 20 613 A K E +A 15 0A 131 -2,-1.6 20,-0.3 -5,-0.3 2,-0.3 -0.027 12.4 166.6 -57.5 166.1 -7.9 -1.0 7.6 21 614 A G E -A 14 0A 9 -7,-2.0 -7,-2.4 18,-0.1 2,-0.6 -0.984 37.4 -99.0-171.9 171.2 -8.2 -3.4 4.6 22 615 A T E -AC 13 38A 42 16,-1.4 16,-2.3 -2,-0.3 2,-0.4 -0.924 31.0-152.3-110.7 116.9 -6.9 -6.5 2.9 23 616 A L E -AC 12 37A 5 -11,-2.4 -11,-2.0 -2,-0.6 2,-0.5 -0.742 7.9-144.4 -91.1 130.7 -4.4 -6.1 0.1 24 617 A Y E >> -A 11 0A 45 12,-1.2 4,-1.9 -2,-0.4 3,-1.1 -0.819 5.4-155.3 -97.1 127.4 -4.3 -8.7 -2.7 25 618 A K H 3> S+ 0 0 31 -15,-2.0 4,-1.1 -2,-0.5 -1,-0.1 0.828 90.6 72.8 -67.5 -32.8 -0.9 -9.6 -4.2 26 619 A E H 34 S+ 0 0 106 -16,-0.3 -1,-0.2 1,-0.2 10,-0.0 0.719 117.8 20.9 -54.8 -20.6 -2.5 -10.8 -7.4 27 620 A R H X> S+ 0 0 81 -3,-1.1 3,-2.7 9,-0.1 4,-0.8 0.558 103.0 85.8-120.0 -22.2 -3.1 -7.1 -8.1 28 621 A F H 3< S+ 0 0 9 -4,-1.9 3,-0.2 1,-0.3 -2,-0.2 0.737 73.3 79.6 -53.2 -24.0 -0.5 -5.5 -5.8 29 622 A K T 3< S+ 0 0 140 -4,-1.1 -1,-0.3 1,-0.3 55,-0.3 0.656 104.6 32.9 -59.9 -14.6 1.9 -6.0 -8.7 30 623 A Q T X4 S- 0 0 92 -3,-2.7 3,-0.9 1,-0.2 2,-0.3 0.528 89.4-173.7-115.9 -15.7 0.4 -2.8 -10.1 31 624 A G G >< S+ 0 0 10 -4,-0.8 3,-2.1 1,-0.3 -1,-0.2 -0.383 77.7 17.9 59.8-117.3 -0.4 -1.1 -6.8 32 625 A T G 3 S+ 0 0 61 -2,-0.3 -1,-0.3 1,-0.3 16,-0.1 0.370 122.6 67.0 -67.8 7.5 -2.4 2.1 -7.6 33 626 A S G < S+ 0 0 85 -3,-0.9 2,-0.3 1,-0.3 -1,-0.3 0.378 105.1 37.9-107.6 1.3 -3.1 0.5 -11.0 34 627 A K S < S- 0 0 79 -3,-2.1 2,-0.7 11,-0.1 -1,-0.3 -0.897 80.6-124.0-156.6 122.1 -5.3 -2.3 -9.5 35 628 A K + 0 0 63 -2,-0.3 11,-0.2 1,-0.2 9,-0.1 -0.531 46.6 148.3 -68.8 108.1 -7.8 -2.3 -6.7 36 629 A C + 0 0 1 -2,-0.7 -12,-1.2 9,-0.6 2,-0.7 0.310 40.0 99.0-122.5 3.6 -6.5 -5.1 -4.3 37 630 A I E -CD 23 45A 3 8,-1.3 8,-2.5 -14,-0.2 2,-0.6 -0.844 57.4-159.2 -99.6 110.9 -7.7 -3.6 -1.0 38 631 A Q E -CD 22 44A 48 -16,-2.3 -16,-1.4 -2,-0.7 6,-0.2 -0.788 9.0-159.4 -92.7 120.9 -11.0 -5.0 0.3 39 632 A S E >> - D 0 43A 15 4,-2.7 3,-1.7 -2,-0.6 4,-0.7 -0.419 38.7 -94.4 -92.2 170.4 -12.9 -2.9 2.8 40 633 A E T 34 S+ 0 0 180 1,-0.3 -1,-0.1 -20,-0.3 -19,-0.1 0.656 120.2 74.6 -57.8 -15.1 -15.5 -4.0 5.3 41 634 A D T 34 S- 0 0 141 2,-0.2 -1,-0.3 1,-0.0 3,-0.1 0.223 115.4-113.4 -83.5 15.9 -18.0 -2.9 2.6 42 635 A K T <4 S+ 0 0 169 -3,-1.7 2,-0.3 1,-0.2 -2,-0.2 0.927 81.1 114.2 51.9 49.6 -17.1 -6.1 0.7 43 636 A K E < -D 39 0A 105 -4,-0.7 -4,-2.7 -6,-0.0 2,-0.4 -0.997 64.4-122.8-150.3 146.7 -15.5 -4.0 -2.1 44 637 A W E -D 38 0A 72 -2,-0.3 2,-0.3 -6,-0.2 -6,-0.2 -0.741 27.2-171.4 -94.2 138.2 -12.0 -3.5 -3.5 45 638 A F E -D 37 0A 25 -8,-2.5 -8,-1.3 -2,-0.4 -9,-0.6 -0.921 21.0-120.2-126.7 153.5 -10.5 0.0 -3.7 46 639 A T > - 0 0 20 -2,-0.3 4,-3.1 -11,-0.2 5,-0.4 -0.577 39.2-100.1 -89.4 153.9 -7.4 1.5 -5.3 47 640 A P H > S+ 0 0 7 0, 0.0 4,-0.6 0, 0.0 -15,-0.1 0.715 128.2 43.9 -44.1 -21.3 -4.6 3.2 -3.3 48 641 A R H > S+ 0 0 102 2,-0.2 4,-1.4 -16,-0.1 12,-0.1 0.902 112.9 45.6 -90.4 -52.2 -6.3 6.4 -4.5 49 642 A E H > S+ 0 0 80 1,-0.2 4,-1.0 2,-0.2 -1,-0.1 0.767 115.4 51.9 -62.6 -24.5 -10.0 5.5 -4.0 50 643 A F H X S+ 0 0 1 -4,-3.1 4,-2.7 2,-0.2 5,-0.3 0.851 101.5 58.3 -79.1 -37.2 -9.0 4.2 -0.6 51 644 A E H X>S+ 0 0 0 -4,-0.6 4,-2.6 -5,-0.4 5,-1.2 0.827 104.3 54.4 -60.7 -31.8 -7.2 7.5 0.3 52 645 A I H <5S+ 0 0 78 -4,-1.4 -1,-0.2 3,-0.2 -2,-0.2 0.882 112.3 41.1 -69.6 -40.7 -10.5 9.2 -0.3 53 646 A E H <5S+ 0 0 114 -4,-1.0 -2,-0.2 1,-0.1 -1,-0.2 0.804 123.2 39.7 -78.1 -31.1 -12.4 6.9 2.1 54 647 A G H <5S+ 0 0 14 -4,-2.7 -2,-0.2 -35,-0.1 -3,-0.2 0.915 137.3 9.9 -83.7 -47.9 -9.6 7.0 4.7 55 648 A D T <5S- 0 0 69 -4,-2.6 -3,-0.2 -5,-0.3 -4,-0.1 0.885 104.4 -98.9 -94.1 -75.9 -8.5 10.6 4.5 56 649 A R < - 0 0 196 -5,-1.2 -4,-0.2 0, 0.0 -5,-0.0 0.108 50.8 -90.0 179.0 -40.0 -11.0 12.6 2.4 57 650 A G S > S+ 0 0 29 -6,-0.4 3,-0.7 -7,-0.0 -5,-0.1 0.047 111.0 82.6 133.8 -25.7 -9.6 12.9 -1.2 58 651 A A T 3 + 0 0 98 1,-0.2 3,-0.2 -6,-0.1 -6,-0.1 0.449 64.8 93.7 -86.0 -1.7 -7.7 16.2 -0.9 59 652 A S T 3 - 0 0 42 1,-0.2 2,-2.7 -8,-0.1 -1,-0.2 0.810 63.0-175.6 -59.4 -30.6 -4.7 14.2 0.5 60 653 A K < + 0 0 141 -3,-0.7 2,-0.7 -12,-0.1 -1,-0.2 -0.388 59.8 77.4 68.2 -71.7 -3.4 14.0 -3.0 61 654 A N > + 0 0 68 -2,-2.7 4,-0.9 -3,-0.2 3,-0.3 -0.593 54.2 177.7 -74.0 112.5 -0.4 11.8 -2.1 62 655 A W H > S+ 0 0 29 -2,-0.7 4,-1.6 2,-0.2 11,-0.3 0.690 72.9 73.6 -86.4 -21.9 -1.8 8.2 -1.5 63 656 A K H 4 S+ 0 0 46 1,-0.2 11,-2.9 2,-0.2 12,-0.4 0.698 111.6 29.3 -64.9 -18.9 1.7 6.8 -0.8 64 657 A L H 4 S+ 0 0 91 -3,-0.3 -1,-0.2 9,-0.2 -2,-0.2 0.637 111.2 65.2-111.6 -25.8 1.5 8.6 2.6 65 658 A S H < S+ 0 0 8 -4,-0.9 -48,-0.5 -49,-0.1 2,-0.4 0.779 103.8 51.9 -69.3 -27.7 -2.3 8.6 3.2 66 659 A I < - 0 0 0 -4,-1.6 7,-1.2 -50,-0.2 8,-0.3 -0.882 69.5-160.3-115.1 146.1 -2.3 4.7 3.4 67 660 A R E -BE 15 72A 131 -52,-1.7 -52,-2.6 -2,-0.4 2,-0.3 -0.734 6.4-151.6-117.0 166.6 -0.2 2.4 5.5 68 661 A C E > S-BE 14 71A 0 3,-1.4 3,-1.1 -54,-0.3 -54,-0.3 -0.805 74.2 -38.7-144.8 99.5 0.7 -1.3 5.3 69 662 A G T 3 S- 0 0 36 -56,-0.7 -55,-0.1 -2,-0.3 3,-0.1 0.097 130.3 -34.3 74.4 -27.3 1.4 -3.3 8.4 70 663 A G T 3 S+ 0 0 50 1,-0.5 2,-0.4 -2,-0.2 -1,-0.3 0.047 126.6 69.3 172.3 -43.7 3.3 -0.2 9.7 71 664 A Y E < S-E 68 0A 81 -3,-1.1 -3,-1.4 1,-0.1 -1,-0.5 -0.804 78.1-117.5-102.5 141.5 5.0 1.7 6.9 72 665 A T E > -E 67 0A 26 -2,-0.4 4,-2.8 -5,-0.3 3,-0.4 -0.093 32.9-101.0 -66.6 171.5 3.1 3.6 4.2 73 666 A L H > S+ 0 0 16 -7,-1.2 4,-2.2 -11,-0.3 5,-0.2 0.814 121.8 65.3 -64.8 -29.3 3.3 2.7 0.5 74 667 A K H 4 S+ 0 0 60 -11,-2.9 -1,-0.2 -8,-0.3 4,-0.1 0.907 112.4 33.0 -58.9 -41.9 5.7 5.6 0.1 75 668 A V H >> S+ 0 0 30 -3,-0.4 4,-2.2 -12,-0.4 3,-1.0 0.862 114.6 58.4 -81.4 -38.7 8.2 3.7 2.3 76 669 A L H 3X S+ 0 0 1 -4,-2.8 6,-2.2 1,-0.3 4,-0.6 0.786 110.5 45.1 -61.4 -26.7 7.0 0.2 1.1 77 670 A M H 3< S+ 0 0 25 -4,-2.2 -1,-0.3 -5,-0.2 -2,-0.2 0.549 113.1 52.1 -91.2 -10.8 8.0 1.4 -2.4 78 671 A E H <4 S+ 0 0 81 -3,-1.0 -2,-0.2 -5,-0.2 -3,-0.1 0.698 114.9 38.0 -96.0 -25.8 11.2 2.8 -1.0 79 672 A N H < S- 0 0 24 -4,-2.2 -3,-0.1 16,-0.1 -2,-0.1 0.927 116.3 -87.7 -88.9 -75.2 12.4 -0.3 0.8 80 673 A K S < S+ 0 0 76 -4,-0.6 -3,-0.1 -5,-0.2 -4,-0.1 0.288 95.1 104.8-176.6 -18.3 11.6 -3.4 -1.3 81 674 A F S S+ 0 0 4 -6,-0.2 -4,-0.2 -5,-0.1 -5,-0.1 0.835 88.4 45.3 -48.2 -36.9 8.1 -4.6 -0.3 82 675 A L S S- 0 0 20 -6,-2.2 -53,-0.1 1,-0.2 -1,-0.1 -0.913 74.6-149.0-114.3 138.6 6.8 -3.1 -3.6 83 676 A P + 0 0 79 0, 0.0 -1,-0.2 0, 0.0 4,-0.2 0.952 40.1 138.4 -64.8 -92.7 8.5 -3.6 -7.0 84 677 A E - 0 0 114 -55,-0.3 3,-0.3 2,-0.1 -54,-0.0 0.312 65.2 -46.5 61.3 161.1 7.8 -0.6 -9.2 85 678 A P S S- 0 0 87 0, 0.0 3,-0.0 0, 0.0 0, 0.0 0.062 99.4 -40.8 -52.7 170.0 10.5 1.0 -11.5 86 679 A P - 0 0 129 0, 0.0 -2,-0.1 0, 0.0 0, 0.0 -0.086 59.3-164.7 -39.3 102.8 14.1 1.7 -10.1 87 680 A S - 0 0 67 -3,-0.3 -9,-0.0 -4,-0.2 -8,-0.0 0.974 55.9 -68.2 -57.7 -60.1 13.4 3.0 -6.6 88 681 A T - 0 0 61 1,-0.2 2,-0.2 -10,-0.0 -10,-0.0 0.015 66.3 -90.9-156.9 -87.4 16.8 4.4 -6.0 89 682 A R - 0 0 232 0, 0.0 3,-0.3 0, 0.0 2,-0.2 -0.830 53.9 -41.0-174.6-147.0 20.0 2.3 -5.6 90 683 A K S S+ 0 0 178 -2,-0.2 0, 0.0 1,-0.2 0, 0.0 -0.642 107.9 30.3-104.5 163.5 22.1 0.6 -3.0 91 684 A K S S+ 0 0 200 -2,-0.2 2,-0.3 1,-0.2 -1,-0.2 0.901 82.4 162.6 57.4 43.9 23.1 1.8 0.5 92 685 A V - 0 0 66 -3,-0.3 -1,-0.2 1,-0.1 -4,-0.0 -0.713 37.1-115.6 -96.8 146.2 19.9 3.8 0.8 93 686 A T S S+ 0 0 116 -2,-0.3 -1,-0.1 2,-0.0 0, 0.0 -0.225 77.1 40.8 -73.4 166.9 18.6 5.1 4.1 94 687 A I 0 0 114 -15,-0.0 -2,-0.1 -2,-0.0 0, 0.0 0.617 360.0 360.0 65.8 134.3 15.3 4.0 5.7 95 688 A K 0 0 134 -94,-0.0 -16,-0.1 -15,-0.0 -17,-0.1 -0.357 360.0 360.0-111.0 360.0 14.1 0.4 5.6