==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=3-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER TRANSLATION FACTOR 23-FEB-01 1H95 . COMPND 2 MOLECULE: Y-BOX BINDING PROTEIN; . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR C.P.A.M.KLOKS,C.A.E.M.SPRONK,A.HOFFMANN,G.W.VUISTER, . 79 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 6647.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 48 60.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 5 6.3 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 25 31.6 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 2 2.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 1 1.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 10 12.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 3 3.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 2 2.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 2 2.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 2 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A M 0 0 175 0, 0.0 4,-0.1 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 176.6 2.2 -20.6 3.2 2 2 A K - 0 0 212 2,-0.1 3,-0.1 3,-0.1 0, 0.0 0.981 360.0 -21.6 -72.0 -61.3 5.9 -20.7 2.7 3 3 A K S S+ 0 0 139 1,-0.4 2,-0.1 2,-0.1 0, 0.0 0.543 114.9 14.6-116.6 -98.6 7.1 -17.2 1.7 4 4 A V - 0 0 57 1,-0.1 -1,-0.4 61,-0.1 60,-0.2 -0.300 56.8-140.1 -82.9 167.0 4.9 -14.5 0.2 5 5 A I - 0 0 50 58,-1.8 2,-0.3 1,-0.3 59,-0.1 0.919 59.5 -52.4 -91.4 -61.5 1.1 -14.4 0.2 6 6 A A E -A 63 0A 36 57,-1.4 57,-2.7 3,-0.0 -1,-0.3 -0.986 34.8-111.9-164.8 173.2 0.2 -13.1 -3.2 7 7 A T E S+ 0 0 86 -2,-0.3 55,-0.2 55,-0.3 67,-0.1 -0.757 89.7 28.9-109.5 160.2 0.3 -10.6 -6.1 8 8 A K E S+ 0 0 175 -2,-0.3 2,-0.3 1,-0.2 54,-0.2 0.893 81.0 164.2 60.0 49.8 -2.5 -8.3 -7.3 9 9 A V E -A 61 0A 14 52,-3.5 52,-2.3 -3,-0.2 2,-0.3 -0.736 27.9-143.3-109.6 143.8 -4.2 -8.0 -3.9 10 10 A L E +A 60 0A 82 -2,-0.3 18,-0.5 50,-0.2 2,-0.3 -0.772 35.7 123.4-106.7 149.9 -6.8 -5.4 -2.8 11 11 A G E -A 59 0A 6 48,-1.0 48,-1.3 -2,-0.3 2,-0.5 -0.980 54.5 -64.0 178.4-167.0 -7.2 -3.8 0.6 12 12 A T E -AB 58 26A 62 14,-1.1 14,-2.8 -2,-0.3 2,-0.4 -0.842 33.2-149.2-116.4 120.9 -7.3 -0.6 2.6 13 13 A V E + B 0 25A 24 44,-2.2 43,-0.5 -2,-0.5 44,-0.5 -0.709 23.3 177.8 -87.8 130.4 -4.5 1.9 2.9 14 14 A K E + B 0 24A 107 10,-2.7 10,-1.8 -2,-0.4 41,-0.0 -0.917 47.8 8.5-133.0 159.7 -4.3 3.8 6.2 15 15 A W E - 0 0 195 -2,-0.3 2,-0.6 1,-0.2 -1,-0.2 0.832 62.8-170.9 37.1 63.7 -2.1 6.4 7.8 16 16 A F E - 0 0 87 7,-0.2 2,-0.8 -3,-0.1 7,-0.3 -0.677 10.5-152.8 -79.5 118.2 0.2 7.4 5.1 17 17 A N E >> - B 0 22A 60 5,-3.2 4,-2.3 -2,-0.6 5,-1.6 -0.839 10.5-172.5 -95.1 107.2 3.0 9.6 6.4 18 18 A V T 45S+ 0 0 112 -2,-0.8 -1,-0.2 3,-0.2 5,-0.1 0.808 73.9 67.4 -71.3 -34.0 4.1 11.8 3.6 19 19 A R T 45S+ 0 0 243 1,-0.2 -1,-0.2 3,-0.1 -2,-0.0 0.858 121.3 17.7 -65.4 -38.4 7.1 13.4 5.3 20 20 A N T 45S- 0 0 120 -3,-0.3 -1,-0.2 2,-0.2 -2,-0.2 0.753 108.7-122.2 -95.1 -35.0 9.0 10.2 5.4 21 21 A G T <5 + 0 0 0 -4,-2.3 17,-2.1 1,-0.3 2,-0.3 0.826 65.2 120.8 99.9 40.7 6.9 8.4 2.8 22 22 A Y E < +BC 17 37A 127 -5,-1.6 -5,-3.2 15,-0.2 -1,-0.3 -0.963 24.0 154.7-132.9 146.4 5.6 5.4 4.5 23 23 A G E - C 0 36A 4 13,-2.6 13,-2.4 -2,-0.3 2,-0.3 -0.867 29.1-118.9-149.9-171.7 2.2 4.0 5.3 24 24 A F E -BC 14 35A 58 -10,-1.8 -10,-2.7 -2,-0.3 2,-0.4 -0.982 10.5-142.2-141.3 153.4 0.5 0.7 6.0 25 25 A I E -BC 13 34A 1 9,-3.1 9,-1.7 -2,-0.3 2,-1.2 -0.900 16.8-132.4-112.4 141.5 -2.2 -1.4 4.5 26 26 A N E -BC 12 33A 51 -14,-2.8 -14,-1.1 -2,-0.4 2,-0.5 -0.765 27.4-146.4 -91.9 91.2 -4.8 -3.5 6.4 27 27 A R E >>> - C 0 32A 20 5,-2.1 5,-2.0 -2,-1.2 4,-0.5 -0.507 14.1-138.3 -65.1 110.9 -4.4 -6.7 4.4 28 28 A N G >45S+ 0 0 76 -2,-0.5 3,-0.5 -18,-0.5 -1,-0.1 0.694 79.3 65.9 -54.1 -47.6 -8.0 -8.1 4.4 29 29 A D G 345S- 0 0 127 1,-0.3 -1,-0.2 2,-0.1 -2,-0.0 0.854 129.4 -5.4 -56.6 -49.1 -8.1 -11.8 5.0 30 30 A T G <45S- 0 0 102 -3,-0.5 -1,-0.3 0, 0.0 -2,-0.2 -0.046 106.3 -99.1-136.3 35.7 -6.8 -12.1 8.6 31 31 A K T <<5 - 0 0 136 -4,-0.5 2,-0.2 -3,-0.5 -3,-0.2 0.941 58.3-177.5 57.3 63.3 -5.9 -8.4 9.0 32 32 A E E < -C 27 0A 81 -5,-2.0 -5,-2.1 1,-0.1 2,-0.6 -0.616 29.8-106.9-107.8 151.3 -2.2 -8.6 8.4 33 33 A D E +C 26 0A 55 -2,-0.2 37,-0.9 -7,-0.2 2,-0.6 -0.612 35.1 178.3 -84.6 112.2 0.4 -5.8 8.5 34 34 A V E -Cd 25 70A 0 -9,-1.7 -9,-3.1 -2,-0.6 2,-0.4 -0.949 14.7-154.0-113.9 111.9 1.6 -4.7 5.1 35 35 A F E -Cd 24 71A 101 35,-1.8 37,-0.8 -2,-0.6 2,-0.4 -0.736 13.0-165.6 -88.3 134.9 4.1 -1.9 5.2 36 36 A V E -C 23 0A 5 -13,-2.4 -13,-2.6 -2,-0.4 2,-0.3 -0.955 4.4-165.0-130.9 133.6 4.2 0.3 2.0 37 37 A H E > -C 22 0A 47 -2,-0.4 3,-1.8 35,-0.3 4,-0.5 -0.843 32.9-111.7-117.4 154.7 6.8 2.8 0.9 38 38 A Q G > S+ 0 0 104 -17,-2.1 3,-0.7 -2,-0.3 -16,-0.1 0.756 111.3 61.9 -54.1 -31.1 6.8 5.5 -1.7 39 39 A T G 3 S+ 0 0 117 1,-0.2 -1,-0.3 -18,-0.2 -18,-0.0 0.642 97.9 58.0 -75.9 -12.1 9.3 3.8 -4.0 40 40 A A G < S+ 0 0 26 -3,-1.8 35,-1.8 33,-0.1 2,-0.2 0.627 84.9 100.0 -89.5 -15.2 6.9 0.8 -4.5 41 41 A I B < S-f 75 0B 45 -3,-0.7 35,-0.2 -4,-0.5 4,-0.1 -0.501 73.8-123.4 -74.2 133.0 4.2 3.1 -5.9 42 42 A K - 0 0 113 33,-2.7 -1,-0.1 -2,-0.2 2,-0.1 -0.150 62.6 -9.4 -72.6 168.3 3.9 3.2 -9.7 43 43 A K S S- 0 0 187 1,-0.0 2,-0.3 2,-0.0 -2,-0.0 -0.193 103.9 -46.8 56.7-118.5 4.1 6.0 -12.2 44 44 A N - 0 0 126 -2,-0.1 -2,-0.1 2,-0.0 -1,-0.0 -0.976 39.8-154.3-151.9 142.4 4.1 9.5 -10.6 45 45 A N - 0 0 105 -2,-0.3 -2,-0.0 -4,-0.1 -4,-0.0 -0.958 20.3-150.0-118.6 107.7 2.0 11.1 -7.9 46 46 A P - 0 0 85 0, 0.0 2,-0.6 0, 0.0 -2,-0.0 -0.217 20.2-113.9 -75.3 176.6 1.8 14.9 -8.2 47 47 A R S S+ 0 0 252 -2,-0.0 2,-0.3 0, 0.0 -2,-0.0 -0.445 78.8 76.5-112.2 60.1 1.3 17.3 -5.3 48 48 A K + 0 0 168 -2,-0.6 0, 0.0 1,-0.1 0, 0.0 -0.925 50.6 57.1-156.8 173.1 -2.1 18.7 -6.0 49 49 A Y - 0 0 198 -2,-0.3 3,-0.1 3,-0.0 -1,-0.1 0.552 45.6-138.6 70.8 144.4 -5.9 18.3 -6.0 50 50 A L S S+ 0 0 152 1,-0.2 2,-0.7 2,-0.1 3,-0.3 0.861 72.0 58.3 -93.3 -81.3 -8.3 17.5 -3.2 51 51 A R + 0 0 209 1,-0.2 -1,-0.2 2,-0.0 3,-0.1 -0.412 52.0 118.8 -78.8 107.7 -11.2 15.1 -3.8 52 52 A S S S- 0 0 93 -2,-0.7 -1,-0.2 -3,-0.1 -2,-0.1 0.626 92.7 -46.6-117.2 -67.9 -10.3 11.6 -5.0 53 53 A V - 0 0 92 -3,-0.3 2,-0.3 1,-0.1 -2,-0.0 0.405 67.3-137.7-128.3 -77.9 -11.6 9.2 -2.3 54 54 A G - 0 0 48 -3,-0.1 3,-0.4 -4,-0.0 2,-0.2 -0.986 57.9 -4.5 145.6-144.2 -10.9 10.2 1.3 55 55 A D S S+ 0 0 160 -2,-0.3 -41,-0.1 1,-0.2 -42,-0.0 -0.566 122.4 27.5 -80.8 146.9 -9.8 8.0 4.2 56 56 A G S S- 0 0 40 -43,-0.5 -1,-0.2 -2,-0.2 -42,-0.1 0.907 80.8-177.5 69.2 45.3 -9.5 4.3 3.7 57 57 A E - 0 0 71 -44,-0.5 -44,-2.2 -3,-0.4 2,-0.4 -0.356 24.4-119.0 -75.0 152.5 -8.8 4.2 -0.0 58 58 A T E +A 12 0A 83 -46,-0.2 2,-0.3 -2,-0.1 -46,-0.2 -0.783 36.8 168.8 -97.9 138.2 -8.5 1.0 -2.0 59 59 A V E -A 11 0A 8 -48,-1.3 -48,-1.0 -2,-0.4 2,-0.4 -0.946 31.2-120.3-143.3 151.5 -5.3 0.3 -3.8 60 60 A E E +A 10 0A 92 -2,-0.3 16,-2.2 -50,-0.2 2,-0.3 -0.827 42.3 151.6 -98.3 143.3 -3.8 -2.8 -5.5 61 61 A F E -A 9 0A 1 -52,-2.3 -52,-3.5 -2,-0.4 2,-0.4 -0.983 45.8-107.6-157.9 161.0 -0.6 -4.3 -4.2 62 62 A D E - E 0 73A 18 11,-2.7 11,-0.9 -2,-0.3 2,-0.9 -0.800 27.8-138.3 -88.6 142.8 1.4 -7.5 -4.0 63 63 A V E +AE 6 72A 1 -57,-2.7 -58,-1.8 -2,-0.4 -57,-1.4 -0.849 38.9 176.3-100.7 97.6 1.5 -8.9 -0.4 64 64 A V E - E 0 71A 25 7,-1.8 7,-3.2 -2,-0.9 2,-0.3 -0.806 38.2 -86.7-123.2 144.9 5.1 -9.9 -0.4 65 65 A E E + E 0 70A 90 -2,-0.3 5,-0.3 5,-0.2 -61,-0.1 -0.265 54.2 166.7 -59.6 111.6 7.4 -11.3 2.3 66 66 A G - 0 0 19 3,-1.1 -1,-0.1 -2,-0.3 4,-0.1 0.560 50.8 -66.3 -89.1-128.0 8.9 -8.6 4.3 67 67 A E S S+ 0 0 204 3,-0.1 4,-0.1 0, 0.0 -2,-0.0 0.842 123.2 5.6-100.4 -71.2 10.7 -8.7 7.6 68 68 A K S S- 0 0 159 2,-0.1 -3,-0.0 -3,-0.0 0, 0.0 0.755 141.5 -35.3 -83.0 -26.2 8.3 -9.8 10.2 69 69 A G S S- 0 0 30 -5,-0.1 -3,-1.1 -36,-0.1 2,-0.3 0.141 104.4 -4.9-161.6 -89.0 5.4 -10.5 7.9 70 70 A A E +dE 34 65A 9 -37,-0.9 -35,-1.8 -5,-0.3 -5,-0.2 -0.980 35.4 178.6-144.3 149.1 4.6 -8.5 4.8 71 71 A E E -dE 35 64A 102 -7,-3.2 -7,-1.8 -2,-0.3 2,-0.4 -0.561 31.8-107.7-122.4-162.9 5.4 -5.5 2.6 72 72 A A E + E 0 63A 8 -37,-0.8 -35,-0.3 -9,-0.2 2,-0.3 -0.992 28.0 176.0-146.8 133.4 4.0 -4.3 -0.7 73 73 A A E + E 0 62A 30 -11,-0.9 -11,-2.7 -2,-0.4 -33,-0.1 -0.872 63.4 27.9-133.1 162.0 5.2 -4.2 -4.3 74 74 A N S S- 0 0 84 -2,-0.3 2,-0.3 -13,-0.2 -1,-0.2 0.896 80.4-173.2 51.0 51.6 3.7 -3.1 -7.6 75 75 A V B +f 41 0B 3 -35,-1.8 -33,-2.7 -3,-0.2 -14,-0.2 -0.607 11.4 179.7 -92.9 129.9 1.5 -0.6 -5.9 76 76 A T - 0 0 47 -16,-2.2 -1,-0.1 -2,-0.3 -34,-0.1 0.388 12.1-143.3 -96.3-134.3 -1.2 1.3 -7.8 77 77 A G - 0 0 26 -36,-0.1 -17,-0.1 2,-0.1 -18,-0.1 -0.939 39.9 -76.0 177.5 176.8 -3.8 3.9 -6.7 78 78 A P 0 0 63 0, 0.0 -19,-0.1 0, 0.0 -20,-0.0 0.444 360.0 360.0 -71.1 -2.3 -7.3 4.9 -7.4 79 79 A G 0 0 121 0, 0.0 -2,-0.1 0, 0.0 -27,-0.0 -0.384 360.0 360.0 166.9 360.0 -6.5 6.6 -10.7