==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=20-JUL-2011 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER DNA BINDING PROTEIN 12-JUN-06 2H9U . COMPND 2 MOLECULE: DNA/RNA-BINDING PROTEIN ALBA 2; . SOURCE 2 ORGANISM_SCIENTIFIC: AEROPYRUM PERNIX; . AUTHOR T.S.KUMAREVEL,K.SAKAMOTO,A.SHINKAI,S.YOKOYAMA,RIKEN STRUCTUR . 101 1 1 1 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 7065.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 73 72.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 4 4.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 25 24.8 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 1 1.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 10 9.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 10 9.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 24 23.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 2 A A 0 0 55 0, 0.0 64,-0.1 0, 0.0 63,-0.0 0.000 360.0 360.0 360.0 163.9 22.0 9.2 35.7 2 3 A a > - 0 0 11 1,-0.2 3,-1.2 2,-0.1 2,-0.1 0.861 360.0-176.0 59.1 39.3 23.9 12.2 34.4 3 4 A E T 3 + 0 0 151 1,-0.2 -1,-0.2 0, 0.0 0, 0.0 -0.453 67.2 16.3 -66.7 136.3 20.7 14.3 34.4 4 5 A G T 3 S+ 0 0 86 1,-0.3 -1,-0.2 -2,-0.1 3,-0.1 0.146 88.3 137.7 89.2 -21.6 21.4 17.8 33.0 5 6 A A < - 0 0 16 -3,-1.2 -1,-0.3 1,-0.1 29,-0.2 -0.167 64.9 -94.2 -57.2 151.6 24.7 16.9 31.4 6 7 A P - 0 0 59 0, 0.0 29,-2.3 0, 0.0 2,-0.4 -0.339 44.2-127.6 -66.3 155.9 25.2 18.4 27.9 7 8 A E E -a 35 0A 102 27,-0.2 2,-0.6 -3,-0.1 29,-0.2 -0.900 17.8-164.5-115.7 136.4 24.2 16.1 25.0 8 9 A V E -a 36 0A 13 27,-3.1 29,-2.3 -2,-0.4 2,-0.6 -0.938 16.8-161.9-112.9 107.5 26.1 15.0 21.9 9 10 A R E -a 37 0A 127 -2,-0.6 2,-0.7 27,-0.2 29,-0.2 -0.817 18.6-126.6 -96.4 126.2 23.6 13.5 19.4 10 11 A I + 0 0 9 27,-2.9 29,-0.4 -2,-0.6 36,-0.1 -0.582 46.9 150.9 -74.8 110.8 25.1 11.3 16.7 11 12 A G - 0 0 23 -2,-0.7 -1,-0.1 3,-0.1 7,-0.1 0.039 59.2 -52.5-113.5-139.6 24.0 12.6 13.3 12 13 A R S S+ 0 0 200 2,-0.1 3,-0.1 -2,-0.0 -2,-0.1 0.706 97.6 98.3 -79.8 -23.6 25.2 12.7 9.7 13 14 A K S S- 0 0 122 1,-0.1 5,-0.1 2,-0.1 2,-0.0 -0.155 90.4 -78.9 -63.6 161.1 28.6 14.3 10.3 14 15 A P >> - 0 0 86 0, 0.0 3,-2.5 0, 0.0 4,-0.9 -0.353 37.3-117.2 -62.0 140.6 31.7 12.1 10.5 15 16 A V H 3> S+ 0 0 29 1,-0.3 4,-2.1 2,-0.2 5,-0.2 0.794 114.5 69.0 -47.0 -31.3 32.3 10.2 13.8 16 17 A M H 3> S+ 0 0 152 1,-0.2 4,-1.7 2,-0.2 -1,-0.3 0.848 95.1 53.6 -58.4 -35.9 35.4 12.3 14.1 17 18 A N H <> S+ 0 0 64 -3,-2.5 4,-1.8 2,-0.2 -1,-0.2 0.883 108.9 46.9 -68.3 -39.9 33.3 15.4 14.6 18 19 A Y H X S+ 0 0 23 -4,-0.9 4,-2.7 2,-0.2 -2,-0.2 0.843 108.2 55.3 -72.2 -33.6 31.4 13.9 17.5 19 20 A V H X S+ 0 0 7 -4,-2.1 4,-2.8 1,-0.2 5,-0.2 0.939 109.2 49.3 -62.4 -42.7 34.5 12.7 19.2 20 21 A L H X S+ 0 0 107 -4,-1.7 4,-3.2 1,-0.2 5,-0.3 0.897 110.7 49.3 -62.3 -41.5 35.8 16.3 19.0 21 22 A A H X S+ 0 0 34 -4,-1.8 4,-2.5 2,-0.2 -1,-0.2 0.916 111.8 49.0 -64.8 -43.2 32.6 17.6 20.5 22 23 A I H X S+ 0 0 0 -4,-2.7 4,-2.5 2,-0.2 -2,-0.2 0.959 116.9 40.9 -60.3 -52.4 32.7 15.0 23.3 23 24 A L H X S+ 0 0 19 -4,-2.8 4,-1.8 2,-0.2 -2,-0.2 0.931 115.0 49.9 -63.2 -47.7 36.4 15.8 24.1 24 25 A T H < S+ 0 0 81 -4,-3.2 4,-0.4 -5,-0.2 -1,-0.2 0.923 113.5 48.0 -58.2 -43.1 36.0 19.6 23.7 25 26 A T H >< S+ 0 0 26 -4,-2.5 3,-1.1 -5,-0.3 -1,-0.2 0.919 112.7 47.3 -63.4 -44.9 33.0 19.5 26.0 26 27 A L H 3< S+ 0 0 1 -4,-2.5 -1,-0.2 1,-0.2 -2,-0.2 0.695 99.7 68.5 -71.4 -19.6 34.7 17.3 28.6 27 28 A M T 3< S+ 0 0 113 -4,-1.8 -1,-0.2 -3,-0.2 2,-0.2 0.645 75.3 105.7 -74.3 -13.9 37.8 19.6 28.6 28 29 A E S X S- 0 0 105 -3,-1.1 3,-1.5 -4,-0.4 -3,-0.0 -0.489 76.5-131.3 -67.9 133.7 35.8 22.4 30.2 29 30 A Q T 3 S+ 0 0 168 1,-0.3 -1,-0.1 -2,-0.2 -3,-0.0 0.853 102.9 42.7 -55.0 -41.3 36.8 22.7 33.9 30 31 A G T 3 S+ 0 0 77 1,-0.1 2,-0.5 2,-0.0 -1,-0.3 0.315 100.3 78.4 -92.4 10.6 33.2 22.8 35.2 31 32 A T < + 0 0 29 -3,-1.5 -3,-0.1 -6,-0.1 -1,-0.1 -0.940 39.5 159.9-123.8 111.2 31.8 20.0 33.0 32 33 A N + 0 0 62 -2,-0.5 64,-2.4 63,-0.1 2,-0.3 0.422 61.9 57.5-106.6 -1.9 32.6 16.4 34.1 33 34 A Q E + B 0 95A 51 62,-0.2 2,-0.3 -8,-0.1 62,-0.2 -0.977 48.9 172.0-135.8 145.6 29.8 14.6 32.2 34 35 A V E - B 0 94A 0 60,-2.1 60,-3.1 -2,-0.3 2,-0.5 -0.979 19.7-145.0-150.0 134.9 28.5 14.3 28.6 35 36 A V E -aB 7 93A 11 -29,-2.3 -27,-3.1 -2,-0.3 2,-0.5 -0.872 7.0-154.6-105.6 132.1 25.8 12.0 27.2 36 37 A V E -aB 8 92A 0 56,-3.0 56,-2.9 -2,-0.5 2,-0.3 -0.915 18.5-175.1-105.3 129.3 26.1 10.6 23.8 37 38 A K E +aB 9 91A 53 -29,-2.3 -27,-2.9 -2,-0.5 2,-0.3 -0.943 10.5 157.4-128.7 149.0 22.8 9.7 22.1 38 39 A A E - B 0 90A 7 52,-1.8 52,-2.3 -2,-0.3 2,-0.3 -0.985 20.7-147.4-162.0 160.3 21.7 8.0 18.9 39 40 A R E > - B 0 89A 128 -29,-0.4 3,-1.7 -2,-0.3 50,-0.3 -0.932 58.0 -17.9-133.9 157.5 18.9 6.2 17.3 40 41 A G T > S- 0 0 35 48,-2.6 3,-1.9 -2,-0.3 4,-0.3 -0.140 128.5 -1.2 53.3-135.5 18.6 3.4 14.7 41 42 A R T >> S+ 0 0 153 1,-0.3 3,-0.7 2,-0.2 4,-0.5 0.688 125.3 70.0 -61.2 -20.6 21.7 2.7 12.5 42 43 A N H <> S+ 0 0 20 -3,-1.7 4,-2.0 1,-0.2 -1,-0.3 0.583 77.0 82.6 -74.2 -10.4 23.6 5.6 14.3 43 44 A I H <> S+ 0 0 34 -3,-1.9 4,-2.1 1,-0.2 -1,-0.2 0.915 88.5 51.8 -60.7 -41.9 23.8 3.5 17.5 44 45 A N H <> S+ 0 0 117 -3,-0.7 4,-2.0 -4,-0.3 -1,-0.2 0.891 110.7 49.7 -60.4 -38.9 26.8 1.6 16.2 45 46 A R H X S+ 0 0 52 -4,-0.5 4,-2.4 2,-0.2 -1,-0.2 0.818 105.3 55.4 -71.7 -31.3 28.4 5.0 15.4 46 47 A A H X S+ 0 0 0 -4,-2.0 4,-2.3 2,-0.2 -1,-0.2 0.925 109.1 48.6 -65.2 -43.6 27.7 6.3 18.9 47 48 A V H X S+ 0 0 58 -4,-2.1 4,-2.7 2,-0.2 -2,-0.2 0.912 110.5 51.2 -62.7 -41.8 29.5 3.3 20.3 48 49 A D H X S+ 0 0 86 -4,-2.0 4,-2.4 2,-0.2 -2,-0.2 0.939 109.7 49.0 -60.4 -49.1 32.5 3.9 18.0 49 50 A A H X S+ 0 0 0 -4,-2.4 4,-2.0 1,-0.2 -1,-0.2 0.913 113.9 46.7 -57.0 -45.2 32.7 7.6 19.0 50 51 A V H X S+ 0 0 2 -4,-2.3 4,-3.3 1,-0.2 -1,-0.2 0.899 111.6 50.4 -66.4 -40.2 32.7 6.7 22.7 51 52 A E H X S+ 0 0 70 -4,-2.7 4,-2.5 2,-0.2 5,-0.2 0.859 107.1 53.7 -68.3 -33.5 35.2 3.9 22.3 52 53 A I H X S+ 0 0 78 -4,-2.4 4,-1.5 -5,-0.2 -1,-0.2 0.960 114.3 42.9 -63.2 -47.3 37.6 6.2 20.4 53 54 A V H X S+ 0 0 0 -4,-2.0 4,-2.1 1,-0.2 3,-0.3 0.946 114.0 50.5 -61.2 -51.1 37.3 8.6 23.4 54 55 A R H < S+ 0 0 66 -4,-3.3 7,-0.2 1,-0.2 -1,-0.2 0.867 112.5 46.2 -55.9 -41.8 37.6 5.8 26.0 55 56 A K H >< S+ 0 0 146 -4,-2.5 3,-0.5 1,-0.2 -1,-0.2 0.759 111.7 50.9 -76.0 -25.4 40.7 4.3 24.4 56 57 A R H 3< S+ 0 0 154 -4,-1.5 -2,-0.2 -3,-0.3 -1,-0.2 0.834 127.5 24.1 -79.4 -32.7 42.4 7.6 24.0 57 58 A F T >X S+ 0 0 69 -4,-2.1 4,-1.9 -5,-0.2 3,-1.7 -0.307 76.1 151.7-125.6 47.3 41.8 8.6 27.6 58 59 A A T <4 S+ 0 0 51 -3,-0.5 -1,-0.1 1,-0.3 -3,-0.1 0.683 71.0 54.1 -52.7 -21.0 41.4 5.1 29.1 59 60 A K T 34 S+ 0 0 206 -3,-0.1 -1,-0.3 1,-0.1 3,-0.1 0.653 119.9 21.6 -94.1 -14.4 42.7 6.3 32.5 60 61 A N T <4 S+ 0 0 35 -3,-1.7 37,-2.9 1,-0.2 2,-0.5 0.486 105.7 72.1-131.8 -4.0 40.4 9.3 33.2 61 62 A I E < -C 96 0A 6 -4,-1.9 2,-0.3 35,-0.2 35,-0.2 -0.964 59.2-177.1-119.1 119.2 37.2 8.9 31.2 62 63 A E E -C 95 0A 91 33,-2.8 33,-2.7 -2,-0.5 2,-1.0 -0.807 33.5-118.7-113.4 153.5 34.7 6.2 32.3 63 64 A I E -C 94 0A 54 -2,-0.3 31,-0.2 31,-0.2 3,-0.1 -0.811 34.3-179.0 -90.9 103.2 31.4 5.0 30.9 64 65 A K E - 0 0 98 29,-1.7 2,-0.3 -2,-1.0 -1,-0.2 0.839 58.5 -6.0 -74.6 -36.6 29.2 5.8 33.9 65 66 A D E -C 93 0A 45 28,-1.1 28,-2.9 -64,-0.1 2,-0.4 -0.987 52.4-164.3-161.3 150.7 25.8 4.6 32.5 66 67 A I E +C 92 0A 87 -2,-0.3 2,-0.3 26,-0.2 26,-0.2 -0.998 10.6 176.4-140.5 134.3 24.2 3.2 29.4 67 68 A K E -C 91 0A 97 24,-2.2 24,-2.3 -2,-0.4 2,-0.3 -0.991 9.9-162.4-136.9 143.3 20.5 2.8 28.6 68 69 A I E +C 90 0A 132 -2,-0.3 2,-0.3 22,-0.2 22,-0.2 -0.914 19.2 158.3-121.9 154.5 18.7 1.6 25.5 69 70 A D E -C 89 0A 105 20,-1.8 20,-2.7 -2,-0.3 2,-0.3 -0.858 25.1-134.9-156.5-175.1 15.1 2.3 24.7 70 71 A S E -C 88 0A 35 18,-0.3 2,-0.4 -2,-0.3 18,-0.3 -0.984 7.3-143.4-155.0 148.9 12.8 2.4 21.7 71 72 A Q E -C 87 0A 108 16,-2.8 16,-2.2 -2,-0.3 2,-0.6 -0.908 14.1-134.5-116.0 142.9 10.1 4.7 20.3 72 73 A E E -C 86 0A 98 -2,-0.4 2,-0.4 14,-0.2 14,-0.2 -0.855 25.1-168.6 -94.9 123.1 6.9 3.8 18.6 73 74 A I E -C 85 0A 78 12,-3.1 12,-1.9 -2,-0.6 2,-0.3 -0.919 9.0-179.4-111.5 141.1 6.4 6.0 15.5 74 75 A E E -C 84 0A 102 -2,-0.4 2,-0.3 10,-0.2 10,-0.2 -0.969 18.7-169.0-141.9 156.8 3.1 6.0 13.7 75 76 A V E -C 83 0A 90 8,-2.1 8,-2.5 -2,-0.3 2,-0.4 -0.925 20.2-135.5-134.9 157.4 1.4 7.5 10.7 76 77 A Q E -C 82 0A 124 -2,-0.3 6,-0.2 6,-0.2 -2,-0.0 -0.939 13.8-130.9-117.7 140.6 -2.3 7.4 9.9 77 78 A T > - 0 0 28 4,-2.7 3,-2.0 -2,-0.4 4,-0.0 -0.524 33.0-108.8 -80.9 158.4 -3.6 6.7 6.4 78 79 A P T 3 S+ 0 0 135 0, 0.0 -1,-0.1 0, 0.0 -2,-0.0 0.779 120.1 58.0 -60.4 -20.6 -6.3 9.1 5.3 79 80 A E T 3 S- 0 0 176 2,-0.1 -2,-0.0 1,-0.0 -3,-0.0 0.166 127.0 -94.8 -94.0 17.7 -8.8 6.3 5.7 80 81 A G S < S+ 0 0 64 -3,-2.0 2,-0.5 1,-0.2 -4,-0.0 0.635 75.4 141.6 84.5 14.3 -8.0 5.7 9.4 81 82 A Q - 0 0 101 -4,-0.0 -4,-2.7 2,-0.0 2,-0.4 -0.791 41.1-143.8 -93.1 129.7 -5.4 2.9 9.2 82 83 A T E - C 0 76A 78 -2,-0.5 2,-0.4 -6,-0.2 -6,-0.2 -0.752 14.9-171.2 -92.4 135.1 -2.6 3.2 11.7 83 84 A R E - C 0 75A 151 -8,-2.5 -8,-2.1 -2,-0.4 2,-0.3 -0.996 11.3-178.2-127.2 127.2 0.9 2.0 10.6 84 85 A T E + C 0 74A 67 -2,-0.4 2,-0.3 -10,-0.2 -10,-0.2 -0.888 16.0 176.3-130.4 160.4 3.7 1.8 13.1 85 86 A R E - C 0 73A 202 -12,-1.9 -12,-3.1 -2,-0.3 2,-0.4 -0.964 26.0-124.8-152.2 154.6 7.4 1.0 13.4 86 87 A R E - C 0 72A 145 -2,-0.3 2,-0.5 -14,-0.2 -14,-0.2 -0.850 15.4-161.9-108.1 144.8 9.8 1.0 16.3 87 88 A V E - C 0 71A 44 -16,-2.2 -16,-2.8 -2,-0.4 2,-0.1 -0.996 15.4-140.0-126.3 125.4 13.1 2.9 16.4 88 89 A S E - C 0 70A 66 -2,-0.5 -48,-2.6 -18,-0.3 2,-0.3 -0.463 18.5-169.8 -83.5 156.8 15.7 2.0 18.9 89 90 A S E -BC 39 69A 28 -20,-2.7 -20,-1.8 -50,-0.3 2,-0.3 -0.944 9.3-157.8-142.3 162.2 17.9 4.5 20.8 90 91 A I E -BC 38 68A 18 -52,-2.3 -52,-1.8 -2,-0.3 2,-0.4 -0.990 0.9-166.2-141.8 145.0 20.9 4.4 23.0 91 92 A E E -BC 37 67A 71 -24,-2.3 -24,-2.2 -2,-0.3 2,-0.5 -0.993 7.5-172.9-134.8 126.0 22.2 6.9 25.6 92 93 A I E -BC 36 66A 5 -56,-2.9 -56,-3.0 -2,-0.4 2,-0.6 -0.976 10.5-152.7-123.6 121.5 25.8 6.7 27.0 93 94 A a E -BC 35 65A 4 -28,-2.9 -29,-1.7 -2,-0.5 -28,-1.1 -0.830 9.5-165.4 -97.8 125.5 27.0 8.9 29.8 94 95 A L E -BC 34 63A 0 -60,-3.1 -60,-2.1 -2,-0.6 2,-0.4 -0.902 4.6-168.2-107.8 133.6 30.7 9.5 29.9 95 96 A E E -BC 33 62A 46 -33,-2.7 -33,-2.8 -2,-0.4 2,-0.3 -0.986 10.9-144.0-127.8 132.5 32.3 11.0 33.0 96 97 A K E - C 0 61A 8 -64,-2.4 -35,-0.2 -2,-0.4 4,-0.1 -0.686 35.8 -93.1 -92.1 144.4 35.8 12.4 33.4 97 98 A A - 0 0 51 -37,-2.9 -1,-0.1 -2,-0.3 -37,-0.0 -0.228 64.7 -71.0 -55.8 143.2 37.8 11.9 36.6 98 99 A G S S- 0 0 64 1,-0.1 -2,-0.1 -3,-0.1 -1,-0.1 0.473 102.0 -50.7 3.1 -73.1 37.5 14.7 39.2 99 100 A E S S- 0 0 72 1,-0.1 2,-0.3 -69,-0.0 -1,-0.1 0.391 96.2 -54.1-141.7 -67.4 39.5 17.1 37.0 100 101 A S 0 0 90 -4,-0.1 -1,-0.1 0, 0.0 -2,-0.0 -0.963 360.0 360.0-175.6 165.1 42.8 15.7 35.8 101 102 A A 0 0 162 -2,-0.3 -4,-0.1 -4,-0.0 -2,-0.0 -0.730 360.0 360.0 153.6 360.0 46.1 14.1 36.7