==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=31-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 12-JUN-06 2H9Z . COMPND 2 MOLECULE: HYPOTHETICAL PROTEIN HP0495; . SOURCE 2 ORGANISM_SCIENTIFIC: HELICOBACTER PYLORI; . AUTHOR M.D.SEO,S.J.PARK,H.J.KIM,B.J.LEE . 86 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 6712.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 51 59.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 19 22.1 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 11 12.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 6 7.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 13 15.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 1 1 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A M 0 0 176 0, 0.0 2,-1.5 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 -51.4 -33.8 -13.2 -12.7 2 2 A P + 0 0 129 0, 0.0 3,-0.1 0, 0.0 0, 0.0 -0.287 360.0 19.8 -83.2 52.3 -35.5 -16.6 -11.8 3 3 A S S S+ 0 0 127 -2,-1.5 2,-0.3 1,-0.5 0, 0.0 0.082 125.4 26.5-178.3 -47.1 -33.8 -16.7 -8.3 4 4 A D - 0 0 99 1,-0.1 -1,-0.5 3,-0.0 3,-0.1 -0.892 42.1-173.2-133.8 163.7 -32.7 -13.2 -7.3 5 5 A S S S+ 0 0 98 1,-0.4 2,-0.4 -2,-0.3 -1,-0.1 0.677 75.8 22.8-121.2 -51.8 -33.7 -9.6 -7.9 6 6 A K + 0 0 189 2,-0.0 -1,-0.4 0, 0.0 3,-0.0 -0.982 65.9 160.6-127.0 133.9 -31.1 -7.4 -6.2 7 7 A K - 0 0 121 -2,-0.4 -3,-0.0 -3,-0.1 0, 0.0 -0.973 47.6-118.1-147.1 159.1 -27.5 -8.2 -5.3 8 8 A P - 0 0 103 0, 0.0 3,-0.1 0, 0.0 -1,-0.1 0.788 36.6-159.0 -67.8 -28.2 -24.2 -6.5 -4.4 9 9 A T + 0 0 100 1,-0.2 2,-0.7 -3,-0.0 -2,-0.0 0.921 30.0 157.6 45.6 55.9 -22.5 -8.1 -7.5 10 10 A I + 0 0 60 2,-0.0 2,-0.3 55,-0.0 56,-0.2 -0.865 7.3 132.6-115.1 97.6 -19.1 -7.6 -6.0 11 11 A I + 0 0 137 -2,-0.7 54,-0.2 54,-0.1 53,-0.0 -0.769 8.6 141.1-149.5 99.3 -16.5 -10.0 -7.4 12 12 A Y - 0 0 57 52,-0.5 2,-1.4 -2,-0.3 51,-0.0 -0.739 18.1-179.5-142.3 89.5 -13.1 -8.8 -8.7 13 13 A P + 0 0 79 0, 0.0 2,-0.3 0, 0.0 51,-0.2 -0.515 50.9 93.6 -89.9 68.9 -10.2 -11.1 -7.9 14 14 A C S S- 0 0 85 -2,-1.4 49,-1.4 49,-0.2 2,-0.4 -0.862 84.8 -64.5-145.9 178.9 -7.4 -9.1 -9.5 15 15 A L E -A 62 0A 97 -2,-0.3 2,-0.4 47,-0.2 47,-0.2 -0.576 49.8-159.0 -74.6 124.5 -4.8 -6.4 -8.7 16 16 A W E -A 61 0A 94 45,-2.0 45,-1.4 -2,-0.4 2,-0.5 -0.855 4.4-149.7-108.4 141.2 -6.3 -3.1 -7.6 17 17 A D E -A 60 0A 80 -2,-0.4 2,-0.5 43,-0.2 43,-0.2 -0.929 10.8-170.1-112.5 128.3 -4.6 0.3 -7.8 18 18 A Y E -A 59 0A 13 41,-1.4 2,-1.1 -2,-0.5 41,-0.7 -0.969 18.6-140.2-122.3 123.5 -5.5 3.0 -5.3 19 19 A R E +A 58 0A 96 -2,-0.5 67,-0.8 39,-0.2 2,-0.5 -0.683 30.2 176.7 -82.7 99.8 -4.3 6.6 -5.7 20 20 A V E -AB 57 85A 4 37,-2.1 37,-2.1 -2,-1.1 2,-0.4 -0.924 6.8-172.8-111.0 123.0 -3.4 7.7 -2.1 21 21 A I E -AB 56 84A 4 63,-2.9 62,-1.6 -2,-0.5 63,-1.4 -0.893 5.9-156.8-115.3 144.0 -1.9 11.1 -1.5 22 22 A M E -AB 55 82A 3 33,-3.3 33,-3.1 -2,-0.4 2,-0.3 -0.891 10.1-158.3-119.8 150.0 -0.6 12.5 1.8 23 23 A T + 0 0 58 58,-1.1 2,-0.3 -2,-0.3 31,-0.1 -0.591 53.9 101.6-125.9 69.7 -0.1 16.0 3.1 24 24 A T - 0 0 37 -2,-0.3 3,-0.5 1,-0.0 31,-0.1 -0.990 64.4-136.3-149.4 154.3 2.5 15.9 5.8 25 25 A K S S+ 0 0 192 -2,-0.3 56,-0.0 1,-0.2 3,-0.0 -0.025 100.9 59.1-100.0 29.0 6.2 16.6 6.3 26 26 A D > + 0 0 93 2,-0.0 3,-0.9 1,-0.0 -1,-0.2 -0.048 57.3 121.8-145.8 33.9 6.8 13.4 8.3 27 27 A T T >> + 0 0 2 -3,-0.5 4,-2.5 1,-0.2 3,-1.6 0.518 47.7 98.6 -77.0 -5.0 5.8 10.7 5.8 28 28 A S H 3> S+ 0 0 72 1,-0.3 4,-0.8 2,-0.2 -1,-0.2 0.802 79.0 57.3 -52.0 -29.8 9.3 9.2 6.2 29 29 A T H <> S+ 0 0 49 -3,-0.9 4,-0.9 2,-0.2 -1,-0.3 0.808 109.7 43.7 -71.9 -30.1 7.7 6.8 8.7 30 30 A L H <> S+ 0 0 3 -3,-1.6 4,-3.8 2,-0.2 5,-0.4 0.910 107.5 56.2 -80.4 -46.1 5.2 5.6 6.0 31 31 A K H < S+ 0 0 69 -4,-2.5 4,-0.4 1,-0.3 -2,-0.2 0.741 112.3 46.3 -58.2 -22.1 7.7 5.3 3.2 32 32 A E H < S+ 0 0 126 -4,-0.8 -1,-0.3 -5,-0.3 -2,-0.2 0.765 117.4 40.7 -90.3 -30.0 9.7 3.0 5.4 33 33 A L H < S+ 0 0 62 -4,-0.9 3,-0.5 -3,-0.3 4,-0.3 0.780 115.2 50.7 -87.4 -30.7 6.7 0.9 6.6 34 34 A L S >< S+ 0 0 18 -4,-3.8 3,-0.6 1,-0.2 -3,-0.2 0.751 107.1 55.1 -77.3 -25.4 5.1 0.8 3.1 35 35 A E T 3 S+ 0 0 118 -4,-0.4 -1,-0.2 -5,-0.4 -2,-0.2 0.503 81.1 92.2 -84.8 -5.3 8.3 -0.3 1.5 36 36 A T T 3 S- 0 0 72 -3,-0.5 -1,-0.2 1,-0.1 -2,-0.1 0.862 75.5-155.0 -56.2 -36.9 8.5 -3.3 4.0 37 37 A Y < + 0 0 116 -3,-0.6 -2,-0.1 -4,-0.3 -3,-0.1 0.915 30.5 161.2 60.1 45.2 6.7 -5.4 1.4 38 38 A Q + 0 0 163 2,-0.1 -4,-0.0 -4,-0.1 -1,-0.0 0.973 63.8 23.3 -59.4 -57.6 5.3 -7.7 4.1 39 39 A R S S- 0 0 140 1,-0.1 2,-2.7 3,-0.0 0, 0.0 -0.570 112.0 -70.0-106.1 170.7 2.6 -9.2 1.9 40 40 A P S S+ 0 0 104 0, 0.0 22,-1.3 0, 0.0 2,-0.3 -0.310 90.7 120.6 -61.3 74.4 2.2 -9.4 -1.9 41 41 A F E -C 61 0A 24 -2,-2.7 2,-0.3 20,-0.2 20,-0.3 -0.973 39.0-171.3-140.1 154.0 1.7 -5.6 -2.4 42 42 A K E -C 60 0A 106 18,-3.5 18,-3.1 -2,-0.3 2,-0.4 -0.907 11.3-143.8-140.1 166.9 3.4 -2.8 -4.3 43 43 A L - 0 0 19 -2,-0.3 2,-1.0 16,-0.3 16,-0.3 -0.997 10.1-142.2-138.9 132.3 3.3 1.0 -4.6 44 44 A E - 0 0 110 -2,-0.4 14,-1.6 2,-0.0 2,-0.1 -0.786 24.0-141.3 -96.4 98.0 3.8 3.2 -7.6 45 45 A F B -D 57 0A 115 -2,-1.0 12,-0.2 12,-0.2 3,-0.1 -0.355 13.1-166.7 -59.6 128.2 5.7 6.3 -6.4 46 46 A K S S- 0 0 82 10,-1.6 2,-0.3 1,-0.3 -1,-0.2 0.827 71.3 -0.9 -85.3 -35.9 4.4 9.4 -8.1 47 47 A N - 0 0 55 9,-0.7 -1,-0.3 1,-0.1 9,-0.0 -0.989 47.5-154.8-156.0 147.1 7.3 11.6 -7.1 48 48 A T S S- 0 0 112 -2,-0.3 -1,-0.1 -3,-0.1 -2,-0.0 0.855 93.2 -28.3 -89.3 -41.8 10.5 11.4 -5.1 49 49 A S S S+ 0 0 106 3,-0.0 3,-0.1 6,-0.0 6,-0.0 0.082 115.8 91.7-166.5 32.0 10.8 15.0 -4.1 50 50 A K + 0 0 163 1,-0.1 2,-1.8 2,-0.0 -3,-0.1 0.805 65.2 79.6-100.0 -41.7 9.2 17.1 -6.8 51 51 A N - 0 0 60 1,-0.1 2,-1.7 5,-0.1 -1,-0.1 -0.506 58.9-178.1 -71.9 86.3 5.6 17.3 -5.5 52 52 A A S S+ 0 0 98 -2,-1.8 -1,-0.1 1,-0.2 3,-0.1 -0.391 75.3 33.4 -85.0 59.9 6.2 20.2 -3.0 53 53 A K S S+ 0 0 162 -2,-1.7 2,-0.4 -29,-0.1 -1,-0.2 0.112 120.1 25.2-170.3 -54.9 2.7 20.1 -1.7 54 54 A F - 0 0 96 -31,-0.1 2,-0.8 2,-0.0 -31,-0.2 -0.985 67.0-134.9-135.3 124.7 1.1 16.7 -1.7 55 55 A Y E -A 22 0A 77 -33,-3.1 -33,-3.3 -2,-0.4 2,-0.4 -0.671 26.1-161.2 -80.5 109.1 2.9 13.4 -1.5 56 56 A S E +A 21 0A 13 -2,-0.8 -10,-1.6 -35,-0.3 -9,-0.7 -0.775 16.7 165.8 -95.7 133.8 1.3 11.1 -4.1 57 57 A F E -AD 20 45A 7 -37,-2.1 -37,-2.1 -2,-0.4 -12,-0.2 -0.991 22.8-142.3-148.4 136.9 1.7 7.3 -3.9 58 58 A N E -A 19 0A 22 -14,-1.6 2,-0.4 -2,-0.3 -39,-0.2 -0.574 8.0-149.4 -97.1 161.9 0.0 4.4 -5.6 59 59 A V E +A 18 0A 5 -41,-0.7 -41,-1.4 -16,-0.3 2,-0.6 -0.915 13.3 179.7-137.6 110.3 -0.9 1.0 -4.2 60 60 A S E +AC 17 42A 5 -18,-3.1 -18,-3.5 -2,-0.4 2,-0.3 -0.935 21.6 144.6-113.1 115.2 -1.0 -2.2 -6.2 61 61 A M E -AC 16 41A 7 -45,-1.4 -45,-2.0 -2,-0.6 2,-0.3 -0.959 53.7 -82.8-146.1 162.2 -2.0 -5.4 -4.3 62 62 A E E -A 15 0A 112 -22,-1.3 2,-0.4 -2,-0.3 -47,-0.2 -0.510 46.7-173.0 -70.0 125.4 -3.9 -8.6 -4.8 63 63 A V + 0 0 0 -49,-1.4 -49,-0.2 -2,-0.3 3,-0.1 -0.951 22.7 176.1-123.6 141.5 -7.6 -8.2 -4.3 64 64 A S - 0 0 45 1,-0.4 -52,-0.5 -2,-0.4 2,-0.3 0.664 66.9 -40.2-111.5 -29.8 -10.3 -10.9 -4.1 65 65 A N S >> S- 0 0 55 -54,-0.2 4,-2.1 -51,-0.1 3,-0.8 -0.970 79.6 -56.9-177.4-175.0 -13.4 -8.8 -3.2 66 66 A E H 3> S+ 0 0 96 -2,-0.3 4,-2.2 1,-0.2 5,-0.2 0.822 121.8 70.7 -52.3 -32.8 -14.8 -5.9 -1.2 67 67 A S H 3> S+ 0 0 72 2,-0.2 4,-1.0 1,-0.2 -1,-0.2 0.941 107.9 32.7 -49.9 -54.5 -13.5 -7.8 1.9 68 68 A E H X> S+ 0 0 70 -3,-0.8 4,-3.8 2,-0.2 3,-1.5 0.962 112.9 60.4 -68.0 -52.6 -9.9 -7.1 1.0 69 69 A R H 3X S+ 0 0 77 -4,-2.1 4,-0.9 1,-0.3 -1,-0.2 0.785 107.4 49.3 -45.3 -30.4 -10.6 -3.7 -0.6 70 70 A N H 3X S+ 0 0 78 -4,-2.2 4,-0.9 -5,-0.2 -1,-0.3 0.797 115.5 41.6 -80.7 -30.4 -12.0 -2.8 2.9 71 71 A E H < S+ 0 0 100 -4,-1.7 3,-1.0 2,-0.2 4,-0.3 0.880 110.9 45.1 -75.6 -40.1 -4.3 -0.6 6.1 76 76 A I H 3< S+ 0 0 15 -4,-1.6 3,-0.3 1,-0.2 6,-0.2 0.822 117.9 44.5 -72.8 -31.5 -2.9 2.0 3.7 77 77 A S T 3< S+ 0 0 48 -4,-1.1 -1,-0.2 1,-0.2 -2,-0.2 0.015 81.0 112.8-100.5 26.2 -4.6 4.8 5.7 78 78 A Q < + 0 0 135 -3,-1.0 -1,-0.2 2,-0.1 -2,-0.1 0.957 65.8 63.8 -61.7 -52.9 -3.5 3.4 9.0 79 79 A L S S- 0 0 59 -3,-0.3 -3,-0.0 -4,-0.3 0, 0.0 0.139 90.2-117.6 -60.3-175.6 -1.2 6.3 9.8 80 80 A D S S+ 0 0 154 1,-0.1 -1,-0.1 0, 0.0 -3,-0.1 -0.076 94.5 79.2-119.1 31.4 -2.4 9.9 10.3 81 81 A K + 0 0 31 -57,-0.1 -58,-1.1 -54,-0.1 -54,-0.1 0.849 65.8 87.8-101.1 -56.5 -0.5 11.5 7.4 82 82 A V E +B 22 0A 21 -60,-0.2 -60,-0.3 -6,-0.2 3,-0.1 -0.121 41.8 166.0 -47.4 137.7 -2.6 10.6 4.3 83 83 A V E + 0 0 97 -62,-1.6 2,-0.5 1,-0.3 -61,-0.2 0.649 59.2 50.3-123.2 -44.7 -5.3 13.2 3.6 84 84 A Q E +B 21 0A 104 -63,-1.4 -63,-2.9 0, 0.0 2,-0.3 -0.877 64.0 174.7-105.8 131.6 -6.5 12.6 0.1 85 85 A T E B 20 0A 56 -2,-0.5 -65,-0.2 -65,-0.2 -63,-0.0 -0.957 360.0 360.0-134.7 152.8 -7.5 9.1 -1.1 86 86 A L 0 0 132 -67,-0.8 -66,-0.1 -2,-0.3 -1,-0.1 0.493 360.0 360.0-129.8 360.0 -9.1 7.6 -4.3