==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=11-MAR-2010 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER MEMBRANE PROTEIN 01-MAY-09 3HAK . COMPND 2 MOLECULE: MAJOR PRION PROTEIN; . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR S.LEE,L.ANTONY,R.HARTMANN,K.J.KNAUS,K.SUREWICZ,W.K.SUREWICZ, . 103 1 1 1 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 6823.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 67 65.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 3 2.9 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 1 1.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 9 8.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 52 50.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 1 1.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 125 A L 0 0 190 0, 0.0 41,-0.4 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 -38.4 16.0 1.0 10.6 2 126 A G + 0 0 34 39,-0.1 41,-0.0 40,-0.1 38,-0.0 0.254 360.0 114.4 -99.0 13.3 17.4 4.4 11.6 3 127 A G - 0 0 42 1,-0.1 39,-0.4 37,-0.1 2,-0.3 -0.149 65.9-107.2 -82.2 173.5 14.4 6.4 10.2 4 128 A Y - 0 0 77 36,-0.2 2,-0.3 37,-0.1 36,-0.2 -0.733 30.6-175.0 -97.4 152.0 11.7 8.5 11.8 5 129 A V E -A 39 0A 68 34,-2.5 34,-2.5 -2,-0.3 2,-0.4 -0.893 28.5-103.6-134.3 165.9 8.1 7.6 12.2 6 130 A L E -A 38 0A 77 -2,-0.3 32,-0.2 32,-0.2 3,-0.1 -0.771 28.8-145.2 -91.2 138.1 5.0 9.4 13.5 7 131 A G - 0 0 6 30,-2.8 3,-0.1 -2,-0.4 -1,-0.0 -0.273 43.1 -63.0 -85.2-178.2 3.5 8.7 16.9 8 132 A S - 0 0 67 1,-0.1 29,-0.4 28,-0.1 -1,-0.2 -0.319 59.3 -98.0 -68.4 150.0 -0.1 8.8 17.8 9 133 A A - 0 0 60 27,-0.1 2,-0.3 -3,-0.1 27,-0.2 -0.447 43.4-149.7 -65.2 139.3 -2.0 12.1 17.5 10 134 A M - 0 0 17 25,-3.7 2,-0.1 -2,-0.1 -1,-0.0 -0.824 12.2-118.1-113.5 146.7 -2.3 13.8 20.9 11 135 A S - 0 0 110 -2,-0.3 -1,-0.0 1,-0.1 0, 0.0 -0.487 57.8 -74.4 -72.9 159.2 -5.0 16.1 22.3 12 136 A R - 0 0 87 -2,-0.1 -1,-0.1 1,-0.1 2,-0.1 -0.305 53.7-143.0 -57.3 115.1 -3.8 19.6 23.2 13 137 A P - 0 0 44 0, 0.0 2,-0.5 0, 0.0 -1,-0.1 -0.473 21.9-102.8 -79.9 160.7 -1.7 19.4 26.3 14 138 A I - 0 0 145 -2,-0.1 2,-0.4 2,-0.0 0, 0.0 -0.710 44.5-177.6 -76.6 123.3 -1.8 22.1 28.9 15 139 A I - 0 0 18 -2,-0.5 2,-0.4 8,-0.1 70,-0.1 -0.993 10.3-155.7-130.1 121.1 1.4 24.1 28.4 16 140 A H - 0 0 134 -2,-0.4 2,-0.2 68,-0.1 -2,-0.0 -0.827 8.5-167.2 -99.2 136.8 2.2 27.0 30.8 17 141 A F - 0 0 22 -2,-0.4 6,-0.1 2,-0.2 64,-0.0 -0.599 35.3-102.1-110.7 178.1 4.5 30.0 29.8 18 142 A G S S+ 0 0 80 -2,-0.2 2,-0.3 4,-0.0 3,-0.1 0.626 95.1 39.1 -76.0 -14.1 6.2 32.7 31.9 19 143 A S S > S- 0 0 40 1,-0.1 4,-2.4 0, 0.0 -2,-0.2 -0.953 72.2-122.8-141.4 156.8 3.7 35.5 31.0 20 144 A D H > S+ 0 0 143 -2,-0.3 4,-2.5 1,-0.2 5,-0.2 0.909 114.9 56.2 -56.0 -47.6 0.1 36.4 30.4 21 145 A Y H > S+ 0 0 144 1,-0.2 4,-2.4 2,-0.2 -1,-0.2 0.919 109.5 44.8 -54.5 -45.9 1.1 37.7 27.0 22 146 A E H > S+ 0 0 61 2,-0.2 4,-3.0 1,-0.2 -1,-0.2 0.904 111.1 52.2 -67.0 -43.1 2.6 34.4 26.1 23 147 A D H X S+ 0 0 46 -4,-2.4 4,-2.5 2,-0.2 -1,-0.2 0.906 112.4 46.5 -59.3 -40.2 -0.2 32.3 27.4 24 148 A R H X S+ 0 0 146 -4,-2.5 4,-2.0 2,-0.2 -2,-0.2 0.931 113.1 47.9 -69.5 -46.3 -2.7 34.3 25.4 25 149 A Y H X S+ 0 0 43 -4,-2.4 4,-1.4 -5,-0.2 5,-0.2 0.939 112.9 50.2 -55.9 -47.4 -0.6 34.2 22.2 26 150 A Y H >X S+ 0 0 10 -4,-3.0 4,-2.3 1,-0.2 3,-0.6 0.928 108.9 50.3 -57.7 -49.0 -0.2 30.4 22.7 27 151 A R H 3< S+ 0 0 149 -4,-2.5 4,-0.3 1,-0.2 -1,-0.2 0.879 114.5 45.1 -58.6 -37.7 -3.9 29.8 23.2 28 152 A E H 3< S+ 0 0 93 -4,-2.0 -1,-0.2 1,-0.2 -2,-0.2 0.664 123.6 33.1 -82.8 -16.6 -4.7 31.8 20.0 29 153 A N H X< S+ 0 0 24 -4,-1.4 3,-2.9 -3,-0.6 4,-0.2 0.553 85.4 96.4-114.3 -11.1 -2.0 30.2 17.8 30 154 A M G >< S+ 0 0 53 -4,-2.3 3,-2.2 1,-0.3 -3,-0.1 0.773 73.4 71.7 -60.8 -24.0 -1.7 26.6 19.1 31 155 A H G 3 S+ 0 0 136 -4,-0.3 -1,-0.3 1,-0.3 -2,-0.1 0.748 94.3 56.4 -59.4 -21.9 -4.1 25.4 16.3 32 156 A R G < S+ 0 0 52 -3,-2.9 -1,-0.3 2,-0.1 -2,-0.2 0.512 95.3 84.6 -88.0 -3.9 -1.2 26.1 14.0 33 157 A Y S < S- 0 0 5 -3,-2.2 27,-0.0 -4,-0.2 45,-0.0 -0.499 88.5 -84.0-100.2 165.0 1.3 23.8 15.8 34 158 A P - 0 0 9 0, 0.0 -1,-0.1 0, 0.0 3,-0.1 -0.245 28.0-175.1 -65.4 152.2 1.8 20.0 15.6 35 159 A N S S+ 0 0 68 1,-0.2 -25,-3.7 -23,-0.1 2,-0.3 0.191 75.4 51.9-127.2 16.9 -0.3 17.4 17.5 36 160 A Q S S- 0 0 74 -27,-0.2 2,-0.3 23,-0.1 -1,-0.2 -0.981 77.2-144.4-147.5 137.6 1.6 14.4 16.4 37 161 A V - 0 0 0 -29,-0.4 -30,-2.8 -2,-0.3 2,-0.4 -0.817 7.8-133.2-116.1 150.0 5.4 14.0 16.7 38 162 A Y E +A 6 0A 68 17,-0.4 21,-0.3 -2,-0.3 2,-0.3 -0.793 34.5 172.0 -92.4 137.4 8.1 12.3 14.6 39 163 A Y E -A 5 0A 25 -34,-2.5 -34,-2.5 -2,-0.4 3,-0.1 -0.949 32.7-120.6-145.5 165.4 10.6 10.2 16.6 40 164 A R > - 0 0 70 -2,-0.3 3,-1.9 -36,-0.2 4,-0.4 -0.911 9.6-156.8-113.8 105.8 13.4 7.8 15.9 41 165 A P G > S+ 0 0 47 0, 0.0 3,-2.0 0, 0.0 4,-0.2 0.877 95.6 60.5 -51.0 -36.0 12.9 4.2 17.2 42 166 A M G > S+ 0 0 60 -39,-0.4 3,-1.8 -41,-0.4 -40,-0.1 0.748 89.2 70.8 -64.6 -23.3 16.7 3.7 17.2 43 167 A D G X S+ 0 0 1 -3,-1.9 3,-1.7 1,-0.3 8,-0.3 0.674 80.9 74.4 -65.5 -14.8 17.0 6.6 19.6 44 168 A E G < S+ 0 0 62 -3,-2.0 -1,-0.3 -4,-0.4 -2,-0.2 0.690 91.1 57.0 -69.6 -15.7 15.5 4.2 22.2 45 169 A Y G < S+ 0 0 198 -3,-1.8 -1,-0.3 -4,-0.2 -2,-0.2 0.369 109.3 55.7 -89.3 4.4 18.9 2.7 22.1 46 170 A S S < S- 0 0 45 -3,-1.7 2,-0.1 1,-0.2 -3,-0.0 -0.499 105.0 -65.4-117.5-168.8 20.4 6.1 23.1 47 171 A N > - 0 0 101 -2,-0.2 4,-2.0 1,-0.1 3,-0.3 -0.384 41.8-111.6 -84.5 164.4 19.6 8.4 26.0 48 172 A Q H > S+ 0 0 76 1,-0.2 4,-2.4 2,-0.2 5,-0.2 0.841 115.1 57.6 -57.3 -40.3 16.2 10.1 26.7 49 173 A N H > S+ 0 0 93 1,-0.2 4,-2.6 2,-0.2 -1,-0.2 0.907 108.1 46.6 -62.3 -40.3 17.7 13.6 26.1 50 174 A N H > S+ 0 0 61 -3,-0.3 4,-2.9 2,-0.2 5,-0.3 0.917 110.6 50.9 -65.5 -48.0 18.7 12.6 22.6 51 175 A F H X S+ 0 0 1 -4,-2.0 4,-2.1 -8,-0.3 -11,-0.2 0.923 114.7 45.8 -53.4 -47.0 15.4 10.9 21.7 52 176 A V H X S+ 0 0 1 -4,-2.4 4,-3.0 2,-0.2 -2,-0.2 0.936 113.5 45.8 -68.2 -47.7 13.6 14.1 22.8 53 177 A H H X S+ 0 0 68 -4,-2.6 4,-2.7 -5,-0.2 5,-0.2 0.922 112.9 50.2 -71.2 -32.1 15.8 16.6 21.1 54 178 A D H X S+ 0 0 38 -4,-2.9 4,-2.7 2,-0.2 5,-0.3 0.918 112.3 49.3 -61.4 -42.1 15.8 14.6 17.8 55 179 A a H X S+ 0 0 0 -4,-2.1 4,-2.2 -5,-0.3 -17,-0.4 0.916 112.6 47.3 -64.5 -42.1 12.0 14.4 18.1 56 180 A V H X S+ 0 0 7 -4,-3.0 4,-2.4 2,-0.2 5,-0.3 0.953 114.3 46.4 -64.8 -47.5 11.7 18.2 18.7 57 181 A N H X S+ 0 0 80 -4,-2.7 4,-2.4 -5,-0.2 5,-0.2 0.944 118.0 39.6 -62.2 -49.3 14.1 19.1 15.9 58 182 A I H X S+ 0 0 49 -4,-2.7 4,-2.9 -5,-0.2 5,-0.3 0.900 114.7 53.0 -70.9 -38.5 12.6 16.9 13.2 59 183 A T H X S+ 0 0 2 -4,-2.2 4,-2.2 -21,-0.3 -1,-0.2 0.948 113.9 41.4 -61.5 -47.0 9.0 17.5 14.2 60 184 A I H X S+ 0 0 15 -4,-2.4 4,-2.1 -5,-0.3 -2,-0.2 0.925 116.2 49.0 -72.6 -38.3 9.4 21.3 14.1 61 185 A K H X S+ 0 0 138 -4,-2.4 4,-2.6 -5,-0.3 -2,-0.2 0.950 113.6 45.9 -65.0 -44.9 11.4 21.2 10.9 62 186 A Q H X S+ 0 0 76 -4,-2.9 4,-2.5 1,-0.2 -1,-0.2 0.909 112.9 50.7 -64.4 -39.2 8.9 18.9 9.1 63 187 A H H X S+ 0 0 41 -4,-2.2 4,-2.2 -5,-0.3 -1,-0.2 0.863 109.3 51.4 -68.2 -32.4 6.0 21.0 10.3 64 188 A T H X S+ 0 0 46 -4,-2.1 4,-3.0 2,-0.2 5,-0.2 0.927 109.3 49.7 -65.2 -46.8 7.8 24.1 9.0 65 189 A V H X S+ 0 0 89 -4,-2.6 4,-1.4 1,-0.2 -2,-0.2 0.917 113.9 46.1 -56.4 -47.1 8.2 22.4 5.6 66 190 A T H < S+ 0 0 83 -4,-2.5 4,-0.5 2,-0.2 -2,-0.2 0.874 114.0 48.6 -61.2 -37.2 4.5 21.5 5.6 67 191 A T H ><>S+ 0 0 4 -4,-2.2 5,-1.7 1,-0.2 3,-1.3 0.898 105.5 56.6 -75.2 -40.9 3.5 25.0 6.7 68 192 A T H ><5S+ 0 0 80 -4,-3.0 3,-2.3 1,-0.3 -1,-0.2 0.877 98.9 61.7 -54.1 -41.1 5.6 26.7 4.1 69 193 A T T 3<5S+ 0 0 115 -4,-1.4 -1,-0.3 1,-0.3 -2,-0.2 0.756 99.3 55.8 -61.7 -20.7 3.8 24.7 1.4 70 194 A K T < 5S- 0 0 138 -3,-1.3 -1,-0.3 -4,-0.5 -2,-0.2 0.202 125.2-103.1 -93.8 13.8 0.6 26.5 2.5 71 195 A G T < 5S+ 0 0 74 -3,-2.3 2,-0.2 1,-0.2 -3,-0.2 0.649 82.3 127.1 76.1 18.7 2.2 29.9 2.0 72 196 A E < - 0 0 86 -5,-1.7 2,-0.3 -8,-0.1 -1,-0.2 -0.676 43.4-154.9-116.4 166.6 2.7 30.4 5.7 73 197 A N - 0 0 131 -2,-0.2 2,-0.5 -3,-0.1 -9,-0.0 -0.955 11.5-137.4-139.2 144.3 5.6 31.3 7.9 74 198 A F - 0 0 23 -2,-0.3 2,-0.1 4,-0.0 -6,-0.0 -0.934 21.7-143.7-106.0 134.5 6.5 30.8 11.6 75 199 A T > - 0 0 70 -2,-0.5 4,-2.3 1,-0.1 5,-0.2 -0.305 33.0 -98.0 -80.7 171.6 8.0 33.6 13.5 76 200 A E H > S+ 0 0 155 1,-0.2 4,-2.4 2,-0.2 5,-0.2 0.885 127.9 54.5 -56.7 -36.7 10.7 33.3 16.2 77 201 A T H > S+ 0 0 45 1,-0.2 4,-2.4 2,-0.2 -1,-0.2 0.935 106.7 49.6 -64.9 -43.4 7.8 33.5 18.7 78 202 A D H > S+ 0 0 1 2,-0.2 4,-2.7 1,-0.2 -1,-0.2 0.889 110.8 49.9 -61.2 -41.1 6.0 30.6 17.1 79 203 A V H X S+ 0 0 47 -4,-2.3 4,-3.0 2,-0.2 -1,-0.2 0.933 110.3 49.4 -67.1 -42.3 9.2 28.5 17.1 80 204 A K H X S+ 0 0 113 -4,-2.4 4,-1.6 2,-0.2 -1,-0.2 0.903 112.9 48.4 -59.1 -44.2 9.8 29.2 20.8 81 205 A M H X S+ 0 0 2 -4,-2.4 4,-2.1 2,-0.2 5,-0.2 0.928 112.5 47.6 -60.5 -45.3 6.2 28.2 21.4 82 206 A M H X S+ 0 0 0 -4,-2.7 4,-3.2 1,-0.2 5,-0.5 0.893 105.7 58.9 -65.8 -37.9 6.5 25.0 19.4 83 207 A E H X S+ 0 0 97 -4,-3.0 4,-1.9 1,-0.2 -1,-0.2 0.918 108.6 46.4 -57.1 -41.8 9.8 24.1 21.1 84 208 A R H X S+ 0 0 98 -4,-1.6 4,-1.7 2,-0.2 -2,-0.2 0.968 119.7 35.8 -64.8 -55.0 7.9 24.1 24.5 85 209 A V H X S+ 0 0 0 -4,-2.1 4,-2.7 2,-0.2 5,-0.2 0.908 118.0 50.9 -69.8 -41.7 4.8 22.1 23.4 86 210 A V H X S+ 0 0 0 -4,-3.2 4,-2.9 1,-0.2 5,-0.2 0.903 107.1 55.6 -65.4 -36.3 6.7 19.7 21.1 87 211 A E H X S+ 0 0 63 -4,-1.9 4,-1.9 -5,-0.5 -1,-0.2 0.946 110.2 45.1 -60.1 -44.8 9.2 19.0 23.8 88 212 A Q H X S+ 0 0 77 -4,-1.7 4,-2.4 2,-0.2 -2,-0.2 0.938 113.1 50.0 -65.6 -41.6 6.4 18.0 26.1 89 213 A M H X S+ 0 0 2 -4,-2.7 4,-2.4 1,-0.2 -2,-0.2 0.903 110.1 51.6 -62.6 -36.4 4.7 15.9 23.4 90 214 A a H X S+ 0 0 0 -4,-2.9 4,-2.4 2,-0.2 -1,-0.2 0.853 109.4 49.1 -66.7 -35.5 8.1 14.2 22.7 91 215 A I H X S+ 0 0 28 -4,-1.9 4,-3.0 -5,-0.2 5,-0.2 0.914 110.8 50.9 -68.8 -40.3 8.6 13.3 26.3 92 216 A T H X S+ 0 0 45 -4,-2.4 4,-2.4 1,-0.2 -2,-0.2 0.925 110.0 50.2 -60.5 -44.7 5.0 11.9 26.4 93 217 A Q H X S+ 0 0 8 -4,-2.4 4,-2.7 2,-0.2 -1,-0.2 0.925 111.3 48.2 -59.0 -46.2 5.9 9.9 23.3 94 218 A Y H X S+ 0 0 57 -4,-2.4 4,-3.0 2,-0.2 -2,-0.2 0.934 111.2 50.1 -58.8 -46.4 9.1 8.6 25.0 95 219 A E H X S+ 0 0 104 -4,-3.0 4,-2.7 1,-0.2 -1,-0.2 0.869 110.7 49.5 -66.0 -34.7 7.2 7.7 28.1 96 220 A R H X S+ 0 0 116 -4,-2.4 4,-2.3 -5,-0.2 -1,-0.2 0.917 111.3 49.1 -67.5 -43.3 4.6 5.8 26.1 97 221 A E H X S+ 0 0 46 -4,-2.7 4,-2.3 2,-0.2 -2,-0.2 0.909 113.3 47.9 -55.5 -46.1 7.4 4.0 24.2 98 222 A S H X S+ 0 0 41 -4,-3.0 4,-2.1 2,-0.2 5,-0.2 0.946 109.8 51.4 -63.7 -47.5 9.0 3.1 27.6 99 223 A Q H X S+ 0 0 123 -4,-2.7 4,-0.8 1,-0.2 -1,-0.2 0.909 113.1 45.6 -56.4 -43.5 5.7 2.0 29.1 100 224 A A H < S+ 0 0 56 -4,-2.3 3,-0.4 1,-0.2 -1,-0.2 0.884 111.0 53.5 -64.6 -41.2 5.1 -0.3 26.1 101 225 A Y H < S+ 0 0 170 -4,-2.3 -1,-0.2 1,-0.2 -2,-0.2 0.845 117.5 35.3 -66.4 -35.6 8.6 -1.7 26.2 102 226 A Y H < 0 0 177 -4,-2.1 -1,-0.2 -5,-0.1 -2,-0.2 0.510 360.0 360.0 -96.8 -5.6 8.5 -2.7 29.9 103 227 A Q < 0 0 216 -4,-0.8 -3,-0.0 -3,-0.4 -4,-0.0 -0.557 360.0 360.0 -91.4 360.0 4.8 -3.8 29.9