==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=20-JUL-2011 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER RNA BINDING PROTEIN 14-JUN-06 2HBA . COMPND 2 MOLECULE: 50S RIBOSOMAL PROTEIN L9; . SOURCE 2 ORGANISM_SCIENTIFIC: GEOBACILLUS STEAROTHERMOPHILUS; . AUTHOR J.-H.CHO,E.Y.KIM,H.SCHINDELIN,D.P.RALEIGH . 104 2 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 6455.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 72 69.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 20 19.2 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 2 1.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 6 5.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 6 5.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 30 28.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 6 5.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 2 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 2 0 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A M 0 0 47 0, 0.0 20,-2.8 0, 0.0 2,-0.5 0.000 360.0 360.0 360.0 124.0 -9.1 -27.5 -20.6 2 2 A K E -A 20 0A 98 18,-0.2 37,-2.7 16,-0.1 2,-0.3 -0.824 360.0-179.4 -90.6 124.6 -6.5 -25.8 -18.4 3 3 A V E -AB 19 38A 0 16,-2.8 16,-2.2 -2,-0.5 2,-0.4 -0.890 26.5-145.8-124.4 154.8 -7.6 -25.8 -14.7 4 4 A I E -AB 18 37A 22 33,-2.7 33,-2.0 -2,-0.3 2,-0.3 -0.981 31.1-123.4-114.6 129.5 -6.3 -24.6 -11.4 5 5 A F E - B 0 36A 3 12,-2.2 11,-2.7 -2,-0.4 31,-0.3 -0.560 24.5-177.0 -78.1 134.5 -7.2 -26.8 -8.4 6 6 A L S S+ 0 0 42 29,-2.4 2,-0.3 -2,-0.3 30,-0.2 0.582 78.3 25.2 -98.6 -19.9 -9.1 -25.2 -5.4 7 7 A K S S- 0 0 124 28,-1.5 2,-0.4 7,-0.1 -1,-0.2 -0.930 95.8 -91.8-137.5 161.8 -9.0 -28.5 -3.4 8 8 A D - 0 0 109 -2,-0.3 2,-0.5 6,-0.1 6,-0.3 -0.629 33.8-171.2 -76.7 131.9 -6.7 -31.5 -3.4 9 9 A V B >> -C 13 0B 24 4,-3.4 4,-2.2 -2,-0.4 3,-2.1 -0.918 24.9-130.7-122.8 101.5 -7.8 -34.3 -5.7 10 10 A K T 34 S+ 0 0 205 -2,-0.5 4,-0.0 1,-0.3 -2,-0.0 -0.216 91.6 15.9 -52.3 134.8 -5.6 -37.3 -5.1 11 11 A G T 34 S+ 0 0 82 1,-0.1 -1,-0.3 0, 0.0 3,-0.1 0.532 130.5 52.7 79.9 4.6 -4.2 -38.8 -8.3 12 12 A M T <4 S- 0 0 44 -3,-2.1 2,-0.3 1,-0.2 -2,-0.2 0.521 111.6 -38.9-136.6 -62.0 -5.1 -35.6 -10.2 13 13 A G B < -C 9 0B 5 -4,-2.2 -4,-3.4 -6,-0.0 2,-0.2 -0.966 42.3-121.4-172.8 156.8 -3.8 -32.4 -8.7 14 14 A K > - 0 0 140 -2,-0.3 3,-2.5 -6,-0.3 -9,-0.4 -0.646 53.8 -73.1 -99.4 156.1 -3.1 -30.5 -5.5 15 15 A K T 3 S+ 0 0 146 1,-0.3 -9,-0.2 -2,-0.2 -1,-0.1 -0.219 121.4 19.5 -48.4 129.7 -4.5 -27.1 -4.5 16 16 A G T 3 S+ 0 0 46 -11,-2.7 -1,-0.3 1,-0.3 2,-0.1 0.244 93.6 125.4 90.7 -15.1 -2.8 -24.4 -6.6 17 17 A E < - 0 0 90 -3,-2.5 -12,-2.2 -12,-0.1 2,-0.5 -0.452 51.0-143.5 -77.1 153.1 -1.5 -26.7 -9.3 18 18 A I E +A 4 0A 82 -14,-0.2 2,-0.3 -2,-0.1 -14,-0.2 -0.987 28.3 163.6-121.3 125.7 -2.4 -26.0 -12.9 19 19 A K E -A 3 0A 84 -16,-2.2 -16,-2.8 -2,-0.5 2,-0.5 -0.990 36.4-122.8-144.4 147.0 -3.1 -28.9 -15.3 20 20 A N E +A 2 0A 118 -2,-0.3 2,-0.3 -18,-0.2 -18,-0.2 -0.817 40.6 169.0 -90.6 129.0 -4.7 -29.7 -18.6 21 21 A V - 0 0 20 -20,-2.8 5,-0.0 -2,-0.5 -2,-0.0 -0.886 42.0 -72.6-135.2 165.7 -7.5 -32.2 -18.5 22 22 A A > - 0 0 70 -2,-0.3 4,-2.2 1,-0.1 3,-0.2 -0.315 41.4-128.4 -57.1 140.7 -10.3 -33.5 -20.7 23 23 A D H > S+ 0 0 92 1,-0.2 4,-3.0 2,-0.2 5,-0.3 0.879 106.4 55.1 -63.0 -40.8 -13.1 -31.0 -21.2 24 24 A G H > S+ 0 0 40 1,-0.2 4,-2.5 2,-0.2 5,-0.3 0.901 108.9 47.8 -59.5 -42.7 -15.8 -33.5 -20.1 25 25 A Y H >>S+ 0 0 70 -3,-0.2 5,-2.2 2,-0.2 4,-1.8 0.917 113.8 46.9 -63.8 -46.7 -14.0 -34.2 -16.8 26 26 A A H <>S+ 0 0 0 -4,-2.2 5,-3.0 3,-0.2 6,-0.5 0.965 119.2 39.6 -57.9 -50.2 -13.6 -30.5 -16.1 27 27 A N H <5S+ 0 0 51 -4,-3.0 5,-0.2 1,-0.2 -2,-0.2 0.881 125.4 33.9 -71.2 -37.8 -17.1 -29.6 -17.0 28 28 A N H <5S+ 0 0 110 -4,-2.5 -1,-0.2 -5,-0.3 -3,-0.2 0.635 135.0 12.3 -97.8 -16.3 -18.9 -32.6 -15.4 29 29 A F T X5S+ 0 0 88 -4,-1.8 4,-2.1 -5,-0.3 6,-0.3 0.654 123.9 41.6-125.7 -63.8 -16.8 -33.3 -12.4 30 30 A L T 4XS+ 0 0 0 -5,-2.2 5,-2.4 1,-0.2 6,-0.9 0.940 124.2 34.0 -62.8 -50.2 -14.2 -30.7 -11.4 31 31 A F T >4 - 0 0 37 -2,-1.1 4,-2.6 1,-0.1 5,-0.3 -0.421 59.6-111.5 -74.6 156.2 -7.7 -18.4 -17.7 41 41 A P H > S+ 0 0 108 0, 0.0 4,-2.3 0, 0.0 5,-0.2 0.917 119.3 52.1 -55.5 -40.1 -5.5 -15.4 -17.4 42 42 A A H > S+ 0 0 14 1,-0.2 4,-2.1 2,-0.2 5,-0.2 0.909 110.2 46.2 -62.0 -44.2 -8.4 -13.5 -16.0 43 43 A N H > S+ 0 0 2 2,-0.2 4,-2.8 1,-0.2 -1,-0.2 0.895 112.7 50.6 -67.1 -39.8 -9.3 -16.0 -13.4 44 44 A L H X S+ 0 0 33 -4,-2.6 4,-2.4 2,-0.2 -2,-0.2 0.914 109.2 51.1 -63.3 -39.4 -5.7 -16.3 -12.3 45 45 A K H X S+ 0 0 74 -4,-2.3 4,-2.0 -5,-0.3 -2,-0.2 0.938 113.0 46.6 -61.6 -42.9 -5.4 -12.5 -12.0 46 46 A A H X S+ 0 0 0 -4,-2.1 4,-1.8 1,-0.2 -2,-0.2 0.924 111.8 49.8 -69.4 -41.1 -8.5 -12.5 -9.8 47 47 A L H X S+ 0 0 30 -4,-2.8 4,-2.1 1,-0.2 -1,-0.2 0.922 110.3 50.6 -61.8 -42.9 -7.4 -15.4 -7.6 48 48 A E H X S+ 0 0 117 -4,-2.4 4,-1.9 1,-0.2 -1,-0.2 0.903 108.1 53.4 -60.3 -41.9 -4.0 -13.7 -7.0 49 49 A A H < S+ 0 0 23 -4,-2.0 -1,-0.2 35,-0.2 -2,-0.2 0.901 109.0 48.1 -63.3 -40.3 -5.7 -10.5 -6.0 50 50 A Q H < S+ 0 0 89 -4,-1.8 -1,-0.2 1,-0.2 -2,-0.2 0.920 109.6 51.9 -70.4 -40.0 -7.9 -12.2 -3.4 51 51 A K H < 0 0 147 -4,-2.1 -1,-0.2 1,-0.2 -2,-0.2 0.866 360.0 360.0 -62.7 -37.0 -5.0 -14.1 -1.8 52 52 A Q < 0 0 194 -4,-1.9 -2,-0.2 -5,-0.2 -1,-0.2 0.971 360.0 360.0 -73.7 360.0 -3.0 -10.9 -1.5 53 !* 0 0 0 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 360.0 0.0 0.0 0.0 54 1 B M 0 0 54 0, 0.0 20,-3.2 0, 0.0 2,-0.5 0.000 360.0 360.0 360.0 125.8 -17.7 -8.7 -21.1 55 2 B K E -D 73 0C 102 18,-0.3 37,-2.7 16,-0.1 2,-0.3 -0.772 360.0-178.0 -85.9 124.6 -20.3 -10.6 -18.9 56 3 B V E -DE 72 91C 0 16,-2.7 16,-2.0 -2,-0.5 2,-0.4 -0.900 25.3-145.7-126.2 152.9 -19.0 -10.6 -15.3 57 4 B I E -DE 71 90C 20 33,-2.8 33,-1.9 -2,-0.3 2,-0.3 -0.981 27.5-125.4-116.0 127.4 -20.0 -12.0 -12.0 58 5 B F E - E 0 89C 2 12,-2.5 11,-2.8 -2,-0.4 31,-0.3 -0.564 22.0-175.6 -75.5 134.6 -19.2 -10.1 -8.9 59 6 B L S S+ 0 0 31 29,-2.8 2,-0.3 -2,-0.3 30,-0.2 0.512 73.3 28.0 -99.1 -13.0 -17.2 -11.7 -6.0 60 7 B K S S- 0 0 113 28,-1.1 2,-0.4 7,-0.1 -1,-0.1 -0.963 84.2-102.7-143.3 157.5 -17.4 -8.7 -3.7 61 8 B D + 0 0 106 -2,-0.3 2,-0.3 6,-0.2 6,-0.3 -0.677 40.0 176.6 -78.7 135.0 -19.6 -5.7 -3.0 62 9 B V B >> -F 66 0D 36 4,-2.8 3,-2.3 -2,-0.4 4,-2.0 -0.962 37.3-103.4-145.5 127.1 -18.1 -2.5 -4.4 63 10 B K T 34 S- 0 0 205 -2,-0.3 4,-0.1 1,-0.3 -2,-0.0 -0.191 101.2 -3.4 -58.7 127.0 -19.9 0.8 -4.1 64 11 B G T 34 S+ 0 0 85 1,-0.1 -1,-0.3 2,-0.0 3,-0.1 0.553 128.6 69.2 70.7 9.1 -21.5 1.8 -7.4 65 12 B M T <4 S- 0 0 41 -3,-2.3 2,-0.3 1,-0.4 -2,-0.2 0.717 102.0 -52.1-122.3 -58.0 -20.2 -1.2 -9.2 66 13 B G B < -F 62 0D 7 -4,-2.0 -4,-2.8 -9,-0.0 -1,-0.4 -0.985 34.5-119.0-175.0 171.5 -21.8 -4.4 -8.0 67 14 B K > - 0 0 124 -2,-0.3 3,-2.5 -6,-0.3 -9,-0.3 -0.938 53.8 -76.3-125.8 151.0 -22.8 -6.7 -5.2 68 15 B K T 3 S+ 0 0 134 -2,-0.3 -9,-0.2 1,-0.3 3,-0.1 -0.167 118.7 16.4 -47.7 128.1 -21.7 -10.3 -4.7 69 16 B G T 3 S+ 0 0 42 -11,-2.8 -1,-0.3 1,-0.3 2,-0.1 0.262 91.7 131.0 89.3 -12.5 -23.5 -12.6 -7.1 70 17 B E < - 0 0 70 -3,-2.5 -12,-2.5 -12,-0.1 2,-0.4 -0.434 45.3-150.6 -70.7 149.7 -24.7 -9.9 -9.5 71 18 B I E +D 57 0C 77 -14,-0.2 2,-0.3 -2,-0.1 -14,-0.2 -0.995 21.5 171.0-123.2 123.9 -24.0 -10.5 -13.2 72 19 B K E -D 56 0C 79 -16,-2.0 -16,-2.7 -2,-0.4 2,-0.6 -0.981 36.6-125.0-134.4 146.1 -23.5 -7.4 -15.4 73 20 B N E +D 55 0C 136 -2,-0.3 2,-0.3 -18,-0.2 -18,-0.3 -0.853 47.2 175.5 -85.6 116.4 -22.4 -6.8 -19.0 74 21 B V - 0 0 20 -20,-3.2 2,-0.0 -2,-0.6 -2,-0.0 -0.833 36.4 -83.2-128.8 163.0 -19.5 -4.4 -18.6 75 22 B A > - 0 0 65 -2,-0.3 4,-2.5 1,-0.1 5,-0.2 -0.339 39.0-126.3 -64.7 146.4 -16.8 -2.6 -20.7 76 23 B D H > S+ 0 0 91 1,-0.2 4,-3.0 2,-0.2 5,-0.3 0.874 107.4 50.7 -67.1 -39.6 -13.8 -4.8 -21.4 77 24 B G H > S+ 0 0 39 2,-0.2 4,-2.6 1,-0.2 5,-0.3 0.930 110.4 50.0 -64.6 -43.3 -11.2 -2.3 -20.1 78 25 B Y H >>S+ 0 0 80 3,-0.2 5,-2.3 2,-0.2 4,-1.2 0.940 116.6 43.3 -58.1 -45.2 -13.1 -1.9 -16.9 79 26 B A H <>S+ 0 0 0 -4,-2.5 5,-3.2 3,-0.2 6,-0.5 0.974 121.5 35.3 -63.7 -56.7 -13.3 -5.7 -16.5 80 27 B N H <5S+ 0 0 54 -4,-3.0 5,-0.4 1,-0.2 -3,-0.2 0.883 126.0 36.6 -71.4 -41.0 -9.7 -6.6 -17.4 81 28 B N H <5S+ 0 0 106 -4,-2.6 -1,-0.2 -5,-0.3 -3,-0.2 0.520 134.6 11.9 -98.6 -4.7 -7.9 -3.7 -16.0 82 29 B F T X5S+ 0 0 93 -4,-1.2 4,-2.2 -5,-0.3 6,-0.3 0.551 124.7 41.3-130.8 -62.1 -9.9 -3.1 -12.8 83 30 B L T 4XS+ 0 0 0 -5,-2.3 5,-2.7 1,-0.2 6,-0.9 0.929 124.6 34.7 -62.8 -48.3 -12.4 -5.7 -11.8 84 31 B F T >4 - 0 0 31 -2,-1.4 4,-2.8 1,-0.1 5,-0.3 -0.375 59.3-111.1 -71.5 154.9 -18.6 -18.1 -18.3 94 41 B P H > S+ 0 0 108 0, 0.0 4,-2.4 0, 0.0 5,-0.2 0.926 120.3 53.9 -56.0 -39.1 -20.6 -21.3 -17.9 95 42 B A H > S+ 0 0 10 1,-0.2 4,-2.0 2,-0.2 5,-0.2 0.913 111.4 43.7 -60.6 -44.9 -17.5 -22.9 -16.5 96 43 B N H > S+ 0 0 3 2,-0.2 4,-2.6 1,-0.2 5,-0.2 0.908 112.5 51.5 -70.5 -38.8 -17.0 -20.2 -13.9 97 44 B L H X S+ 0 0 46 -4,-2.8 4,-2.5 2,-0.2 -2,-0.2 0.912 111.1 48.9 -63.3 -41.8 -20.7 -20.0 -12.9 98 45 B K H X S+ 0 0 73 -4,-2.4 4,-2.0 -5,-0.3 -1,-0.2 0.939 112.5 47.0 -61.3 -46.6 -20.8 -23.8 -12.4 99 46 B A H X S+ 0 0 0 -4,-2.0 4,-1.6 -5,-0.2 -2,-0.2 0.905 113.7 48.1 -65.3 -38.8 -17.6 -23.7 -10.3 100 47 B L H X S+ 0 0 32 -4,-2.6 4,-2.3 2,-0.2 -1,-0.2 0.896 109.4 52.8 -67.8 -41.1 -18.9 -20.8 -8.2 101 48 B E H X S+ 0 0 112 -4,-2.5 4,-2.3 1,-0.2 -1,-0.2 0.875 108.3 51.4 -61.1 -36.4 -22.3 -22.4 -7.6 102 49 B A H < S+ 0 0 16 -4,-2.0 -1,-0.2 -71,-0.3 -2,-0.2 0.887 109.4 49.4 -68.6 -39.5 -20.6 -25.5 -6.4 103 50 B Q H < S+ 0 0 99 -4,-1.6 -2,-0.2 1,-0.2 -1,-0.2 0.933 111.9 48.6 -64.5 -47.5 -18.4 -23.6 -3.9 104 51 B K H < 0 0 179 -4,-2.3 -2,-0.2 -5,-0.1 -1,-0.2 0.936 360.0 360.0 -57.8 -52.4 -21.5 -21.7 -2.5 105 52 B Q < 0 0 167 -4,-2.3 0, 0.0 -5,-0.2 0, 0.0 -0.319 360.0 360.0 -58.9 360.0 -23.5 -24.9 -2.1