==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=20-JUL-2011 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER RNA BINDING PROTEIN 14-JUN-06 2HBB . COMPND 2 MOLECULE: 50S RIBOSOMAL PROTEIN L9; . SOURCE 2 ORGANISM_SCIENTIFIC: GEOBACILLUS STEAROTHERMOPHILUS; . AUTHOR J.-H.CHO,E.Y.KIM,H.SCHINDELIN,D.P.RALEIGH . 51 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 3730.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 36 70.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 10 19.6 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 1 2.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 3 5.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 3 5.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 14 27.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 3 5.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 1 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A M 0 0 50 0, 0.0 20,-2.0 0, 0.0 2,-0.4 0.000 360.0 360.0 360.0 153.0 10.8 21.1 8.4 2 2 A K E +A 20 0A 128 18,-0.2 37,-2.5 16,-0.1 2,-0.3 -0.638 360.0 176.5 -85.1 130.8 7.8 20.6 6.1 3 3 A V E -AB 19 38A 0 16,-2.9 16,-2.1 -2,-0.4 2,-0.5 -0.875 30.2-129.8-129.6 161.7 6.3 17.1 6.0 4 4 A I E -AB 18 37A 5 33,-2.6 33,-1.7 -2,-0.3 2,-0.3 -0.969 29.7-131.6-109.2 121.3 3.4 15.3 4.4 5 5 A F E - B 0 36A 2 12,-2.9 11,-2.8 -2,-0.5 31,-0.3 -0.532 24.2-179.8 -76.1 128.7 1.3 13.3 6.9 6 6 A L S S+ 0 0 50 29,-3.0 2,-0.3 -2,-0.3 30,-0.2 0.586 75.3 19.5 -96.9 -16.7 0.5 9.7 5.7 7 7 A K S S- 0 0 117 28,-1.2 -1,-0.2 7,-0.1 2,-0.2 -0.959 94.3 -90.1-147.4 154.7 -1.5 9.0 8.9 8 8 A D - 0 0 113 -2,-0.3 2,-0.5 6,-0.2 6,-0.3 -0.485 34.8-166.5 -64.3 139.2 -3.3 11.1 11.6 9 9 A V B >> -C 13 0B 14 4,-4.2 4,-2.9 -2,-0.2 3,-2.5 -0.949 26.4-122.1-129.9 110.3 -1.0 11.9 14.5 10 10 A K T 34 S+ 0 0 216 -2,-0.5 4,-0.1 1,-0.3 -2,-0.0 -0.239 94.3 9.6 -61.2 127.9 -3.1 13.2 17.4 11 11 A G T 34 S+ 0 0 82 1,-0.1 -1,-0.3 2,-0.0 3,-0.1 0.205 132.5 52.3 92.9 -18.1 -2.0 16.6 18.4 12 12 A K T <4 S- 0 0 94 -3,-2.5 2,-0.3 1,-0.3 -2,-0.2 0.742 108.4 -30.8-119.7 -45.2 0.3 17.0 15.4 13 13 A G B < -C 9 0B 8 -4,-2.9 -4,-4.2 6,-0.0 2,-0.3 -0.995 42.1-117.4-175.8 168.2 -1.4 16.4 12.1 14 14 A K > - 0 0 136 -2,-0.3 3,-2.3 -6,-0.3 -9,-0.3 -0.908 48.3 -84.9-124.0 144.0 -3.9 14.6 9.9 15 15 A K T 3 S+ 0 0 152 -2,-0.3 -9,-0.2 1,-0.2 -7,-0.1 -0.185 115.7 23.1 -46.2 124.4 -3.5 12.3 7.0 16 16 A G T 3 S+ 0 0 56 -11,-2.8 -1,-0.2 1,-0.3 2,-0.1 0.084 91.2 125.3 103.3 -23.8 -3.0 14.5 3.8 17 17 A E < - 0 0 75 -3,-2.3 -12,-2.9 -13,-0.1 2,-0.5 -0.424 47.0-153.4 -73.1 144.8 -1.8 17.7 5.5 18 18 A I E +A 4 0A 84 -14,-0.2 2,-0.3 -2,-0.1 -14,-0.2 -0.977 37.9 137.7-114.0 117.1 1.4 19.3 4.5 19 19 A K E -A 3 0A 68 -16,-2.1 -16,-2.9 -2,-0.5 2,-0.2 -0.983 52.4 -89.3-158.9 169.1 2.9 21.3 7.3 20 20 A N E +A 2 0A 116 -2,-0.3 2,-0.3 -18,-0.2 -18,-0.2 -0.585 42.4 169.5 -87.2 140.1 5.9 22.4 9.3 21 21 A V - 0 0 12 -20,-2.0 2,-0.1 -2,-0.2 -9,-0.0 -0.941 44.7 -75.6-140.0 165.4 7.0 20.3 12.4 22 22 A A > - 0 0 63 -2,-0.3 4,-2.3 1,-0.1 5,-0.2 -0.381 39.8-130.6 -59.8 140.6 10.0 20.3 14.6 23 23 A D H > S+ 0 0 90 1,-0.2 4,-2.8 2,-0.2 5,-0.2 0.887 105.6 51.6 -63.4 -41.5 13.0 18.6 12.9 24 24 A G H > S+ 0 0 41 1,-0.2 4,-2.3 2,-0.2 -1,-0.2 0.843 110.4 49.8 -67.0 -31.5 13.7 16.2 15.9 25 25 A Y H >>S+ 0 0 58 2,-0.2 5,-1.9 3,-0.2 4,-1.3 0.905 112.5 46.2 -74.1 -43.6 10.1 15.1 15.9 26 26 A A H <>S+ 0 0 0 -4,-2.3 5,-3.1 3,-0.2 6,-0.5 0.949 118.8 42.3 -58.1 -52.5 10.1 14.4 12.2 27 27 A N H <5S+ 0 0 87 -4,-2.8 5,-0.5 1,-0.2 -2,-0.2 0.945 123.4 33.4 -62.4 -46.8 13.5 12.5 12.3 28 28 A N H <5S+ 0 0 129 -4,-2.3 -1,-0.2 -5,-0.2 -3,-0.2 0.564 136.1 11.2 -92.8 -12.5 13.0 10.5 15.5 29 29 A F T X5S+ 0 0 78 -4,-1.3 4,-2.4 -5,-0.2 6,-0.3 0.597 123.2 41.8-129.1 -69.0 9.2 9.8 15.3 30 30 A L T 4XS+ 0 0 0 -5,-1.9 5,-2.9 2,-0.2 6,-1.0 0.928 123.3 34.8 -58.5 -53.0 7.3 10.6 12.1 31 31 A F T >4 - 0 0 38 -2,-1.4 4,-2.3 1,-0.1 3,-0.3 -0.461 64.1-111.8 -85.2 155.2 10.2 17.5 -1.2 41 41 A P H > S+ 0 0 104 0, 0.0 4,-2.0 0, 0.0 5,-0.2 0.887 119.4 52.0 -49.4 -45.3 9.2 18.0 -4.9 42 42 A A H > S+ 0 0 65 1,-0.2 4,-2.2 2,-0.2 5,-0.1 0.871 109.9 48.4 -59.6 -39.8 10.3 14.4 -5.6 43 43 A N H > S+ 0 0 51 -3,-0.3 4,-2.7 2,-0.2 -1,-0.2 0.871 108.8 52.5 -73.7 -36.3 8.3 13.0 -2.7 44 44 A L H X S+ 0 0 44 -4,-2.3 4,-2.6 2,-0.2 -1,-0.2 0.905 110.9 47.8 -65.4 -41.7 5.1 14.8 -3.7 45 45 A K H X S+ 0 0 159 -4,-2.0 4,-2.2 -5,-0.2 -2,-0.2 0.941 114.1 45.8 -60.5 -51.4 5.3 13.5 -7.2 46 46 A A H X S+ 0 0 38 -4,-2.2 4,-1.9 1,-0.2 -2,-0.2 0.909 113.6 50.2 -61.0 -41.2 5.9 10.0 -6.1 47 47 A L H X S+ 0 0 29 -4,-2.7 4,-2.1 2,-0.2 -1,-0.2 0.907 108.5 50.8 -65.9 -44.8 3.1 10.3 -3.5 48 48 A E H < S+ 0 0 125 -4,-2.6 -1,-0.2 1,-0.2 -2,-0.2 0.918 110.1 51.6 -59.8 -39.3 0.6 11.6 -6.0 49 49 A A H < S+ 0 0 81 -4,-2.2 -2,-0.2 1,-0.2 -1,-0.2 0.879 113.1 44.9 -60.3 -40.0 1.5 8.6 -8.3 50 50 A Q H < 0 0 148 -4,-1.9 -2,-0.2 -5,-0.2 -1,-0.2 0.764 360.0 360.0 -83.2 -20.3 0.9 6.2 -5.5 51 51 A K < 0 0 168 -4,-2.1 -3,-0.0 -5,-0.1 -4,-0.0 -0.339 360.0 360.0 -57.3 360.0 -2.4 7.6 -4.2