==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=3-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER DNA BINDING PROTEIN/DNA 17-DEC-93 1HCR . COMPND 2 MOLECULE: DNA (5'- . SOURCE 2 MOL_ID: 2; . AUTHOR J.-A.FENG,R.C.JOHNSON,R.E.DICKERSON . 52 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 4541.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 33 63.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 2 3.8 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 1 1.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 7 13.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 5 9.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 19 36.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 1 1.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 2 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 139 A G 0 0 131 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 168.6 77.5 65.5 34.5 2 140 A R - 0 0 221 1,-0.1 2,-0.5 0, 0.0 3,-0.0 -0.184 360.0 -84.6 -72.9 168.0 75.3 66.7 31.6 3 141 A P - 0 0 101 0, 0.0 -1,-0.1 0, 0.0 4,-0.1 -0.767 37.8-110.7 -87.9 131.4 74.6 70.4 30.8 4 142 A R - 0 0 168 -2,-0.5 4,-0.1 1,-0.1 0, 0.0 -0.282 32.4-136.4 -48.0 120.4 71.8 72.3 32.4 5 143 A A S S+ 0 0 39 1,-0.1 2,-0.8 2,-0.1 -1,-0.1 0.817 85.6 58.5 -69.0 -33.5 69.3 72.8 29.6 6 144 A I S S- 0 0 1 1,-0.1 2,-2.0 2,-0.0 5,-0.1 -0.877 87.8-130.1-107.1 118.6 68.4 76.5 30.0 7 145 A N > - 0 0 110 -2,-0.8 3,-1.7 1,-0.1 2,-1.2 -0.447 37.4-111.7 -71.5 73.5 71.4 78.5 29.8 8 146 A K T >> S+ 0 0 118 -2,-2.0 3,-2.0 1,-0.3 4,-0.8 0.047 114.2 57.8 20.2 -52.9 70.8 80.5 33.0 9 147 A H H 3> S+ 0 0 107 -2,-1.2 4,-1.7 1,-0.3 3,-0.4 0.798 102.1 63.7 -65.5 -20.7 70.1 84.0 31.8 10 148 A E H <> S+ 0 0 32 -3,-1.7 4,-2.3 1,-0.2 -1,-0.3 0.644 88.3 66.5 -73.5 -10.3 67.4 82.1 29.9 11 149 A Q H <> S+ 0 0 34 -3,-2.0 4,-2.4 2,-0.2 -1,-0.2 0.857 104.7 45.0 -75.5 -28.2 65.8 81.2 33.3 12 150 A E H X S+ 0 0 116 -4,-0.8 4,-2.5 -3,-0.4 -2,-0.2 0.998 111.7 52.0 -68.0 -59.8 65.1 85.0 33.7 13 151 A Q H X S+ 0 0 71 -4,-1.7 4,-2.3 1,-0.2 -2,-0.2 0.858 115.9 40.5 -43.3 -53.7 63.8 85.2 30.2 14 152 A I H X S+ 0 0 0 -4,-2.3 4,-2.2 2,-0.2 5,-0.4 0.990 108.5 57.0 -70.1 -58.5 61.4 82.3 30.7 15 153 A S H X S+ 0 0 36 -4,-2.4 4,-2.9 1,-0.2 5,-0.3 0.833 113.4 45.4 -35.7 -46.3 60.2 83.2 34.3 16 154 A R H X S+ 0 0 141 -4,-2.5 4,-2.0 1,-0.2 3,-0.4 0.965 111.8 47.7 -63.7 -70.5 59.1 86.4 32.9 17 155 A L H < S+ 0 0 30 -4,-2.3 5,-0.3 1,-0.3 -1,-0.2 0.781 117.8 40.9 -48.9 -40.1 57.5 85.2 29.7 18 156 A L H >X S+ 0 0 23 -4,-2.2 4,-1.1 1,-0.2 3,-0.9 0.903 112.7 51.5 -81.6 -33.1 55.4 82.5 31.4 19 157 A E H 3< S+ 0 0 161 -4,-2.9 -1,-0.2 -3,-0.4 -2,-0.2 0.722 106.7 58.5 -70.7 -18.2 54.4 84.5 34.5 20 158 A K T 3< S- 0 0 125 -4,-2.0 -1,-0.3 -5,-0.3 -2,-0.1 -0.319 140.7 -76.7 -98.6 46.3 53.3 87.1 32.0 21 159 A G T <4 S+ 0 0 65 -3,-0.9 -3,-0.2 1,-0.2 -2,-0.2 0.846 79.9 149.8 77.0 39.4 50.9 84.5 30.5 22 160 A H < - 0 0 45 -4,-1.1 2,-0.3 -5,-0.3 -1,-0.2 -0.884 41.2-128.1-114.3 134.2 53.0 82.1 28.4 23 161 A P > - 0 0 62 0, 0.0 4,-2.5 0, 0.0 3,-0.3 -0.562 9.4-141.1 -71.1 133.3 52.2 78.4 27.8 24 162 A R H > S+ 0 0 39 -2,-0.3 4,-2.4 1,-0.2 5,-0.2 0.936 100.8 62.1 -63.2 -42.8 55.0 76.0 28.4 25 163 A Q H 4 S+ 0 0 106 1,-0.2 4,-0.4 2,-0.2 -1,-0.2 0.893 111.2 43.6 -54.3 -33.6 54.1 73.8 25.4 26 164 A Q H >> S+ 0 0 73 -3,-0.3 3,-2.3 1,-0.2 4,-1.1 0.989 111.4 51.1 -69.0 -59.0 55.0 77.0 23.4 27 165 A L H 3X S+ 0 0 3 -4,-2.5 4,-1.6 1,-0.3 -2,-0.2 0.735 104.7 60.9 -54.9 -27.3 58.1 78.0 25.4 28 166 A A H 3<>S+ 0 0 6 -4,-2.4 5,-1.5 1,-0.2 -1,-0.3 0.502 105.2 41.9 -79.0 -13.2 59.6 74.5 25.0 29 167 A I H <45S+A 32 0A 143 -3,-2.3 3,-0.3 -4,-0.4 -1,-0.2 0.544 114.2 50.1-108.2 -11.3 59.8 74.3 21.2 30 168 A I H <5S+ 0 0 126 -4,-1.1 2,-0.8 1,-0.5 -2,-0.2 0.910 126.2 28.7 -79.8 -67.1 61.1 77.8 20.6 31 169 A F T <5S- 0 0 41 -4,-1.6 2,-1.4 -5,-0.1 -1,-0.5 -0.839 110.0-129.3 -86.8 121.5 63.8 77.2 23.2 32 170 A G B 5 +A 29 0A 67 -2,-0.8 2,-0.2 -3,-0.3 -3,-0.2 -0.514 60.0 121.7 -79.9 87.4 63.9 73.5 22.6 33 171 A I < - 0 0 31 -5,-1.5 2,-0.4 -2,-1.4 3,-0.0 -0.663 66.4 -91.5-127.5-173.3 63.6 71.8 25.9 34 172 A G >> - 0 0 35 -2,-0.2 4,-1.4 1,-0.1 3,-0.7 -0.858 27.7-122.9-102.0 151.9 61.1 69.3 27.0 35 173 A V H 3> S+ 0 0 42 -2,-0.4 4,-2.2 1,-0.2 5,-0.2 0.845 112.0 61.6 -59.2 -31.8 58.0 70.5 28.7 36 174 A S H 3> S+ 0 0 96 2,-0.2 4,-1.5 1,-0.2 -1,-0.2 0.906 102.0 53.2 -62.5 -36.4 58.8 68.2 31.7 37 175 A T H <> S+ 0 0 29 -3,-0.7 4,-2.4 2,-0.2 3,-0.3 0.936 106.9 50.9 -60.0 -54.0 62.0 70.3 32.2 38 176 A L H X S+ 0 0 0 -4,-1.4 4,-2.5 1,-0.3 -2,-0.2 0.917 109.7 48.8 -54.9 -49.4 60.1 73.6 32.2 39 177 A Y H < S+ 0 0 111 -4,-2.2 -1,-0.3 1,-0.2 -2,-0.2 0.864 111.7 53.0 -65.3 -25.6 57.6 72.3 34.9 40 178 A R H < S+ 0 0 170 -4,-1.5 -2,-0.2 -3,-0.3 -1,-0.2 0.941 116.5 36.3 -71.1 -44.9 60.7 71.1 36.9 41 179 A Y H < S+ 0 0 41 -4,-2.4 -2,-0.2 1,-0.3 -3,-0.2 0.958 134.7 20.3 -68.4 -54.8 62.4 74.5 36.8 42 180 A F S < S+ 0 0 32 -4,-2.5 -1,-0.3 -5,-0.2 -2,-0.0 -0.956 84.0 156.9-117.7 103.3 59.4 76.8 37.1 43 181 A P - 0 0 82 0, 0.0 2,-0.2 0, 0.0 -3,-0.1 0.450 24.9-161.7 -93.5-122.6 56.5 74.8 38.6 44 182 A A - 0 0 97 -5,-0.1 2,-0.3 0, 0.0 -5,-0.0 -0.646 41.7 -50.5 175.5 -97.2 53.4 76.0 40.5 45 183 A S S S- 0 0 104 -2,-0.2 2,-1.3 2,-0.0 0, 0.0 -0.995 70.3 -17.9-167.9 157.7 51.2 73.6 42.8 46 184 A S + 0 0 98 -2,-0.3 2,-1.8 1,-0.1 0, 0.0 -0.244 68.1 107.6 54.6 -27.0 49.2 70.4 43.6 47 185 A I S S+ 0 0 175 -2,-1.3 2,-0.1 2,-0.0 -1,-0.1 -0.365 71.3 172.2 -90.2 78.1 47.9 68.1 40.6 48 186 A K + 0 0 155 -2,-1.8 2,-0.1 1,-0.1 -2,-0.0 -0.448 30.5 77.3-124.9 164.6 50.3 65.3 41.2 49 187 A K - 0 0 130 -2,-0.1 2,-0.3 2,-0.0 -1,-0.1 -0.518 32.4 -88.5 175.1 -85.6 52.4 62.1 41.2 50 188 A R + 0 0 173 -2,-0.1 0, 0.0 1,-0.0 0, 0.0 -0.988 36.7 96.2-179.0-179.1 55.1 59.7 39.7 51 189 A M 0 0 164 -2,-0.3 -1,-0.0 0, 0.0 -2,-0.0 0.405 360.0 360.0 74.1 144.6 56.9 56.9 37.6 52 190 A N 0 0 235 0, 0.0 -2,-0.0 0, 0.0 0, 0.0 0.177 360.0 360.0-132.3 360.0 58.8 56.4 34.4