==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=3-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER RNA BINDING PROTEIN 18-MAY-99 1HD0 . COMPND 2 MOLECULE: PROTEIN (HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR T.NAGATA,Y.KURIHARA,G.MATSUDA,J.SAEKI,T.KOHNO,Y.YANAGIDA, . 75 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 5304.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 48 64.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 18 24.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 1 1.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 1 1.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 7 9.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 6 8.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 15 20.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 1 1.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 2 1 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 98 A K 0 0 166 0, 0.0 2,-0.4 0, 0.0 46,-0.3 0.000 360.0 360.0 360.0 103.7 76.5 -5.8 2.2 2 99 A M E -A 46 0A 2 44,-3.1 44,-3.0 72,-0.3 2,-0.3 -0.891 360.0-131.8-111.6 139.9 72.9 -4.9 1.4 3 100 A F E -A 45 0A 52 -2,-0.4 70,-2.4 42,-0.2 2,-0.5 -0.688 14.1-159.6 -91.0 142.4 72.0 -3.0 -1.8 4 101 A I E -AB 44 72A 0 40,-2.0 40,-1.6 -2,-0.3 2,-0.5 -0.872 10.4-179.3-124.2 102.7 69.6 -0.0 -1.5 5 102 A G E +AB 43 71A 13 66,-1.4 66,-6.6 -2,-0.5 38,-0.2 -0.855 60.0 58.2-102.2 129.0 67.8 1.0 -4.7 6 103 A G + 0 0 23 36,-1.6 37,-0.3 -2,-0.5 -1,-0.2 0.402 62.9 151.5 133.8 5.6 65.4 4.0 -4.5 7 104 A L - 0 0 5 35,-0.8 -1,-0.1 -3,-0.4 2,-0.1 -0.234 43.6-117.6 -62.6 155.3 67.7 6.8 -3.3 8 105 A S > - 0 0 29 60,-0.1 3,-1.5 1,-0.1 35,-0.2 -0.365 26.9-101.8 -88.7 173.6 66.7 10.4 -4.3 9 106 A W T 3 S+ 0 0 184 1,-0.3 -1,-0.1 33,-0.1 -2,-0.1 0.737 125.6 45.7 -68.3 -18.4 68.9 12.7 -6.4 10 107 A D T 3 S+ 0 0 139 56,-0.1 -1,-0.3 2,-0.0 2,-0.1 0.116 85.1 129.4-109.8 22.1 69.9 14.5 -3.2 11 108 A T < - 0 0 6 -3,-1.5 2,-0.3 4,-0.1 22,-0.1 -0.431 37.3-166.6 -75.3 151.7 70.6 11.4 -1.1 12 109 A T > - 0 0 67 -2,-0.1 4,-2.2 18,-0.1 5,-0.5 -0.987 37.8-111.6-139.4 149.4 73.9 11.2 0.8 13 110 A K H > S+ 0 0 120 -2,-0.3 4,-0.9 1,-0.2 5,-0.1 0.699 118.4 57.8 -53.3 -12.3 75.8 8.3 2.5 14 111 A K H > S+ 0 0 161 2,-0.2 4,-2.7 3,-0.2 5,-0.3 0.959 107.0 39.0 -83.6 -61.8 74.9 10.3 5.7 15 112 A D H > S+ 0 0 41 1,-0.2 4,-2.7 2,-0.2 5,-0.2 0.933 124.5 42.4 -55.0 -44.9 71.1 10.4 5.5 16 113 A L H X S+ 0 0 0 -4,-2.2 4,-2.1 2,-0.2 5,-0.3 0.966 111.3 53.6 -68.3 -50.2 71.0 6.8 4.2 17 114 A K H X S+ 0 0 91 -4,-0.9 4,-0.6 -5,-0.5 -2,-0.2 0.921 117.5 38.9 -51.3 -43.7 73.7 5.5 6.6 18 115 A D H >X S+ 0 0 98 -4,-2.7 3,-2.4 2,-0.2 4,-0.8 0.984 107.3 58.9 -73.5 -57.5 71.7 6.9 9.5 19 116 A Y H 3< S+ 0 0 77 -4,-2.7 3,-0.4 -5,-0.3 -1,-0.2 0.871 117.0 39.9 -39.1 -33.8 68.2 6.1 8.3 20 117 A F H >X S+ 0 0 0 -4,-2.1 3,-2.7 -5,-0.2 4,-1.1 0.661 92.3 84.4 -90.9 -15.9 69.6 2.6 8.3 21 118 A S H << S+ 0 0 62 -3,-2.4 -1,-0.2 -4,-0.6 -2,-0.2 0.631 82.0 68.5 -61.6 -5.5 71.5 3.2 11.6 22 119 A K T 3< S+ 0 0 190 -4,-0.8 -1,-0.3 -3,-0.4 -2,-0.1 0.630 96.0 51.5 -87.9 -13.0 68.2 2.2 13.1 23 120 A F T <4 S- 0 0 45 -3,-2.7 2,-0.3 1,-0.3 -2,-0.2 0.870 126.3 -55.9 -89.6 -41.6 68.5 -1.4 11.9 24 121 A G S < S- 0 0 23 -4,-1.1 2,-0.8 32,-0.1 -1,-0.3 -0.948 76.0 -46.6-175.6-166.6 72.0 -2.1 13.4 25 122 A E - 0 0 133 -2,-0.3 24,-1.4 -3,-0.1 2,-0.5 -0.737 53.3-155.3 -88.2 111.9 75.6 -0.8 13.3 26 123 A V E -C 48 0A 21 -2,-0.8 22,-0.3 22,-0.3 3,-0.1 -0.720 15.8-171.4 -89.4 130.5 76.7 -0.1 9.7 27 124 A V E S+ 0 0 93 20,-1.8 2,-0.3 -2,-0.5 21,-0.2 0.675 75.0 17.6 -90.1 -18.1 80.4 -0.2 9.0 28 125 A D E +C 47 0A 88 19,-1.6 19,-2.5 -11,-0.1 2,-0.3 -0.983 58.9 169.0-149.8 162.0 79.9 1.2 5.5 29 126 A C E -C 46 0A 11 -2,-0.3 2,-0.3 17,-0.3 17,-0.2 -0.952 6.2-178.2-169.3 149.0 77.4 3.0 3.3 30 127 A T E -C 45 0A 63 15,-3.0 15,-0.6 -2,-0.3 2,-0.5 -0.976 19.9-135.2-150.6 165.0 77.3 4.7 -0.1 31 128 A L - 0 0 38 -2,-0.3 2,-1.6 13,-0.3 13,-0.3 -0.952 6.9-155.4-129.0 116.9 75.0 6.7 -2.5 32 129 A K + 0 0 81 -2,-0.5 11,-1.1 1,-0.2 9,-0.5 -0.549 58.2 113.2 -89.0 77.1 74.8 5.9 -6.2 33 130 A L - 0 0 1 -2,-1.6 7,-0.4 7,-0.3 -1,-0.2 -0.078 40.8-176.5-136.1 37.3 73.6 9.3 -7.5 34 131 A D B > +D 39 0B 64 5,-0.7 5,-3.8 1,-0.2 6,-0.6 -0.019 13.9 167.8 -39.3 78.9 76.5 10.7 -9.5 35 132 A P T 5 + 0 0 87 0, 0.0 -1,-0.2 0, 0.0 -3,-0.0 0.375 62.8 68.5 -81.9 4.7 74.6 13.9 -10.0 36 133 A I T 5S+ 0 0 141 1,-0.1 -2,-0.1 -3,-0.0 0, 0.0 0.907 108.4 30.1 -89.6 -49.0 77.7 15.6 -11.3 37 134 A T T 5S- 0 0 76 -3,-0.1 -1,-0.1 1,-0.0 -3,-0.1 0.349 123.1 -98.7 -90.0 8.0 78.1 13.7 -14.6 38 135 A G T 5S+ 0 0 62 -4,-0.2 -4,-0.1 -5,-0.1 -2,-0.0 0.863 93.2 120.3 79.7 34.9 74.4 13.2 -14.8 39 136 A R B < +D 34 0B 115 -5,-3.8 2,-1.6 -6,-0.1 -5,-0.7 0.089 22.1 145.2-118.1 24.0 74.5 9.7 -13.4 40 137 A S + 0 0 29 -6,-0.6 -7,-0.3 -7,-0.4 -8,-0.1 -0.400 17.7 173.7 -63.8 90.2 72.3 10.2 -10.3 41 138 A R - 0 0 190 -2,-1.6 -35,-0.3 -9,-0.5 -34,-0.2 0.003 42.0-126.7 -89.7 33.5 70.7 6.7 -10.3 42 139 A G S S+ 0 0 12 -36,-0.1 -36,-1.6 -37,-0.1 -35,-0.8 0.796 76.8 105.0 21.6 66.2 69.0 7.4 -7.0 43 140 A F E +A 5 0A 37 -11,-1.1 -38,-0.2 -37,-0.3 -2,-0.2 -0.772 39.1 163.2-170.4 121.4 70.5 4.2 -5.6 44 141 A G E -A 4 0A 0 -40,-1.6 -40,-2.0 -13,-0.3 2,-0.3 -0.546 31.8-104.3-127.0-165.9 73.4 3.5 -3.2 45 142 A F E -AC 3 30A 60 -15,-0.6 -15,-3.0 -42,-0.2 2,-0.4 -0.895 17.8-154.1-125.8 157.7 74.6 0.6 -1.1 46 143 A V E -AC 2 29A 0 -44,-3.0 -44,-3.1 -2,-0.3 2,-0.5 -0.989 1.1-164.3-131.2 137.1 74.5 -0.2 2.7 47 144 A L E - C 0 28A 36 -19,-2.5 -20,-1.8 -2,-0.4 -19,-1.6 -0.711 12.2-162.3-124.0 85.0 77.0 -2.4 4.6 48 145 A F E - C 0 26A 15 -2,-0.5 -22,-0.3 -22,-0.3 3,-0.1 -0.020 21.6-127.6 -55.3 169.0 75.6 -3.4 8.0 49 146 A K S S+ 0 0 133 -24,-1.4 2,-0.3 1,-0.2 -23,-0.1 0.787 87.4 26.1 -93.3 -30.5 78.1 -4.7 10.5 50 147 A E S > S- 0 0 78 -25,-0.2 4,-1.6 1,-0.1 3,-0.5 -0.974 76.8-120.3-134.3 148.7 76.3 -7.9 11.4 51 148 A S H >> S+ 0 0 101 -2,-0.3 4,-2.8 1,-0.2 3,-0.9 0.958 111.8 60.3 -50.2 -56.1 73.9 -10.2 9.6 52 149 A E H 3> S+ 0 0 129 1,-0.3 4,-2.1 2,-0.2 -1,-0.2 0.899 103.7 52.3 -39.8 -47.8 71.2 -9.8 12.2 53 150 A S H 3> S+ 0 0 4 -3,-0.5 4,-1.9 2,-0.2 -1,-0.3 0.925 113.8 43.1 -58.2 -42.1 71.3 -6.1 11.4 54 151 A V H < S+ 0 0 88 -4,-2.0 3,-0.6 -5,-0.2 -1,-0.2 0.837 93.3 70.5 -85.4 -33.7 65.3 -6.8 5.0 59 156 A D H 3< S+ 0 0 101 -4,-2.1 2,-0.4 -3,-0.3 -2,-0.2 0.859 114.0 28.9 -52.0 -32.5 62.3 -8.2 7.1 60 157 A Q T 3< + 0 0 124 -4,-1.0 -1,-0.3 1,-0.1 -4,-0.0 -0.732 63.7 171.7-132.0 87.4 60.6 -4.9 6.2 61 158 A K < + 0 0 141 -3,-0.6 2,-1.9 -2,-0.4 9,-0.4 0.198 47.7 115.1 -81.8 24.5 61.7 -3.4 2.9 62 159 A E + 0 0 164 7,-0.1 -1,-0.2 9,-0.1 2,-0.2 -0.375 47.6 154.8 -87.8 58.9 58.9 -0.8 3.2 63 160 A H + 0 0 4 -2,-1.9 7,-0.4 7,-0.4 -2,-0.1 -0.513 26.8 179.5 -87.3 157.2 61.5 1.9 3.5 64 161 A K + 0 0 144 5,-0.2 3,-0.5 -2,-0.2 5,-0.3 -0.413 14.0 160.7-157.2 72.9 61.0 5.5 2.5 65 162 A L B > S+E 68 0C 8 3,-1.1 3,-1.7 1,-0.2 -49,-0.1 -0.650 70.1 15.9 -96.7 155.5 64.0 7.8 3.1 66 163 A N T 3 S- 0 0 76 1,-0.3 -1,-0.2 -2,-0.2 -56,-0.1 0.677 137.9 -61.4 60.5 10.7 64.5 11.2 1.4 67 164 A G T 3 S+ 0 0 71 -3,-0.5 2,-0.3 1,-0.3 -1,-0.3 0.755 121.7 88.5 87.2 24.5 60.7 10.9 0.7 68 165 A K B < S-E 65 0C 123 -3,-1.7 -3,-1.1 -60,-0.0 -1,-0.3 -0.994 74.3-113.2-150.4 156.6 61.1 7.7 -1.4 69 166 A V - 0 0 77 -2,-0.3 2,-0.3 -5,-0.3 -5,-0.2 -0.262 29.4-142.1 -82.4 176.1 61.2 4.0 -1.0 70 167 A I - 0 0 3 -7,-0.4 -7,-0.4 -9,-0.4 -64,-0.3 -0.997 16.0-121.2-142.2 147.5 64.3 1.8 -1.6 71 168 A D E -B 5 0A 90 -66,-6.6 -66,-1.4 -2,-0.3 2,-0.3 -0.683 33.9-158.8 -90.0 90.6 65.0 -1.6 -3.1 72 169 A P E +B 4 0A 13 0, 0.0 -68,-0.2 0, 0.0 2,-0.2 -0.526 29.1 142.6 -71.4 125.3 66.6 -3.4 -0.2 73 170 A K - 0 0 127 -70,-2.4 2,-0.9 -2,-0.3 -70,-0.1 -0.691 65.9 -65.3-143.4-162.5 68.7 -6.4 -1.3 74 171 A R 0 0 211 -72,-0.3 -72,-0.3 -2,-0.2 -70,-0.1 -0.210 360.0 360.0 -90.1 49.5 72.0 -8.2 -0.5 75 172 A A 0 0 29 -2,-0.9 -73,-0.2 -72,-0.2 -1,-0.1 0.574 360.0 360.0 -3.2 360.0 74.1 -5.2 -1.6