==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=3-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER RNA BINDING PROTEIN 18-MAY-99 1HD1 . COMPND 2 MOLECULE: PROTEIN (HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR T.NAGATA,Y.KURIHARA,G.MATSUDA,J.SAEKI,T.KOHNO,Y.YANAGIDA, . 75 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 5074.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 49 65.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 22 29.3 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 1 1.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 1 1.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 5 6.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 6 8.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 14 18.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 1 1.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 1 0 1 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 98 A K 0 0 162 0, 0.0 2,-0.3 0, 0.0 46,-0.3 0.000 360.0 360.0 360.0 160.5 76.3 -5.7 2.7 2 99 A M E -A 46 0A 2 44,-3.0 44,-1.6 72,-0.2 2,-0.5 -0.917 360.0-114.6-147.6 175.2 73.1 -4.9 0.8 3 100 A F E -AB 45 73A 58 70,-1.0 70,-0.9 -2,-0.3 2,-0.6 -0.957 19.3-164.4-119.7 130.9 71.7 -2.9 -2.2 4 101 A I E -AB 44 72A 0 40,-2.1 40,-2.5 -2,-0.5 2,-0.4 -0.888 8.8-172.0-117.0 105.0 69.3 0.1 -1.8 5 102 A G E +AB 43 71A 15 66,-1.3 66,-1.1 -2,-0.6 38,-0.2 -0.773 61.3 52.1 -97.3 139.2 67.6 1.2 -5.0 6 103 A G + 0 0 29 36,-1.6 37,-0.2 -2,-0.4 2,-0.2 0.718 66.1 162.6 110.5 33.9 65.4 4.3 -5.0 7 104 A L - 0 0 9 35,-1.5 -1,-0.2 -3,-0.3 2,-0.1 -0.572 41.3-109.8 -84.7 148.7 67.8 7.0 -3.5 8 105 A S > - 0 0 30 -2,-0.2 3,-2.3 1,-0.1 34,-0.1 -0.473 26.5-112.8 -76.5 147.5 67.0 10.7 -4.1 9 106 A W T 3 S+ 0 0 161 1,-0.3 27,-0.1 -2,-0.1 -1,-0.1 0.720 120.2 46.3 -52.1 -17.2 69.3 12.7 -6.4 10 107 A D T 3 S+ 0 0 115 24,-0.1 -1,-0.3 25,-0.1 2,-0.1 -0.054 85.8 124.0-117.9 35.6 70.4 14.5 -3.2 11 108 A T < - 0 0 5 -3,-2.3 2,-0.3 22,-0.2 22,-0.2 -0.392 38.1-165.8 -88.3 171.3 71.0 11.6 -0.8 12 109 A T > - 0 0 54 -2,-0.1 4,-1.7 18,-0.1 5,-0.3 -0.945 39.0-100.3-149.1 170.6 74.3 10.9 1.0 13 110 A K H > S+ 0 0 105 -2,-0.3 4,-0.8 3,-0.2 5,-0.1 0.663 119.8 54.1 -70.5 -11.2 76.1 8.2 3.0 14 111 A K H > S+ 0 0 149 3,-0.2 4,-3.2 2,-0.2 5,-0.4 0.941 109.2 39.8 -87.4 -58.7 75.0 10.0 6.1 15 112 A D H > S+ 0 0 53 1,-0.2 4,-1.8 2,-0.2 -2,-0.2 0.873 124.4 43.0 -60.6 -32.4 71.2 10.4 5.7 16 113 A L H X S+ 0 0 0 -4,-1.7 4,-1.7 2,-0.2 -1,-0.2 0.918 115.1 47.6 -80.0 -42.8 71.1 6.8 4.3 17 114 A K H < S+ 0 0 82 -4,-0.8 4,-0.4 -5,-0.3 -2,-0.2 0.956 117.6 42.6 -63.2 -46.5 73.5 5.3 6.9 18 115 A D H >X S+ 0 0 112 -4,-3.2 3,-2.5 2,-0.2 4,-0.6 0.973 109.1 56.3 -66.1 -49.2 71.7 7.0 9.8 19 116 A Y H >< S+ 0 0 68 -4,-1.8 3,-0.6 -5,-0.4 -1,-0.2 0.895 115.2 41.5 -48.3 -35.4 68.3 6.1 8.3 20 117 A F G >X S+ 0 0 0 -4,-1.7 3,-1.4 1,-0.2 4,-1.2 0.520 92.1 85.1 -90.7 -3.6 69.7 2.6 8.4 21 118 A S G <4 S+ 0 0 69 -3,-2.5 -1,-0.2 -4,-0.4 -2,-0.2 0.650 79.1 69.1 -71.7 -9.5 71.3 3.1 11.9 22 119 A K G << S+ 0 0 154 -4,-0.6 -1,-0.3 -3,-0.6 -2,-0.1 0.688 98.8 48.4 -81.7 -15.8 67.8 2.1 13.3 23 120 A F T <4 S- 0 0 22 -3,-1.4 2,-0.3 1,-0.3 -2,-0.2 0.867 128.4 -62.9 -89.5 -40.9 68.3 -1.5 12.1 24 121 A G S < S- 0 0 17 -4,-1.2 -1,-0.3 32,-0.1 2,-0.2 -0.913 74.2 -40.0-177.5-156.2 71.8 -2.0 13.4 25 122 A E - 0 0 123 -2,-0.3 24,-2.6 -3,-0.1 25,-0.5 -0.566 48.3-152.5 -90.5 157.8 75.4 -0.7 13.1 26 123 A V E -C 48 0A 29 22,-0.3 22,-0.3 -2,-0.2 3,-0.1 -0.982 21.9-178.9-134.7 131.2 76.9 0.2 9.7 27 124 A V E S+ 0 0 94 20,-1.8 2,-0.3 -2,-0.4 21,-0.2 0.709 79.6 16.8 -95.0 -24.6 80.5 0.1 8.6 28 125 A D E +C 47 0A 82 19,-1.8 19,-2.6 -11,-0.0 -1,-0.2 -0.983 53.4 171.1-146.4 159.1 79.7 1.4 5.1 29 126 A C E -C 46 0A 5 -2,-0.3 17,-0.2 17,-0.3 2,-0.2 -0.652 12.2-170.2-170.5 105.6 77.0 3.1 3.1 30 127 A T E -C 45 0A 74 15,-0.9 15,-1.1 -2,-0.2 2,-0.3 -0.546 7.1-156.3 -97.7 166.2 77.3 4.5 -0.5 31 128 A L E -C 44 0A 20 13,-0.3 2,-1.6 -2,-0.2 3,-0.3 -0.819 6.2-165.9-146.4 104.3 74.9 6.6 -2.5 32 129 A K E +C 43 0A 73 11,-1.5 11,-1.6 -2,-0.3 10,-1.5 -0.557 64.8 94.5 -89.9 77.4 74.8 6.7 -6.3 33 130 A L E +C 40 0A 6 -2,-1.6 7,-0.4 7,-0.3 -1,-0.2 0.099 46.1 168.9-149.4 21.1 72.7 9.9 -6.7 34 131 A D E > -C 39 0A 50 5,-0.9 6,-0.8 -3,-0.3 5,-0.5 -0.195 11.3-175.2 -45.8 109.3 75.3 12.6 -7.1 35 132 A P T 5S+ 0 0 61 0, 0.0 -1,-0.2 0, 0.0 -25,-0.1 0.611 83.1 40.5 -84.1 -14.6 73.2 15.6 -8.3 36 133 A I T 5S+ 0 0 143 -27,-0.1 -2,-0.1 1,-0.1 -26,-0.0 0.811 115.8 45.3-101.6 -41.0 76.3 17.8 -8.7 37 134 A T T 5S- 0 0 69 1,-0.1 -3,-0.1 2,-0.0 -1,-0.1 0.172 104.2-122.3 -89.2 21.4 78.8 15.3 -10.3 38 135 A G T 5S+ 0 0 66 1,-0.2 -4,-0.1 -5,-0.1 -1,-0.1 0.810 82.2 121.8 45.0 25.7 76.1 14.0 -12.7 39 136 A R E < + C 0 34A 168 -5,-0.5 -5,-0.9 -6,-0.0 2,-0.9 -0.014 26.3 135.4-106.0 30.5 77.0 10.7 -11.0 40 137 A S E + C 0 33A 32 -6,-0.8 -7,-0.3 -7,-0.4 -8,-0.1 -0.673 24.9 174.9 -82.6 108.6 73.4 10.0 -9.8 41 138 A R E - 0 0 162 -2,-0.9 -8,-0.2 -9,-0.8 -1,-0.2 0.552 52.4-111.5 -89.6 -5.5 72.7 6.3 -10.6 42 139 A G E S+ 0 0 31 -10,-1.5 -36,-1.6 1,-0.2 -35,-1.5 0.516 90.1 53.3 89.8 3.9 69.3 6.5 -8.8 43 140 A F E -AC 5 32A 35 -11,-1.6 -11,-1.5 -37,-0.2 -2,-0.3 -0.995 58.7-160.4-161.3 165.4 70.4 4.2 -6.0 44 141 A G E -AC 4 31A 0 -40,-2.5 -40,-2.1 -13,-0.3 2,-0.3 -0.706 21.7-111.7-136.8-170.7 73.1 3.6 -3.3 45 142 A F E -AC 3 30A 54 -15,-1.1 -15,-0.9 -42,-0.2 2,-0.4 -0.897 15.4-153.4-128.7 160.7 74.4 0.7 -1.2 46 143 A V E -AC 2 29A 0 -44,-1.6 -44,-3.0 -2,-0.3 2,-0.4 -0.991 3.9-168.7-134.2 140.4 74.3 -0.1 2.6 47 144 A L E - C 0 28A 34 -19,-2.6 -19,-1.8 -2,-0.4 -20,-1.8 -0.841 11.2-161.1-132.1 98.8 76.8 -2.3 4.6 48 145 A F E - C 0 26A 16 -2,-0.4 -22,-0.3 -22,-0.3 3,-0.0 -0.180 20.9-129.7 -71.0 170.2 75.7 -3.2 8.1 49 146 A K S S+ 0 0 135 -24,-2.6 2,-0.3 -22,-0.1 -23,-0.1 0.672 86.6 36.2 -96.2 -18.9 78.2 -4.4 10.7 50 147 A E S > S- 0 0 91 -25,-0.5 4,-1.4 1,-0.1 -2,-0.1 -0.902 72.4-128.3-131.4 162.3 76.3 -7.5 11.8 51 148 A S H > S+ 0 0 84 -2,-0.3 4,-2.7 2,-0.2 5,-0.3 0.948 109.3 54.6 -74.7 -47.4 74.2 -10.2 10.1 52 149 A E H > S+ 0 0 129 1,-0.2 4,-1.6 2,-0.2 -1,-0.2 0.880 107.9 52.7 -54.4 -35.1 71.3 -9.9 12.6 53 150 A S H > S+ 0 0 7 2,-0.2 4,-1.8 1,-0.2 -1,-0.2 0.923 110.8 46.1 -68.8 -40.9 71.2 -6.2 11.8 54 151 A V H X S+ 0 0 16 -4,-1.4 4,-1.7 1,-0.2 5,-0.2 0.976 109.9 51.6 -66.7 -53.1 71.0 -6.8 8.0 55 152 A D H X S+ 0 0 75 -4,-2.7 4,-0.9 1,-0.2 -1,-0.2 0.894 107.9 56.6 -51.9 -37.8 68.3 -9.5 8.2 56 153 A K H >X S+ 0 0 103 -4,-1.6 3,-2.3 -5,-0.3 4,-0.8 0.992 106.5 44.7 -59.2 -62.1 66.3 -7.0 10.3 57 154 A V H 3< S+ 0 0 0 -4,-1.8 -1,-0.2 1,-0.3 3,-0.2 0.778 115.1 52.6 -55.4 -20.5 66.2 -4.2 7.7 58 155 A M H 3< S+ 0 0 80 -4,-1.7 3,-0.3 -5,-0.2 -1,-0.3 0.636 87.8 80.2 -89.8 -13.2 65.4 -6.9 5.2 59 156 A D H << S+ 0 0 96 -3,-2.3 2,-0.4 -4,-0.9 -1,-0.2 0.877 110.6 18.1 -61.1 -33.5 62.5 -8.2 7.3 60 157 A Q < - 0 0 107 -4,-0.8 -1,-0.3 -3,-0.2 -4,-0.0 -0.841 60.6-173.1-142.3 104.5 60.4 -5.3 5.8 61 158 A K + 0 0 128 -2,-0.4 2,-2.0 -3,-0.3 9,-0.4 0.251 57.6 112.3 -81.8 20.3 61.5 -3.5 2.7 62 159 A E + 0 0 154 7,-0.1 -1,-0.2 9,-0.1 9,-0.1 -0.414 49.3 146.3 -87.6 62.9 58.6 -1.0 3.2 63 160 A H - 0 0 13 -2,-2.0 7,-0.1 7,-0.3 -2,-0.1 -0.104 35.1-165.7 -86.8-169.3 61.2 1.7 3.9 64 161 A K + 0 0 145 5,-0.2 3,-0.4 4,-0.0 5,-0.3 -0.169 17.6 160.7 179.9 75.0 61.0 5.4 3.0 65 162 A L B > +D 68 0B 3 3,-1.4 3,-2.2 1,-0.2 -49,-0.1 -0.703 69.8 16.7-103.7 157.6 64.1 7.6 3.2 66 163 A N T 3 S- 0 0 63 1,-0.3 -1,-0.2 -2,-0.3 3,-0.1 0.718 135.9 -62.6 58.4 15.2 64.6 11.0 1.5 67 164 A G T 3 S+ 0 0 68 -3,-0.4 2,-0.3 1,-0.2 -1,-0.3 0.728 123.9 86.7 83.0 20.1 60.8 11.0 1.2 68 165 A K B < S-D 65 0B 131 -3,-2.2 -3,-1.4 -62,-0.0 -1,-0.2 -0.998 76.6-115.4-150.8 146.9 60.9 7.9 -1.0 69 166 A V - 0 0 82 -2,-0.3 2,-0.3 -5,-0.3 -5,-0.2 0.006 32.7-152.0 -69.4-174.3 60.9 4.1 -0.5 70 167 A I - 0 0 7 -9,-0.4 -7,-0.3 -7,-0.1 -64,-0.2 -0.911 18.0-113.9-150.6 178.2 63.9 1.9 -1.5 71 168 A D E -B 5 0A 90 -66,-1.1 -66,-1.3 -2,-0.3 2,-0.3 -0.817 29.8-165.3-126.0 93.2 64.9 -1.6 -2.7 72 169 A P E +B 4 0A 6 0, 0.0 2,-0.3 0, 0.0 -68,-0.2 -0.559 20.6 156.1 -77.6 135.8 67.0 -3.4 -0.1 73 170 A K E -B 3 0A 108 -70,-0.9 -70,-1.0 -2,-0.3 2,-0.5 -0.865 56.9 -89.0-146.8-177.9 68.8 -6.5 -1.3 74 171 A R 0 0 174 -72,-0.3 -72,-0.2 -2,-0.3 -20,-0.0 -0.176 360.0 360.0 -91.8 45.3 71.8 -8.7 -0.5 75 172 A A 0 0 81 -2,-0.5 -1,-0.2 -72,-0.1 -72,-0.2 0.280 360.0 360.0 55.3 360.0 74.1 -6.7 -2.8