==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=3-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER GLYCOPROTEIN 07-NOV-00 1HD4 . COMPND 2 MOLECULE: CHORIONIC GONADOTROPIN; . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR P.J.A.ERBEL,Y.KARIMI-NEJAD,J.A.VAN KUIK,R.BOELENS, . 92 1 5 5 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 8114.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 30 32.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 8 8.7 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 1 1.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 1 1.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 14 15.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 3 3.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 2 2.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A A 0 0 135 0, 0.0 2,-0.1 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 124.2 -6.2 -20.3 -19.6 2 2 A P + 0 0 132 0, 0.0 3,-0.1 0, 0.0 2,-0.0 -0.398 360.0 127.3 -79.9 157.9 -3.7 -17.5 -18.6 3 3 A D - 0 0 129 1,-0.4 2,-0.2 -2,-0.1 0, 0.0 -0.145 61.9 -12.1-165.6 -90.6 -4.5 -13.8 -18.6 4 4 A V - 0 0 105 -2,-0.0 -1,-0.4 3,-0.0 3,-0.1 -0.469 54.5-114.1-119.9-168.4 -3.9 -11.5 -15.6 5 5 A Q - 0 0 169 1,-0.4 0, 0.0 -2,-0.2 0, 0.0 0.060 46.1-133.9-119.1 22.5 -3.1 -11.8 -11.9 6 6 A D - 0 0 147 1,-0.1 -1,-0.4 2,-0.0 0, 0.0 -0.283 46.8 -55.6 60.4-143.3 -6.3 -10.4 -10.5 7 7 A a - 0 0 59 -3,-0.1 26,-0.3 1,-0.1 -1,-0.1 -0.797 55.0-172.8-139.7 95.3 -5.9 -7.8 -7.7 8 8 A P - 0 0 67 0, 0.0 25,-0.9 0, 0.0 2,-0.3 0.654 42.3 -62.6 -56.3-135.3 -3.8 -8.8 -4.6 9 9 A E - 0 0 99 23,-0.2 2,-0.9 21,-0.0 23,-0.4 -0.858 56.9 -82.4-122.5 157.5 -3.7 -6.5 -1.6 10 10 A b S S+ 0 0 13 -2,-0.3 74,-0.2 19,-0.2 2,-0.1 -0.412 75.8 132.9 -60.9 101.3 -2.4 -3.0 -1.1 11 11 A T - 0 0 74 -2,-0.9 18,-2.2 16,-0.1 2,-0.4 -0.280 58.8 -59.9-126.3-148.5 1.3 -3.6 -0.6 12 12 A L - 0 0 46 16,-0.4 2,-0.6 -2,-0.1 16,-0.1 -0.903 27.6-151.1-111.2 134.7 4.6 -2.1 -1.9 13 13 A Q - 0 0 91 -2,-0.4 13,-0.1 16,-0.0 12,-0.0 -0.341 36.7-127.1 -98.3 51.3 5.6 -2.1 -5.6 14 14 A E - 0 0 103 -2,-0.6 12,-0.5 1,-0.2 11,-0.2 0.518 36.2 -89.2 0.3 117.9 9.2 -2.2 -4.9 15 15 A N > - 0 0 8 10,-0.2 4,-1.3 1,-0.2 -1,-0.2 -0.193 32.0-156.1 -46.9 115.1 10.8 0.6 -6.8 16 16 A P T 4 S+ 0 0 118 0, 0.0 -1,-0.2 0, 0.0 -2,-0.1 0.216 94.4 40.7 -80.3 16.4 11.7 -0.6 -10.3 17 17 A F T 4 S+ 0 0 106 3,-0.0 -2,-0.1 54,-0.0 -3,-0.0 0.613 116.3 40.6-125.0 -55.1 14.3 2.1 -10.4 18 18 A F T 4 S+ 0 0 50 8,-0.1 2,-2.3 1,-0.1 5,-0.2 0.654 80.5 119.9 -73.7 -16.2 15.9 2.3 -7.0 19 19 A S < + 0 0 53 -4,-1.3 -1,-0.1 5,-0.2 7,-0.0 -0.238 45.4 159.7 -53.0 79.0 15.9 -1.5 -7.0 20 20 A Q B > -A 23 0A 112 3,-3.6 2,-4.1 -2,-2.3 3,-2.2 -0.587 59.5 -76.8-104.0 167.6 19.7 -1.6 -6.7 21 21 A P T 3 S+ 0 0 133 0, 0.0 -2,-0.1 0, 0.0 -1,-0.1 -0.230 131.6 11.4 -61.2 63.1 22.1 -4.4 -5.5 22 22 A G T 3 S+ 0 0 73 -2,-4.1 -3,-0.1 0, 0.0 0, 0.0 0.260 122.5 66.0 147.9 -8.7 21.2 -3.6 -1.9 23 23 A A B < +A 20 0A 24 -3,-2.2 -3,-3.6 -5,-0.2 2,-0.7 -0.823 45.9 176.8-147.7 102.9 18.2 -1.3 -2.1 24 24 A P - 0 0 66 0, 0.0 -5,-0.2 0, 0.0 -9,-0.2 -0.582 23.1-167.9-104.1 65.3 14.9 -2.4 -3.4 25 25 A I - 0 0 5 -2,-0.7 2,-0.2 -11,-0.2 -10,-0.2 0.380 5.0-162.5 -42.2-177.8 12.8 0.7 -2.9 26 26 A L - 0 0 21 -12,-0.5 52,-0.2 50,-0.1 -1,-0.1 -0.656 27.0-153.9-148.2-155.8 9.0 0.8 -3.2 27 27 A Q - 0 0 104 -2,-0.2 50,-0.1 50,-0.1 -16,-0.1 0.139 51.5 -95.9 159.9 67.2 5.8 2.7 -3.6 28 28 A c - 0 0 16 48,-0.3 -16,-0.4 -16,-0.1 -18,-0.1 0.575 31.9-142.4 4.8 118.3 2.7 1.0 -2.1 29 29 A M - 0 0 63 -18,-2.2 -19,-0.2 -20,-0.1 -17,-0.1 0.980 24.0-136.4 -58.9 -85.0 0.9 -0.9 -4.8 30 30 A G + 0 0 36 -21,-0.3 -20,-0.1 29,-0.0 -18,-0.0 0.601 58.1 114.1 120.7 82.9 -2.8 -0.4 -4.0 31 31 A a + 0 0 27 -24,-0.0 2,-2.9 -20,-0.0 3,-0.1 -0.033 18.1 160.7-168.8 47.6 -5.3 -3.2 -4.1 32 32 A d - 0 0 10 -23,-0.4 3,-0.5 1,-0.2 25,-0.2 -0.258 61.6-104.4 -73.5 55.0 -6.6 -4.0 -0.6 33 33 A F - 0 0 102 -2,-2.9 24,-0.4 -25,-0.9 -1,-0.2 0.054 35.0 -92.4 50.3-166.9 -9.6 -5.7 -2.1 34 34 A S + 0 0 69 22,-0.2 -1,-0.2 -3,-0.1 2,-0.1 -0.367 50.0 176.1-140.9 57.4 -13.0 -3.9 -2.1 35 35 A R - 0 0 158 -3,-0.5 2,-0.4 22,-0.1 22,-0.1 -0.357 14.5-159.8 -65.7 142.2 -14.8 -5.0 1.1 36 36 A A + 0 0 54 1,-0.2 -1,-0.1 -2,-0.1 20,-0.0 -0.726 20.2 165.2-128.2 83.2 -18.1 -3.4 1.8 37 37 A Y S S+ 0 0 194 -2,-0.4 -1,-0.2 2,-0.1 -2,-0.0 0.995 71.3 13.6 -58.4 -72.9 -19.1 -3.6 5.4 38 38 A P S S- 0 0 95 0, 0.0 3,-0.0 0, 0.0 0, 0.0 0.057 116.8 -47.4 -86.6-159.3 -21.9 -1.0 5.5 39 39 A T - 0 0 114 1,-0.1 -2,-0.1 -2,-0.0 -3,-0.0 -0.648 68.6-109.0 -78.6 117.7 -23.7 0.7 2.7 40 40 A P - 0 0 99 0, 0.0 2,-0.2 0, 0.0 -1,-0.1 -0.187 42.1-165.1 -48.4 125.4 -21.2 1.9 0.1 41 41 A L - 0 0 154 14,-0.1 2,-0.2 -3,-0.0 0, 0.0 -0.671 9.9-179.4-112.4 168.0 -21.0 5.7 0.2 42 42 A R + 0 0 231 -2,-0.2 13,-0.0 1,-0.1 12,-0.0 -0.752 33.1 109.0-147.4-166.6 -19.5 8.3 -2.2 43 43 A S + 0 0 118 -2,-0.2 -1,-0.1 2,-0.1 3,-0.1 0.919 40.9 122.4 87.4 80.0 -18.9 12.0 -2.7 44 44 A K S S- 0 0 137 0, 0.0 2,-2.0 0, 0.0 -1,-0.0 -0.022 82.0 -97.3-160.1 38.4 -15.3 12.9 -2.3 45 45 A K S S+ 0 0 189 1,-0.1 -2,-0.1 2,-0.0 -3,-0.0 -0.532 87.5 119.4 78.8 -78.5 -14.1 14.5 -5.6 46 46 A T + 0 0 89 -2,-2.0 -1,-0.1 1,-0.2 8,-0.0 0.207 28.3 163.3 20.5 -91.8 -12.6 11.3 -7.2 47 47 A M + 0 0 178 1,-0.2 2,-0.2 7,-0.0 -1,-0.2 0.909 25.3 153.2 53.5 46.5 -14.9 11.3 -10.2 48 48 A L - 0 0 66 1,-0.2 -1,-0.2 5,-0.1 5,-0.1 -0.669 60.0 -55.6-104.6 160.9 -12.6 8.9 -12.0 49 49 A V - 0 0 113 -2,-0.2 2,-3.5 1,-0.2 -1,-0.2 -0.033 53.8-135.8 -35.2 107.3 -13.3 6.3 -14.7 50 50 A Q + 0 0 125 1,-0.1 2,-0.5 2,-0.1 -1,-0.2 -0.243 63.2 129.6 -69.7 56.8 -16.0 4.3 -13.0 51 51 A K S S- 0 0 160 -2,-3.5 -1,-0.1 1,-0.1 -2,-0.1 -0.597 97.2 -53.5-113.3 68.9 -14.3 1.1 -14.2 52 52 A N S S+ 0 0 149 -2,-0.5 -2,-0.1 1,-0.1 -1,-0.1 0.887 120.0 99.8 66.3 39.6 -14.1 -1.0 -11.0 53 53 A V + 0 0 74 -5,-0.1 -5,-0.1 -4,-0.1 -3,-0.1 0.037 68.8 58.8-141.6 25.1 -12.3 1.9 -9.2 54 54 A T S S+ 0 0 70 -4,-0.1 -4,-0.1 -7,-0.1 -7,-0.0 0.608 94.0 58.7-124.5 -33.1 -15.1 3.5 -7.2 55 55 A S S S+ 0 0 77 -15,-0.0 -14,-0.1 2,-0.0 -2,-0.0 0.961 81.8 97.7 -65.5 -53.8 -16.4 0.7 -4.9 56 56 A E - 0 0 78 1,-0.1 2,-0.2 -16,-0.1 -22,-0.2 0.163 57.1-169.5 -32.6 153.8 -13.1 -0.0 -3.2 57 57 A S + 0 0 60 -24,-0.4 -25,-0.1 -25,-0.2 -1,-0.1 -0.618 37.5 51.5-135.5-165.8 -12.7 1.7 0.2 58 58 A T - 0 0 52 -2,-0.2 2,-0.3 1,-0.1 26,-0.1 0.183 67.1-119.6 55.9 175.7 -10.0 2.4 2.9 59 59 A e - 0 0 44 24,-0.1 26,-4.2 -49,-0.0 2,-0.5 -0.975 9.9-147.9-155.1 138.1 -6.7 4.0 2.1 60 60 A b B +B 84 0B 34 24,-0.3 2,-0.2 -2,-0.3 24,-0.2 -0.936 20.0 166.8-113.7 120.6 -3.0 2.9 2.4 61 61 A V - 0 0 106 22,-0.9 4,-0.1 -2,-0.5 23,-0.0 -0.637 61.9 -89.3-130.2 72.6 -0.4 5.6 3.0 62 62 A A - 0 0 3 -2,-0.2 3,-0.4 1,-0.2 20,-0.4 0.722 35.2-145.7 18.0 95.1 2.8 3.7 4.1 63 63 A K S S+ 0 0 141 18,-3.2 2,-0.3 1,-0.3 19,-0.2 0.840 92.8 16.3 -50.3 -32.8 2.2 3.6 7.8 64 64 A S B S-C 81 0C 51 17,-0.5 16,-4.5 13,-0.1 17,-0.6 -0.853 83.0-167.8-147.4 105.1 6.0 3.9 7.9 65 65 A Y - 0 0 148 -3,-0.4 13,-0.3 -2,-0.3 14,-0.3 -0.480 20.7-164.2 -91.0 164.6 7.9 5.1 4.9 66 66 A N - 0 0 90 11,-0.5 12,-0.5 10,-0.3 11,-0.1 -0.098 31.4-155.6-135.7 29.0 11.7 5.1 4.3 67 67 A R - 0 0 126 1,-0.1 8,-0.1 8,-0.1 -42,-0.0 0.432 19.3-177.0 -9.9 132.0 11.5 7.5 1.5 68 68 A V - 0 0 26 6,-0.2 -1,-0.1 -42,-0.1 6,-0.1 -0.353 21.1-146.0-139.4 52.2 14.3 7.3 -1.0 69 69 A T - 0 0 72 4,-0.1 6,-0.3 1,-0.1 2,-0.2 0.153 29.4-179.5 -24.6 118.3 13.7 10.1 -3.5 70 70 A V B >> +D 74 0D 13 4,-3.5 3,-3.7 2,-0.0 4,-3.6 -0.430 37.0 6.5-115.9-168.9 14.9 8.8 -6.8 71 71 A M T 34 S- 0 0 91 1,-0.3 -54,-0.0 2,-0.3 0, 0.0 0.127 134.3 -12.8 30.4-137.6 15.2 9.9 -10.4 72 72 A G T 34 S- 0 0 89 1,-0.2 -1,-0.3 0, 0.0 -3,-0.1 0.277 138.6 -46.5 -71.6 14.8 14.2 13.5 -10.9 73 73 A G T <4 S+ 0 0 35 -3,-3.7 2,-0.5 1,-0.1 -2,-0.3 0.640 78.4 176.9 123.9 36.8 12.8 13.3 -7.4 74 74 A F B < -D 70 0D 112 -4,-3.6 -4,-3.5 -6,-0.1 2,-0.5 -0.599 16.0-153.1 -75.2 118.3 10.8 10.1 -7.2 75 75 A K + 0 0 128 -2,-0.5 -8,-0.1 -6,-0.3 -1,-0.0 -0.829 28.0 163.9 -98.7 124.1 9.4 9.6 -3.7 76 76 A V > - 0 0 4 -2,-0.5 3,-1.7 -10,-0.0 -48,-0.3 0.139 40.6-139.4-117.7 11.7 8.7 6.0 -2.6 77 77 A E T 3 - 0 0 56 1,-0.3 -11,-0.5 -12,-0.2 3,-0.3 0.818 42.7-110.8 25.8 40.5 8.4 6.9 1.0 78 78 A N T 3 - 0 0 23 -12,-0.5 -1,-0.3 -13,-0.3 -51,-0.0 0.516 41.7-126.0 -3.0 69.5 10.3 3.6 0.9 79 79 A H < + 0 0 18 -3,-1.7 -14,-0.3 -14,-0.3 -1,-0.2 -0.029 43.3 170.2 -39.5 120.0 7.3 2.1 2.5 80 80 A T S S+ 0 0 78 -16,-4.5 -15,-0.2 -3,-0.3 -1,-0.2 0.411 78.1 14.7-112.5 -5.6 8.2 0.3 5.6 81 81 A A B -C 64 0C 32 -17,-0.6 -18,-3.2 -70,-0.0 -17,-0.5 -0.384 69.1-166.5-171.4 83.9 4.6 -0.3 6.8 82 82 A c - 0 0 34 -20,-0.4 2,-0.5 -19,-0.2 -22,-0.1 -0.635 7.6-172.1 -80.5 128.0 1.7 0.2 4.4 83 83 A H - 0 0 63 -2,-0.4 2,-0.9 2,-0.1 -22,-0.9 -0.927 11.2-156.6-125.8 108.6 -1.7 0.4 6.1 84 84 A d B +B 60 0B 32 -2,-0.5 -24,-0.3 -24,-0.2 2,-0.3 -0.726 64.8 37.9 -86.7 104.8 -4.9 0.4 4.0 85 85 A S + 0 0 51 -26,-4.2 -24,-0.1 -2,-0.9 -2,-0.1 -0.976 63.1 87.3 153.5-160.7 -7.6 2.0 6.1 86 86 A T + 0 0 88 -2,-0.3 -1,-0.1 1,-0.2 -3,-0.0 0.870 47.0 169.0 34.3 56.2 -8.1 4.7 8.6 87 87 A e + 0 0 77 -3,-0.1 2,-0.3 -27,-0.0 -1,-0.2 0.215 63.9 0.1 -80.6 16.3 -8.7 7.2 5.8 88 88 A Y S S- 0 0 170 0, 0.0 2,-0.3 0, 0.0 0, 0.0 -0.938 83.1 -84.2-174.4-166.6 -9.9 9.7 8.3 89 89 A Y - 0 0 191 -2,-0.3 2,-0.2 2,-0.1 -2,-0.0 -0.925 28.1-154.7-126.1 151.0 -10.5 10.5 12.0 90 90 A H + 0 0 141 -2,-0.3 2,-1.2 2,-0.1 0, 0.0 -0.437 68.1 16.1-111.0-173.9 -13.5 9.8 14.3 91 91 A K 0 0 205 1,-0.2 -2,-0.1 -2,-0.2 0, 0.0 -0.261 360.0 360.0 51.8 -89.0 -14.8 11.3 17.5 92 92 A S 0 0 143 -2,-1.2 -1,-0.2 0, 0.0 -2,-0.1 0.381 360.0 360.0 7.0 360.0 -12.8 14.6 17.1