==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=3-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER TRANSCRIPTION/DNA 16-SEP-91 1HDD . COMPND 2 MOLECULE: DNA (5'- . SOURCE 2 SYNTHETIC: YES; . AUTHOR C.R.KISSINGER,B.LIU,E.MARTIN-BLANCO,T.B.KORNBERG C.O.PABO . 114 2 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 9170.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 85 74.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 5 4.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 16 14.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 62 54.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 1 0.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 1 3 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 3 C R 0 0 276 0, 0.0 2,-1.1 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 149.5 29.1 11.8 45.1 2 4 C P - 0 0 124 0, 0.0 2,-0.7 0, 0.0 0, 0.0 -0.731 360.0-167.9 -96.5 82.4 29.0 12.0 41.3 3 5 C R - 0 0 222 -2,-1.1 0, 0.0 1,-0.1 0, 0.0 -0.651 22.0-127.7 -75.8 107.1 28.8 15.8 40.8 4 6 C T - 0 0 61 -2,-0.7 2,-0.5 1,-0.1 -1,-0.1 -0.258 15.1-143.8 -57.2 146.1 27.9 16.3 37.0 5 7 C A - 0 0 87 0, 0.0 2,-0.4 0, 0.0 -1,-0.1 -0.931 13.5-140.7-111.8 125.6 30.2 18.6 35.1 6 8 C F - 0 0 57 -2,-0.5 2,-0.2 4,-0.0 0, 0.0 -0.718 14.3-120.0 -95.9 143.8 28.5 20.8 32.5 7 9 C S >> - 0 0 50 -2,-0.4 3,-2.8 1,-0.1 4,-2.4 -0.514 22.2-119.5 -76.9 143.6 29.9 21.5 29.1 8 10 C S T 34 S+ 0 0 91 1,-0.3 4,-0.2 -2,-0.2 -1,-0.1 0.722 119.0 50.6 -49.6 -26.1 30.6 25.1 28.1 9 11 C E T 3> S+ 0 0 157 2,-0.1 4,-0.8 3,-0.1 -1,-0.3 0.465 109.2 48.8 -91.6 -7.8 28.2 24.4 25.3 10 12 C Q H X> S+ 0 0 33 -3,-2.8 4,-2.5 2,-0.2 3,-0.6 0.869 105.9 54.6 -91.9 -54.0 25.5 23.0 27.6 11 13 C L H 3X S+ 0 0 61 -4,-2.4 4,-1.7 1,-0.3 5,-0.2 0.775 107.2 57.9 -49.9 -24.4 25.6 25.8 30.1 12 14 C A H 3> S+ 0 0 51 -5,-0.4 4,-2.8 -4,-0.2 -1,-0.3 0.956 108.2 38.1 -76.1 -48.4 25.0 28.0 27.2 13 15 C R H X S+ 0 0 0 -4,-2.5 4,-1.6 2,-0.2 3,-1.5 0.993 112.1 41.7 -65.9 -63.5 20.5 26.0 29.3 15 17 C K H >X S+ 0 0 109 -4,-1.7 4,-1.4 1,-0.3 3,-1.0 0.917 114.6 51.4 -45.5 -55.6 21.1 29.7 30.1 16 18 C R H 3X S+ 0 0 50 -4,-2.8 4,-1.1 1,-0.3 -1,-0.3 0.810 111.3 49.9 -52.9 -30.6 19.7 30.8 26.9 17 19 C E H - 0 0 79 -2,-0.3 4,-2.9 1,-0.1 5,-0.2 -0.538 28.9-113.0 -97.7 171.4 7.6 22.0 30.4 26 28 C E H > S+ 0 0 119 2,-0.2 4,-3.2 3,-0.2 -1,-0.1 0.997 120.1 48.7 -67.1 -51.3 7.8 18.3 30.0 27 29 C R H > S+ 0 0 182 1,-0.3 4,-3.0 2,-0.2 5,-0.2 0.924 118.9 40.6 -44.7 -54.0 8.0 18.6 26.2 28 30 C R H > S+ 0 0 85 1,-0.3 4,-1.7 2,-0.2 -1,-0.3 0.859 112.5 54.0 -67.4 -34.8 10.7 21.2 26.7 29 31 C R H X S+ 0 0 74 -4,-2.9 4,-0.8 2,-0.2 -1,-0.3 0.881 113.4 46.0 -68.5 -28.2 12.2 19.3 29.5 30 32 C Q H >X S+ 0 0 81 -4,-3.2 3,-1.4 2,-0.2 4,-1.1 0.986 107.7 51.3 -73.8 -62.5 12.3 16.4 27.1 31 33 C Q H 3X S+ 0 0 59 -4,-3.0 4,-1.7 1,-0.3 5,-0.3 0.842 105.6 57.2 -41.0 -49.9 13.7 18.0 24.0 32 34 C L H 3X S+ 0 0 0 -4,-1.7 4,-3.3 1,-0.2 5,-0.3 0.867 103.3 57.4 -51.8 -39.6 16.6 19.5 25.9 33 35 C S H S+ 0 0 18 -3,-1.4 4,-2.2 -4,-0.8 5,-1.1 0.948 106.7 45.3 -52.2 -62.9 17.5 16.0 26.9 34 36 C S H <5S+ 0 0 103 -4,-1.1 3,-0.4 1,-0.2 -2,-0.2 0.932 120.0 40.6 -38.7 -74.6 17.8 14.7 23.4 35 37 C E H <5S+ 0 0 111 -4,-1.7 -1,-0.2 1,-0.3 -2,-0.2 0.794 123.1 34.6 -45.9 -57.3 19.8 17.6 22.2 36 38 C L H <5S- 0 0 28 -4,-3.3 -1,-0.3 -5,-0.3 -2,-0.2 0.632 100.4-129.7 -83.8 -10.6 22.1 18.2 25.1 37 39 C G T <5 + 0 0 60 -4,-2.2 2,-0.3 -3,-0.4 -3,-0.2 0.950 65.0 127.1 59.2 52.2 22.4 14.6 25.9 38 40 C L < - 0 0 15 -5,-1.1 -1,-0.3 -6,-0.2 2,-0.3 -0.893 63.7 -98.5-132.3 157.0 21.6 15.1 29.5 39 41 C N >> - 0 0 106 -2,-0.3 3,-2.4 1,-0.1 4,-1.5 -0.575 27.8-117.1 -84.8 140.1 18.9 13.5 31.6 40 42 C E T 34 S+ 0 0 63 1,-0.3 4,-0.5 -2,-0.3 -1,-0.1 0.596 111.7 60.3 -51.2 -7.5 15.6 15.1 32.3 41 43 C A T 3> S+ 0 0 61 2,-0.2 4,-2.0 3,-0.1 -1,-0.3 0.788 102.1 46.8 -96.9 -22.9 16.5 15.1 35.9 42 44 C Q H <> S+ 0 0 37 -3,-2.4 4,-1.7 2,-0.2 -2,-0.2 0.768 110.7 51.9 -84.4 -26.3 19.5 17.2 35.8 43 45 C I H X S+ 0 0 0 -4,-1.5 4,-1.9 2,-0.2 5,-0.2 0.836 108.6 56.8 -73.5 -29.3 17.9 19.7 33.6 44 46 C K H > S+ 0 0 97 -4,-0.5 4,-1.8 -5,-0.4 -2,-0.2 1.000 110.0 39.1 -62.8 -66.5 15.3 19.7 36.2 45 47 C I H X S+ 0 0 74 -4,-2.0 4,-2.7 1,-0.2 -1,-0.2 0.800 109.6 63.2 -56.6 -29.9 17.4 20.5 39.1 46 48 C W H X S+ 0 0 37 -4,-1.7 4,-2.5 1,-0.2 -1,-0.2 0.975 105.9 43.4 -58.7 -56.9 19.5 23.0 37.1 47 49 C F H X S+ 0 0 2 -4,-1.9 4,-1.8 2,-0.2 5,-0.2 0.870 113.7 52.2 -56.3 -39.7 16.5 25.2 36.5 48 50 C Q H X S+ 0 0 76 -4,-1.8 4,-1.0 1,-0.2 -1,-0.2 0.954 112.9 45.1 -59.0 -51.7 15.5 24.9 40.1 49 51 C N H X S+ 0 0 106 -4,-2.7 4,-1.6 2,-0.2 -2,-0.2 0.786 109.1 56.0 -64.0 -33.6 18.9 25.9 41.2 50 52 C K H >X S+ 0 0 69 -4,-2.5 4,-1.8 1,-0.2 3,-1.5 0.996 106.4 48.8 -61.3 -66.3 19.1 28.7 38.8 51 53 C R H 3X S+ 0 0 50 -4,-1.8 4,-1.7 1,-0.3 -1,-0.2 0.725 107.6 62.3 -38.2 -30.1 15.9 30.4 40.1 52 54 C A H 3X S+ 0 0 44 -4,-1.0 4,-2.5 -5,-0.2 -1,-0.3 0.942 105.2 39.1 -70.0 -48.7 17.5 29.9 43.5 53 55 C K H << S+ 0 0 137 -4,-1.6 -2,-0.2 -3,-1.5 -1,-0.2 0.758 111.0 59.8 -75.0 -20.1 20.5 32.0 43.1 54 56 C I H >< S+ 0 0 75 -4,-1.8 3,-0.7 3,-0.2 -1,-0.2 0.932 108.0 46.1 -69.0 -42.2 18.6 34.6 41.3 55 57 C K H 3< S+ 0 0 162 -4,-1.7 -2,-0.2 2,-0.3 -1,-0.2 0.967 117.6 41.3 -63.7 -53.7 16.4 34.9 44.3 56 58 C K T 3< 0 0 164 -4,-2.5 -1,-0.3 1,-0.2 -2,-0.2 0.402 360.0 360.0 -75.6 8.4 19.3 35.1 46.7 57 59 C S < 0 0 123 -3,-0.7 -2,-0.3 -5,-0.2 -1,-0.2 0.454 360.0 360.0-142.2 360.0 21.0 37.3 44.2 58 !* 0 0 0 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 360.0 0.0 0.0 0.0 59 3 D R 0 0 120 0, 0.0 3,-0.1 0, 0.0 2,-0.0 0.000 360.0 360.0 360.0 125.7 2.3 2.9 53.6 60 4 D P - 0 0 103 0, 0.0 0, 0.0 0, 0.0 0, 0.0 -0.308 360.0-103.0 -59.5 136.6 -0.6 0.6 54.2 61 5 D R - 0 0 244 1,-0.1 2,-0.2 -2,-0.0 0, 0.0 -0.350 53.9-174.7 -57.1 131.3 -4.1 2.0 54.1 62 6 D T - 0 0 74 -3,-0.1 2,-0.4 38,-0.1 -1,-0.1 -0.658 21.1-131.6-125.6-175.6 -5.0 2.4 57.8 63 7 D A - 0 0 85 -2,-0.2 2,-0.2 0, 0.0 -2,-0.0 -0.972 17.4-133.7-146.7 128.7 -8.0 3.3 59.9 64 8 D F - 0 0 59 -2,-0.4 2,-0.1 1,-0.1 32,-0.0 -0.503 18.3-122.5 -83.7 142.1 -8.2 5.7 62.8 65 9 D S >> - 0 0 45 -2,-0.2 4,-3.3 1,-0.1 3,-0.8 -0.427 25.6-117.2 -77.0 163.3 -9.9 5.0 66.0 66 10 D S H 3> S+ 0 0 105 1,-0.3 4,-0.9 2,-0.2 -1,-0.1 0.631 118.3 61.7 -72.4 -13.6 -12.5 7.5 67.0 67 11 D E H 34 S+ 0 0 176 2,-0.2 -1,-0.3 1,-0.1 -3,-0.0 0.750 114.5 33.9 -77.9 -29.2 -10.4 8.2 69.9 68 12 D Q H X> S+ 0 0 35 -3,-0.8 3,-2.0 2,-0.1 4,-1.8 0.788 111.4 59.1 -93.2 -48.1 -7.7 9.4 67.4 69 13 D L H 3X S+ 0 0 57 -4,-3.3 4,-1.5 1,-0.3 -3,-0.2 0.842 107.9 48.8 -55.9 -29.6 -9.8 10.8 64.7 70 14 D A H 3< S+ 0 0 61 -4,-0.9 -1,-0.3 -5,-0.2 -2,-0.1 0.499 108.1 52.0 -91.5 -1.2 -11.3 13.2 67.2 71 15 D R H <> S+ 0 0 61 -3,-2.0 4,-0.8 2,-0.1 -2,-0.2 0.712 108.0 52.2 -99.0 -21.3 -8.1 14.3 68.5 72 16 D L H >X S+ 0 0 0 -4,-1.8 4,-2.3 1,-0.2 3,-0.6 0.915 109.8 50.1 -73.6 -45.5 -6.8 15.0 65.1 73 17 D K H 3< S+ 0 0 93 -4,-1.5 -1,-0.2 1,-0.3 -2,-0.1 0.659 107.1 53.6 -69.7 -17.1 -9.8 17.1 64.4 74 18 D R H 34 S+ 0 0 51 2,-0.1 4,-0.4 1,-0.1 -1,-0.3 0.754 112.1 44.5 -88.9 -20.8 -9.4 19.0 67.5 75 19 D E H XX S+ 0 0 23 -4,-0.8 4,-1.4 -3,-0.6 3,-0.9 0.814 106.9 58.2 -85.3 -34.9 -5.8 19.9 66.6 76 20 D F T 3< S+ 0 0 11 -4,-2.3 -1,-0.2 1,-0.3 -3,-0.1 0.357 103.0 59.2 -74.2 4.4 -6.7 20.7 63.1 77 21 D N T 34 S+ 0 0 115 -5,-0.2 -1,-0.3 -3,-0.2 -2,-0.2 0.719 102.4 47.5-105.6 -24.1 -9.0 23.2 64.6 78 22 D E T <4 S- 0 0 162 -3,-0.9 2,-0.3 -4,-0.4 -2,-0.2 0.747 134.9 -11.1 -83.6 -31.1 -6.3 25.1 66.5 79 23 D N < - 0 0 100 -4,-1.4 -1,-0.4 1,-0.0 -2,-0.1 -0.854 53.2-142.0-170.2 131.4 -4.1 25.3 63.5 80 24 D R S S+ 0 0 91 -2,-0.3 2,-0.6 -3,-0.2 29,-0.2 0.643 81.8 75.2 -77.7 -11.7 -4.1 23.7 60.1 81 25 D Y - 0 0 134 28,-0.0 2,-0.1 25,-0.0 -1,-0.1 -0.835 69.9-144.9-106.1 123.9 -0.3 23.3 59.8 82 26 D L - 0 0 33 -2,-0.6 2,-0.3 20,-0.1 -2,-0.0 -0.449 9.6-148.0 -82.2 162.2 1.6 20.7 61.7 83 27 D T > - 0 0 90 -2,-0.1 4,-2.0 1,-0.1 5,-0.2 -0.853 25.1-109.8-125.1 155.1 5.1 21.2 63.1 84 28 D E H > S+ 0 0 131 -2,-0.3 4,-2.3 2,-0.2 5,-0.1 0.916 116.2 41.8 -52.8 -55.2 7.8 18.7 63.5 85 29 D R H > S+ 0 0 164 1,-0.2 4,-2.9 2,-0.2 -1,-0.2 0.883 117.8 49.4 -64.5 -32.3 7.9 18.5 67.2 86 30 D R H > S+ 0 0 77 2,-0.2 4,-1.7 1,-0.2 -2,-0.2 0.768 105.8 54.6 -80.0 -21.9 4.2 18.5 67.3 87 31 D R H X S+ 0 0 59 -4,-2.0 4,-1.1 2,-0.2 -2,-0.2 0.942 113.0 46.5 -70.9 -43.5 3.9 15.8 64.6 88 32 D Q H >X S+ 0 0 81 -4,-2.3 3,-2.5 2,-0.2 4,-1.4 0.990 107.6 53.8 -54.0 -75.4 6.0 13.9 67.0 89 33 D Q H 3X S+ 0 0 79 -4,-2.9 4,-0.7 1,-0.3 -1,-0.2 0.736 111.1 47.9 -28.5 -51.2 4.0 14.7 70.1 90 34 D L H 3X S+ 0 0 0 -4,-1.7 4,-3.1 1,-0.2 6,-0.5 0.726 106.3 56.9 -68.6 -29.1 0.8 13.4 68.5 91 35 D S H > - 0 0 100 1,-0.2 3,-3.5 -2,-0.1 4,-1.3 -0.888 27.3-126.6-103.1 130.0 2.7 7.0 62.7 98 42 D E H >> S+ 0 0 65 -2,-0.5 4,-3.1 1,-0.3 3,-1.0 0.888 110.1 54.3 -37.3 -58.1 4.0 10.5 61.9 99 43 D A H 3> S+ 0 0 47 1,-0.3 4,-0.9 2,-0.2 -1,-0.3 0.689 106.0 53.0 -58.7 -15.1 3.6 10.0 58.3 100 44 D Q H <> S+ 0 0 35 -3,-3.5 4,-1.2 2,-0.2 -1,-0.3 0.821 110.7 46.6 -84.8 -31.4 0.0 9.1 58.7 101 45 D I H < S+ 0 0 63 -4,-3.1 3,-1.7 1,-0.2 -2,-0.2 0.867 105.0 61.7 -45.1 -44.5 -11.6 22.2 54.0 113 57 D K H 3< S+ 0 0 118 -4,-2.6 2,-0.7 -5,-0.3 -1,-0.2 0.938 84.0 74.7 -46.9 -67.6 -10.2 24.5 51.3 114 58 D K T 3< 0 0 197 -4,-1.3 -1,-0.3 1,-0.1 -2,-0.2 0.451 360.0 360.0 -23.5 -20.0 -12.8 23.4 48.7 115 59 D S < 0 0 148 -3,-1.7 -1,-0.1 -2,-0.7 -3,-0.0 -0.522 360.0 360.0 -72.3 360.0 -15.6 25.5 50.6