==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=3-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER DNA-BINDING PROTEIN 08-MAR-94 1HDP . COMPND 2 MOLECULE: OCT-2 POU HOMEODOMAIN; . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR M.SIVARAJA,M.C.BOTFIELD,M.MUELLER,A.JANCSO,M.A.WEISS . 62 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 4664.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 39 62.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 4 6.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 6 9.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 28 45.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 1 1.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 1 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A R 0 0 115 0, 0.0 4,-0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 -74.8 -18.2 4.3 -3.8 2 2 A R + 0 0 76 2,-0.1 2,-0.3 3,-0.0 5,-0.0 -0.731 360.0 174.5 -16.2 -60.8 -17.2 5.5 -3.2 3 3 A K + 0 0 34 3,-0.0 2,-0.1 0, 0.0 0, 0.0 -0.030 14.0 139.0 53.7 63.3 -15.9 4.4 -2.3 4 4 A K - 0 0 50 -2,-0.3 2,-0.7 4,-0.0 3,-0.2 -0.457 21.9-173.6-132.9 60.2 -14.5 5.1 -1.5 5 5 A R - 0 0 98 1,-0.2 3,-0.2 -2,-0.1 4,-0.1 -0.476 10.9-155.5 -71.5 109.3 -13.3 4.7 0.6 6 6 A T + 0 0 57 -2,-0.7 -1,-0.2 1,-0.3 -3,-0.0 0.224 34.0 125.0 -56.9-177.9 -11.7 5.8 1.5 7 7 A S + 0 0 7 -3,-0.2 2,-2.1 1,-0.0 -1,-0.3 0.247 10.8 121.7 142.4 41.4 -10.6 5.0 2.6 8 8 A I - 0 0 95 -3,-0.2 2,-0.1 1,-0.1 -2,-0.0 0.093 45.5-178.4-106.4-163.8 -8.1 4.4 3.3 9 9 A E - 0 0 99 -2,-2.1 -1,-0.1 1,-0.2 -2,-0.0 0.731 9.1 -98.6 178.2 -58.6 -7.4 5.7 6.2 10 10 A T >> + 0 0 28 -3,-0.1 4,-1.3 -2,-0.1 3,-0.9 0.101 69.7 83.2-125.1-142.3 -5.2 5.9 8.0 11 11 A N H 3> S+ 0 0 99 1,-0.3 4,-1.2 2,-0.2 3,-0.2 0.784 107.8 59.8 -49.1 -31.0 -3.0 5.8 10.3 12 12 A V H 3> S+ 0 0 22 1,-0.2 4,-2.8 2,-0.2 3,-0.5 0.948 92.7 58.4 -63.6 -47.6 -1.5 3.3 8.5 13 13 A R H <> S+ 0 0 114 -3,-0.9 4,-2.0 1,-0.3 -1,-0.2 0.817 99.3 63.2 -55.5 -33.8 -0.7 4.9 5.4 14 14 A F H X S+ 0 0 137 -4,-1.3 4,-0.9 1,-0.2 -1,-0.3 0.945 110.2 37.9 -57.5 -48.9 1.2 7.2 7.2 15 15 A A H X S+ 0 0 52 -4,-1.2 4,-1.2 -3,-0.5 -2,-0.3 0.799 113.1 58.1 -71.8 -29.1 3.4 4.5 8.3 16 16 A L H X S+ 0 0 3 -4,-2.8 4,-3.0 1,-0.2 5,-0.3 0.777 92.8 72.4 -72.5 -25.5 3.2 2.9 5.0 17 17 A E H X S+ 0 0 93 -4,-2.0 4,-1.2 -5,-0.3 -1,-0.2 0.968 104.2 33.4 -53.3 -60.3 4.4 5.9 3.5 18 18 A K H X S+ 0 0 127 -4,-0.9 4,-0.7 1,-0.2 -1,-0.2 0.783 119.9 54.0 -69.1 -27.1 7.9 5.6 4.6 19 19 A S H X S+ 0 0 48 -4,-1.2 4,-1.7 2,-0.2 -1,-0.2 0.813 97.2 64.3 -78.1 -31.1 7.7 2.0 4.4 20 20 A F H < S+ 0 0 13 -4,-3.0 3,-0.3 1,-0.2 -2,-0.2 0.967 104.1 43.2 -59.0 -56.5 6.6 1.8 1.0 21 21 A L H < S+ 0 0 113 -4,-1.2 3,-0.3 -5,-0.3 -1,-0.2 0.782 105.6 62.6 -64.3 -26.3 9.4 3.2 -0.4 22 22 A A H < S- 0 0 67 -4,-0.7 2,-0.4 1,-0.2 -1,-0.2 0.925 126.4 -8.3 -67.4 -43.2 11.8 1.5 1.5 23 23 A N < - 0 0 86 -4,-1.7 -1,-0.2 -3,-0.3 0, 0.0 -0.989 54.1-169.6-150.8 136.3 10.9 -1.5 0.4 24 24 A Q S S+ 0 0 62 -2,-0.4 -4,-0.1 -3,-0.3 -3,-0.1 0.382 70.7 77.8-115.8 15.2 8.3 -2.3 -1.4 25 25 A K - 0 0 139 -5,-0.0 -1,-0.2 5,-0.0 2,-0.2 -0.597 60.4-172.1-132.7 71.3 8.4 -5.8 -1.1 26 26 A P - 0 0 52 0, 0.0 2,-0.0 0, 0.0 -6,-0.0 -0.422 11.1-147.1 -67.6 134.2 7.2 -6.8 2.0 27 27 A T > - 0 0 88 -2,-0.2 4,-1.0 1,-0.1 5,-0.1 -0.108 30.8 -95.5 -86.5-172.1 7.6 -10.3 2.8 28 28 A S H > S+ 0 0 91 2,-0.2 4,-1.7 1,-0.2 5,-0.1 0.913 123.4 41.0 -73.9 -44.9 5.4 -12.3 4.8 29 29 A E H > S+ 0 0 120 1,-0.2 4,-2.6 2,-0.2 5,-0.2 0.875 107.2 62.1 -71.2 -40.0 7.1 -11.9 7.9 30 30 A E H > S+ 0 0 69 1,-0.2 4,-1.8 2,-0.2 -1,-0.2 0.849 107.8 44.4 -54.8 -37.2 7.7 -8.3 7.4 31 31 A I H X S+ 0 0 16 -4,-1.0 4,-2.2 2,-0.2 -1,-0.2 0.936 111.4 49.8 -74.5 -48.7 4.1 -7.6 7.4 32 32 A L H X S+ 0 0 90 -4,-1.7 4,-1.1 1,-0.2 -2,-0.2 0.838 109.9 54.8 -59.6 -32.2 3.1 -9.7 10.2 33 33 A L H >< S+ 0 0 86 -4,-2.6 3,-0.7 1,-0.2 4,-0.4 0.939 109.6 44.1 -65.9 -48.6 5.8 -8.1 12.1 34 34 A I H >< S+ 0 0 70 -4,-1.8 3,-0.8 1,-0.2 4,-0.5 0.757 106.2 64.5 -67.5 -24.1 4.5 -4.7 11.3 35 35 A A H ><>S+ 0 0 24 -4,-2.2 3,-1.0 1,-0.2 5,-0.8 0.820 93.2 61.5 -69.1 -31.2 1.1 -5.9 12.1 36 36 A E T <<5S+ 0 0 124 -4,-1.1 -1,-0.2 -3,-0.7 -2,-0.2 0.654 87.9 72.7 -70.2 -16.8 2.1 -6.5 15.6 37 37 A Q T < 5S- 0 0 120 -3,-0.8 -1,-0.3 -4,-0.4 -2,-0.2 0.848 116.0 -72.5 -67.3 -35.1 2.7 -3.1 16.1 38 38 A L T < 5S+ 0 0 73 -3,-1.0 2,-0.7 -4,-0.5 -1,-0.1 -0.631 94.1 6.9 175.5-109.1 -0.8 -2.3 16.1 39 39 A H T 5S+ 0 0 104 -2,-0.1 2,-0.3 -5,-0.1 -3,-0.1 -0.246 84.9 95.6-107.6 68.2 -3.1 -2.0 14.2 40 40 A M < - 0 0 32 -5,-0.8 2,-0.2 -2,-0.7 -2,-0.2 -0.982 43.0-166.5-151.5 132.6 -2.3 -3.2 10.9 41 41 A E > - 0 0 98 -2,-0.3 4,-1.9 1,-0.1 5,-0.1 -0.847 39.9 -97.7-123.7 160.1 -3.0 -6.4 9.5 42 42 A K H > S+ 0 0 116 -2,-0.2 4,-1.9 2,-0.2 5,-0.3 0.776 114.9 62.3 -47.1 -36.1 -2.0 -8.3 6.5 43 43 A E H > S+ 0 0 112 2,-0.2 4,-2.0 1,-0.2 3,-0.5 0.970 108.8 30.7 -55.7 -88.0 -5.1 -7.3 4.9 44 44 A V H > S+ 0 0 66 1,-0.2 4,-2.5 2,-0.2 -1,-0.2 0.738 114.9 69.5 -44.2 -30.0 -5.0 -3.7 4.6 45 45 A I H X S+ 0 0 2 -4,-1.9 4,-1.8 2,-0.2 3,-0.5 0.975 105.3 33.6 -53.2 -68.9 -1.3 -4.0 4.3 46 46 A R H X S+ 0 0 140 -4,-1.9 4,-3.2 -3,-0.5 5,-0.2 0.927 116.9 57.2 -55.7 -50.0 -1.2 -5.5 1.0 47 47 A V H X S+ 0 0 85 -4,-2.0 4,-1.7 -5,-0.3 -1,-0.3 0.827 111.2 45.1 -49.9 -36.2 -4.2 -3.6 -0.1 48 48 A W H X S+ 0 0 24 -4,-2.5 4,-3.1 -3,-0.5 3,-0.5 0.979 114.3 43.5 -70.0 -81.1 -2.4 -0.6 0.8 49 49 A F H X S+ 0 0 30 -4,-1.8 4,-2.0 1,-0.3 -2,-0.2 0.712 114.7 53.4 -31.6 -41.7 1.0 -1.3 -0.8 50 50 A C H X S+ 0 0 76 -4,-3.2 4,-0.8 -5,-0.3 3,-0.4 0.987 117.2 33.1 -62.9 -63.5 -0.6 -2.6 -3.7 51 51 A N H X S+ 0 0 95 -4,-1.7 4,-0.8 -3,-0.5 -2,-0.2 0.704 114.0 64.4 -65.9 -23.8 -2.8 0.4 -4.4 52 52 A R H >< S+ 0 0 68 -4,-3.1 3,-0.7 1,-0.2 4,-0.3 0.913 104.1 42.9 -66.4 -45.2 -0.1 2.5 -3.1 53 53 A R H >X S+ 0 0 93 -4,-2.0 4,-1.4 -3,-0.4 3,-0.5 0.632 102.4 69.5 -75.8 -15.8 2.3 1.6 -5.7 54 54 A Q H 3< S+ 0 0 107 -4,-0.8 -1,-0.2 1,-0.3 -2,-0.2 0.772 92.8 57.4 -72.3 -27.7 -0.3 1.8 -8.3 55 55 A K T << S+ 0 0 147 -4,-0.8 -1,-0.3 -3,-0.7 -2,-0.2 0.658 102.1 59.6 -74.6 -18.4 -0.4 5.4 -7.8 56 56 A E T <4 S+ 0 0 98 -3,-0.5 -2,-0.2 -4,-0.3 -1,-0.2 0.906 92.0 73.8 -76.6 -48.4 3.2 5.4 -8.6 57 57 A K S < S+ 0 0 64 -4,-1.4 2,-0.4 2,-0.1 3,-0.4 -0.060 73.5 105.0 -61.6 142.8 3.0 4.1 -11.8 58 58 A R + 0 0 61 1,-0.3 2,-5.4 -2,-0.0 -1,-0.1 0.269 20.1 146.4 158.5 72.8 2.0 5.9 -13.8 59 59 A I + 0 0 69 -2,-0.4 -1,-0.3 2,-0.0 -2,-0.1 0.844 31.8 176.3-110.1 11.7 2.2 7.0 -15.2 60 60 A N - 0 0 12 -2,-5.4 2,-0.1 -3,-0.4 -2,-0.0 0.485 17.0-179.0 -17.5-175.2 1.0 7.1 -16.3 61 61 A P 0 0 52 0, 0.0 -1,-0.0 0, 0.0 -2,-0.0 -0.220 360.0 360.0 119.8 77.0 0.1 8.0 -18.1 62 63 A S 0 0 56 -2,-0.1 0, 0.0 0, 0.0 0, 0.0 -0.909 360.0 360.0-109.8 360.0 -0.3 7.7 -18.1