==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=31-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER PROTEIN/DNA 05-MAY-99 2HDC . COMPND 2 MOLECULE: PROTEIN (TRANSCRIPTION FACTOR); . SOURCE 2 ORGANISM_SCIENTIFIC: RATTUS NORVEGICUS; . AUTHOR C.JIN,I.MARSDEN,X.CHEN,X.LIAO . 97 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 7297.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 59 60.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 6 6.2 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 9 9.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 7 7.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 37 38.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 1 1 0 0 1 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 2 A V 0 0 109 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 66.1 2.1 0.0 -1.2 2 3 A K - 0 0 162 2,-0.0 0, 0.0 36,-0.0 0, 0.0 0.498 360.0 -88.0 69.8 140.4 5.6 0.1 0.1 3 4 A P - 0 0 89 0, 0.0 2,-0.0 0, 0.0 0, 0.0 -0.214 49.2 -89.4 -75.0 168.9 6.6 2.3 3.0 4 5 A P - 0 0 109 0, 0.0 2,-0.3 0, 0.0 -2,-0.0 -0.245 41.0-157.7 -75.0 166.3 7.9 5.9 2.7 5 6 A Y - 0 0 137 -2,-0.0 2,-0.4 0, 0.0 0, 0.0 -0.920 31.7 -77.4-142.0 165.9 11.5 6.9 2.3 6 7 A S > - 0 0 13 -2,-0.3 4,-1.0 1,-0.2 5,-0.1 -0.525 34.9-172.3 -68.7 119.5 13.8 9.8 2.8 7 8 A Y H > S+ 0 0 37 -2,-0.4 4,-2.7 2,-0.2 -1,-0.2 0.797 80.8 67.2 -81.3 -32.0 13.2 12.3 -0.0 8 9 A I H > S+ 0 0 49 1,-0.2 4,-3.6 2,-0.2 5,-0.2 0.863 100.1 52.5 -55.4 -37.8 16.2 14.5 1.0 9 10 A A H > S+ 0 0 17 2,-0.2 4,-2.1 1,-0.2 -1,-0.2 0.963 110.3 44.7 -62.6 -54.3 18.4 11.6 -0.0 10 11 A L H X S+ 0 0 33 -4,-1.0 4,-1.7 1,-0.2 -2,-0.2 0.832 115.8 51.3 -58.6 -33.2 16.8 11.3 -3.5 11 12 A I H >X S+ 0 0 0 -4,-2.7 4,-2.6 2,-0.2 3,-0.5 0.981 105.4 51.3 -67.4 -59.3 17.0 15.1 -3.6 12 13 A T H 3X S+ 0 0 2 -4,-3.6 4,-2.7 1,-0.3 -2,-0.2 0.840 115.7 45.0 -45.6 -38.9 20.7 15.3 -2.7 13 14 A M H 3X S+ 0 0 57 -4,-2.1 4,-3.4 2,-0.2 -1,-0.3 0.817 108.2 56.3 -75.6 -32.9 21.2 12.8 -5.5 14 15 A A H << S+ 0 0 0 -4,-1.7 -2,-0.2 -3,-0.5 -1,-0.2 0.827 116.3 37.5 -67.1 -32.5 18.9 14.6 -7.8 15 16 A I H >< S+ 0 0 10 -4,-2.6 3,-1.0 2,-0.2 7,-0.3 0.875 119.3 47.0 -84.4 -43.3 21.1 17.7 -7.4 16 17 A L H 3< S+ 0 0 63 -4,-2.7 -2,-0.2 -5,-0.3 -3,-0.2 0.918 102.7 63.1 -63.6 -45.2 24.4 15.8 -7.2 17 18 A Q T 3< S+ 0 0 111 -4,-3.4 -1,-0.3 1,-0.3 -2,-0.2 0.690 101.2 60.0 -53.0 -18.0 23.5 13.8 -10.3 18 19 A S X> + 0 0 15 -3,-1.0 3,-1.1 1,-0.1 4,-0.7 -0.720 58.0 161.3-115.8 78.6 23.5 17.2 -11.9 19 20 A P T 34 + 0 0 101 0, 0.0 -1,-0.1 0, 0.0 -2,-0.1 0.443 58.6 92.6 -75.0 0.2 27.0 18.5 -11.5 20 21 A Q T 34 S- 0 0 173 2,-0.2 3,-0.1 -3,-0.1 -4,-0.1 0.504 106.5-113.3 -70.9 -3.4 26.3 20.9 -14.3 21 22 A K T <4 S+ 0 0 82 -3,-1.1 2,-0.3 -6,-0.3 -5,-0.1 0.993 81.7 89.8 67.3 65.0 25.2 23.3 -11.5 22 23 A K < + 0 0 117 -4,-0.7 2,-0.3 -7,-0.3 -1,-0.2 -0.888 42.3 173.0 179.1 152.1 21.5 23.5 -12.3 23 24 A L B -A 76 0A 15 53,-2.2 53,-4.2 -2,-0.3 2,-0.4 -0.973 18.7-141.1-164.7 159.9 18.2 21.8 -11.5 24 25 A T > - 0 0 40 -2,-0.3 4,-3.2 51,-0.3 5,-0.3 -0.989 13.8-143.0-136.1 125.2 14.5 22.1 -12.0 25 26 A L H > S+ 0 0 18 -2,-0.4 4,-2.3 1,-0.2 -1,-0.1 0.908 110.2 44.0 -47.2 -49.6 11.8 21.3 -9.5 26 27 A S H > S+ 0 0 23 1,-0.2 4,-1.9 2,-0.2 -1,-0.2 0.925 111.2 53.6 -62.3 -47.0 9.7 20.0 -12.3 27 28 A G H > S+ 0 0 29 1,-0.2 4,-2.8 2,-0.2 -2,-0.2 0.864 109.6 49.1 -55.4 -39.3 12.7 18.1 -13.8 28 29 A I H X S+ 0 0 4 -4,-3.2 4,-2.7 2,-0.2 5,-0.3 0.919 105.8 55.5 -66.7 -45.3 13.2 16.5 -10.4 29 30 A C H X S+ 0 0 30 -4,-2.3 4,-2.3 -5,-0.3 -1,-0.2 0.841 114.1 43.0 -55.4 -34.0 9.5 15.5 -10.1 30 31 A E H X S+ 0 0 131 -4,-1.9 4,-2.7 2,-0.2 -2,-0.2 0.889 110.6 53.3 -78.3 -42.9 10.1 13.8 -13.4 31 32 A F H X S+ 0 0 31 -4,-2.8 4,-0.7 2,-0.2 -2,-0.2 0.791 116.1 42.1 -61.8 -29.2 13.5 12.3 -12.5 32 33 A I H >X S+ 0 0 2 -4,-2.7 4,-4.2 2,-0.2 3,-0.6 0.944 114.9 46.3 -81.3 -56.1 11.8 10.8 -9.4 33 34 A S H 3< S+ 0 0 20 -4,-2.3 7,-0.3 1,-0.3 -2,-0.2 0.825 113.4 52.9 -55.3 -33.2 8.5 9.7 -11.1 34 35 A N H 3< S+ 0 0 128 -4,-2.7 -1,-0.3 1,-0.1 -2,-0.2 0.825 115.6 40.1 -71.4 -32.8 10.7 8.2 -13.8 35 36 A R H << S+ 0 0 153 -4,-0.7 -2,-0.2 -3,-0.6 -3,-0.2 0.929 124.9 34.5 -80.1 -50.8 12.7 6.4 -11.2 36 37 A F X - 0 0 57 -4,-4.2 4,-0.9 1,-0.2 -1,-0.3 -0.941 58.6-176.6-113.5 118.4 9.9 5.4 -8.9 37 38 A P H >> S+ 0 0 101 0, 0.0 4,-1.4 0, 0.0 3,-0.6 0.913 85.7 57.5 -75.1 -46.0 6.5 4.5 -10.5 38 39 A Y H 3> S+ 0 0 60 1,-0.3 4,-2.5 2,-0.2 5,-0.4 0.844 105.2 53.4 -52.2 -37.4 4.7 3.9 -7.3 39 40 A Y H 3> S+ 0 0 20 1,-0.2 4,-1.6 2,-0.2 -1,-0.3 0.856 110.0 46.0 -66.7 -36.8 5.6 7.5 -6.3 40 41 A R H << S+ 0 0 175 -4,-0.9 -1,-0.2 -3,-0.6 -2,-0.2 0.613 112.0 55.4 -80.1 -13.9 4.1 8.8 -9.5 41 42 A E H < S+ 0 0 133 -4,-1.4 -2,-0.2 -3,-0.1 -3,-0.2 0.943 121.4 23.1 -81.7 -55.6 1.1 6.6 -8.9 42 43 A K H < S+ 0 0 115 -4,-2.5 -3,-0.2 -5,-0.1 -2,-0.2 0.948 75.9 169.5 -75.6 -53.0 0.1 7.8 -5.5 43 44 A F < - 0 0 69 -4,-1.6 2,-1.9 -5,-0.4 3,-0.2 0.880 13.3-171.4 36.1 61.7 1.8 11.2 -5.7 44 45 A P S S- 0 0 85 0, 0.0 -1,-0.2 0, 0.0 -4,-0.1 -0.148 75.6 -45.2 -75.0 43.8 0.1 12.4 -2.5 45 46 A A S > S+ 0 0 45 -2,-1.9 4,-1.4 -3,-0.1 3,-0.2 0.914 71.4 172.4 91.4 66.0 1.4 15.8 -3.2 46 47 A W H > + 0 0 14 -3,-0.2 4,-1.8 1,-0.2 5,-0.5 0.433 68.8 80.1 -82.1 -0.0 5.1 15.3 -4.2 47 48 A Q H > S+ 0 0 75 2,-0.2 4,-2.2 3,-0.2 -1,-0.2 0.983 106.1 21.9 -68.9 -60.8 5.1 19.0 -5.1 48 49 A N H > S+ 0 0 89 2,-0.2 4,-2.2 3,-0.2 6,-0.2 0.831 124.9 57.7 -75.6 -34.4 5.5 20.3 -1.6 49 50 A S H X S+ 0 0 49 -4,-1.4 4,-2.7 2,-0.2 5,-0.2 0.959 116.2 33.1 -59.5 -54.7 7.0 17.1 -0.4 50 51 A I H X S+ 0 0 3 -4,-1.8 4,-2.4 2,-0.2 5,-0.2 0.979 120.3 49.3 -65.6 -58.7 9.8 17.1 -3.0 51 52 A R H X S+ 0 0 92 -4,-2.2 4,-3.3 -5,-0.5 5,-0.5 0.814 113.5 51.3 -49.9 -33.2 10.1 20.9 -3.0 52 53 A H H X S+ 0 0 89 -4,-2.2 4,-2.8 2,-0.2 -1,-0.2 0.974 115.4 37.0 -68.8 -57.4 10.2 20.6 0.8 53 54 A N H < S+ 0 0 24 -4,-2.7 5,-0.2 1,-0.2 -2,-0.2 0.623 119.9 55.1 -69.5 -12.6 12.9 18.0 0.9 54 55 A L H X S+ 0 0 0 -4,-2.4 4,-0.9 -6,-0.2 5,-0.3 0.931 123.7 19.6 -83.6 -54.3 14.4 19.8 -2.0 55 56 A S H X S+ 0 0 40 -4,-3.3 2,-2.4 -5,-0.2 4,-1.8 0.926 113.3 72.8 -80.6 -50.7 14.7 23.2 -0.5 56 57 A L H < S+ 0 0 93 -4,-2.8 -1,-0.2 -5,-0.5 -48,-0.0 -0.447 113.1 20.6 -68.4 80.2 14.5 22.2 3.1 57 58 A N H 4 S+ 0 0 67 -2,-2.4 -1,-0.2 -3,-0.1 -2,-0.1 -0.373 123.1 46.5 160.3 -68.4 18.0 20.7 3.2 58 59 A D H < S- 0 0 7 -4,-0.9 -3,-0.2 -5,-0.2 -2,-0.1 0.926 84.1-152.8 -66.2 -46.5 20.1 22.1 0.4 59 60 A C < + 0 0 100 -4,-1.8 20,-0.2 -5,-0.3 2,-0.1 0.993 38.8 144.8 68.5 64.9 19.0 25.7 1.1 60 61 A F - 0 0 18 -6,-0.1 2,-0.4 -5,-0.1 18,-0.2 -0.346 50.3 -87.7-115.9-163.1 19.5 27.1 -2.4 61 62 A V E -B 77 0A 103 16,-2.2 16,-2.5 -2,-0.1 2,-0.3 -0.938 37.5-173.2-117.4 137.3 17.8 29.6 -4.6 62 63 A K E -B 76 0A 78 -2,-0.4 14,-0.2 14,-0.2 -38,-0.1 -0.756 22.3-121.1-122.6 169.4 15.0 28.9 -7.0 63 64 A I E -B 75 0A 35 12,-2.1 12,-0.7 -2,-0.3 3,-0.2 -0.967 24.4-150.4-118.4 121.9 13.1 30.8 -9.7 64 65 A P - 0 0 106 0, 0.0 11,-0.1 0, 0.0 2,-0.0 0.027 61.4 -26.8 -75.0-172.4 9.3 31.4 -9.3 65 66 A R S S+ 0 0 202 2,-0.1 9,-0.1 9,-0.1 4,-0.0 -0.130 81.7 180.0 -41.1 101.2 6.9 31.8 -12.2 66 67 A E > - 0 0 100 -3,-0.2 2,-2.7 7,-0.2 3,-0.8 -0.599 45.2 -90.4-106.7 169.1 9.2 33.1 -14.8 67 68 A P T 3 S+ 0 0 134 0, 0.0 -2,-0.1 0, 0.0 -1,-0.0 -0.291 121.0 49.0 -75.0 55.7 8.7 34.2 -18.4 68 69 A G T 3 S+ 0 0 48 -2,-2.7 -3,-0.0 5,-0.1 0, 0.0 0.130 73.1 105.1 175.7 43.7 9.5 30.7 -19.6 69 70 A N < + 0 0 14 -3,-0.8 2,-2.1 3,-0.1 5,-0.1 -0.513 36.8 174.4-134.8 64.3 7.5 28.2 -17.6 70 71 A P S S- 0 0 120 0, 0.0 2,-0.7 0, 0.0 4,-0.1 -0.511 80.4 -34.2 -75.0 79.6 4.7 27.0 -19.9 71 72 A G S S+ 0 0 65 -2,-2.1 -2,-0.0 2,-0.1 3,-0.0 -0.726 142.6 0.3 111.1 -80.1 3.3 24.3 -17.6 72 73 A K S S+ 0 0 157 -2,-0.7 2,-0.5 2,-0.1 -1,-0.1 -0.352 88.9 126.1-141.3 54.1 6.3 22.9 -15.8 73 74 A G + 0 0 25 -7,-0.1 -7,-0.2 -47,-0.1 2,-0.2 -0.702 33.3 134.0-116.9 77.4 9.2 24.9 -17.1 74 75 A N - 0 0 15 -2,-0.5 2,-0.3 -5,-0.1 -47,-0.1 -0.454 43.2-130.6-111.8-174.5 11.0 26.4 -14.1 75 76 A Y E - B 0 63A 125 -12,-0.7 -12,-2.1 -2,-0.2 2,-0.4 -0.994 11.4-166.5-145.9 136.0 14.6 26.6 -12.9 76 77 A W E -AB 23 62A 16 -53,-4.2 -53,-2.2 -2,-0.3 2,-0.4 -0.988 6.6-166.2-125.7 129.6 16.3 25.8 -9.7 77 78 A T E - B 0 61A 63 -16,-2.5 -16,-2.2 -2,-0.4 2,-0.4 -0.965 2.8-168.2-119.8 130.5 19.8 26.9 -8.8 78 79 A L - 0 0 16 -2,-0.4 -18,-0.1 -18,-0.2 -19,-0.0 -0.907 14.3-134.1-118.0 145.1 21.9 25.5 -6.0 79 80 A D > - 0 0 102 -2,-0.4 2,-2.7 -20,-0.2 3,-1.0 -0.398 40.9 -84.7 -90.3 170.4 25.2 26.9 -4.6 80 81 A P T 3 S+ 0 0 70 0, 0.0 -1,-0.1 0, 0.0 -2,-0.0 -0.402 107.8 85.0 -75.0 66.4 28.3 25.0 -3.7 81 82 A Q T 3> S+ 0 0 121 -2,-2.7 4,-3.2 3,-0.1 3,-0.3 0.572 73.8 60.1-130.7 -43.4 27.0 24.0 -0.3 82 83 A S H <> S+ 0 0 1 -3,-1.0 4,-1.3 1,-0.3 5,-0.2 0.949 109.7 44.7 -54.9 -54.3 24.9 20.9 -0.7 83 84 A E H > S+ 0 0 85 -4,-0.3 4,-2.2 1,-0.2 -1,-0.3 0.677 113.7 55.3 -64.3 -17.1 27.8 18.9 -2.1 84 85 A D H > S+ 0 0 108 -3,-0.3 4,-2.0 2,-0.2 -2,-0.2 0.932 107.3 44.2 -79.9 -51.5 29.8 20.5 0.8 85 86 A M H X S+ 0 0 85 -4,-3.2 4,-0.7 1,-0.2 -2,-0.2 0.662 120.4 46.4 -66.8 -16.3 27.6 19.4 3.6 86 87 A F H < S+ 0 0 47 -4,-1.3 5,-0.5 -5,-0.3 -2,-0.2 0.907 107.0 51.4 -89.7 -53.8 27.5 16.0 1.9 87 88 A D H < S+ 0 0 144 -4,-2.2 -2,-0.2 1,-0.2 -3,-0.2 0.883 106.7 58.8 -50.4 -42.7 31.1 15.4 1.1 88 89 A N H < S+ 0 0 143 -4,-2.0 -1,-0.2 -5,-0.1 -2,-0.2 0.945 111.5 42.4 -51.7 -54.9 31.8 16.2 4.7 89 90 A G S < S- 0 0 38 -4,-0.7 -3,-0.1 -3,-0.2 0, 0.0 0.342 90.6-117.1 -71.6-152.3 29.6 13.3 5.8 90 91 A S - 0 0 94 0, 0.0 -3,-0.1 0, 0.0 -4,-0.1 -0.193 68.6 -67.5-149.5 45.8 29.5 9.9 4.2 91 92 A F - 0 0 146 -5,-0.5 2,-0.8 1,-0.2 -5,-0.1 0.953 68.9-177.1 66.0 52.7 25.9 9.6 2.8 92 93 A L - 0 0 103 -6,-0.1 2,-0.8 1,-0.1 -1,-0.2 -0.761 12.7-171.3 -87.6 112.2 24.2 9.5 6.2 93 94 A R S S+ 0 0 90 -2,-0.8 -87,-0.1 1,-0.1 -1,-0.1 -0.517 81.2 11.8-101.8 62.6 20.5 9.0 5.7 94 95 A R S S- 0 0 137 -2,-0.8 -1,-0.1 2,-0.1 -2,-0.1 -0.182 73.8-152.1 169.6 -60.8 19.4 9.6 9.3 95 96 A R S S- 0 0 196 1,-0.2 -3,-0.0 2,-0.1 0, 0.0 0.984 76.6 -52.2 59.6 62.7 22.2 11.1 11.4 96 97 A K 0 0 209 1,-0.1 -1,-0.2 0, 0.0 -2,-0.1 0.902 360.0 360.0 37.4 64.8 21.0 9.7 14.7 97 98 A R 0 0 226 0, 0.0 -1,-0.1 0, 0.0 -2,-0.1 -0.048 360.0 360.0 -39.4 360.0 17.6 11.1 14.2