==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=31-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER TRANSCRIPTION/DNA 10-FEB-98 2HDD . COMPND 2 MOLECULE: DNA (5'- . SOURCE 2 SYNTHETIC: YES; . AUTHOR L.TUCKER-KELLOGG,M.A.ROULD,K.A.CHAMBERS,S.E.ADES,R.T.SAUER, . 111 2 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 9052.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 80 72.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 2 1.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 9 8.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 67 60.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 2 1.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 2 0 2 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 5 A R 0 0 293 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 98.1 26.7 14.6 40.2 2 6 A T - 0 0 80 1,-0.1 2,-0.5 0, 0.0 0, 0.0 -0.043 360.0-141.2 -56.8 156.5 27.0 15.5 36.5 3 7 A A - 0 0 95 0, 0.0 -1,-0.1 0, 0.0 2,-0.0 -0.980 23.8-131.8-122.0 109.9 28.8 18.6 35.3 4 8 A F - 0 0 54 -2,-0.5 2,-0.2 1,-0.1 0, 0.0 -0.344 19.6-119.1 -64.6 141.6 26.9 20.1 32.4 5 9 A S >> - 0 0 51 1,-0.1 4,-3.5 -2,-0.0 3,-0.8 -0.570 23.0-115.8 -78.2 150.3 28.9 21.0 29.3 6 10 A S H 3> S+ 0 0 100 1,-0.3 4,-1.7 2,-0.2 -1,-0.1 0.685 119.4 58.9 -60.7 -17.6 28.9 24.7 28.4 7 11 A E H 3> S+ 0 0 133 2,-0.2 4,-1.0 3,-0.1 -1,-0.3 0.863 112.0 39.7 -74.7 -39.5 27.1 23.6 25.2 8 12 A Q H X> S+ 0 0 28 -3,-0.8 4,-2.8 2,-0.2 3,-0.7 0.962 114.6 53.1 -72.5 -47.5 24.4 22.2 27.4 9 13 A L H 3X S+ 0 0 50 -4,-3.5 4,-2.4 1,-0.3 5,-0.2 0.858 107.9 51.0 -57.2 -36.6 24.6 25.1 29.8 10 14 A A H 3X S+ 0 0 39 -4,-1.7 4,-1.7 -5,-0.2 -1,-0.3 0.821 112.4 45.8 -70.1 -34.6 24.1 27.7 27.0 11 15 A R H - 0 0 78 -2,-0.2 4,-2.9 1,-0.1 5,-0.2 -0.673 34.6-108.9-100.2 163.9 6.2 21.8 29.8 24 28 A E H > S+ 0 0 135 -2,-0.3 4,-2.2 1,-0.2 5,-0.1 0.912 119.9 50.6 -60.5 -41.4 6.5 18.0 29.5 25 29 A R H > S+ 0 0 172 2,-0.2 4,-2.3 1,-0.2 -1,-0.2 0.917 111.9 45.3 -63.8 -46.9 7.1 18.3 25.7 26 30 A R H > S+ 0 0 58 1,-0.2 4,-2.3 2,-0.2 5,-0.2 0.932 111.6 52.8 -66.2 -39.9 9.9 20.9 26.1 27 31 A R H X S+ 0 0 74 -4,-2.9 4,-1.6 1,-0.2 -2,-0.2 0.892 111.7 48.1 -59.2 -38.9 11.5 18.9 28.9 28 32 A Q H X S+ 0 0 84 -4,-2.2 4,-2.0 2,-0.2 -1,-0.2 0.873 110.7 48.5 -66.9 -44.6 11.5 15.8 26.6 29 33 A Q H X S+ 0 0 51 -4,-2.3 4,-2.8 1,-0.2 5,-0.2 0.902 111.7 49.4 -66.6 -38.5 12.9 17.6 23.6 30 34 A L H X S+ 0 0 0 -4,-2.3 4,-2.2 2,-0.2 -1,-0.2 0.855 109.0 52.7 -67.9 -39.9 15.7 19.1 25.7 31 35 A S H X>S+ 0 0 23 -4,-1.6 5,-2.4 -5,-0.2 4,-1.3 0.946 114.2 43.8 -57.7 -50.2 16.6 15.8 27.2 32 36 A S H ><5S+ 0 0 98 -4,-2.0 3,-0.7 3,-0.2 -2,-0.2 0.981 117.1 42.9 -59.1 -63.0 16.8 14.2 23.7 33 37 A E H 3<5S+ 0 0 98 -4,-2.8 -1,-0.2 1,-0.3 -2,-0.2 0.788 121.6 40.1 -57.5 -35.0 18.8 17.1 22.1 34 38 A L H 3<5S- 0 0 14 -4,-2.2 -1,-0.3 -5,-0.2 -2,-0.2 0.611 105.0-123.8 -93.3 -10.4 21.2 17.5 25.0 35 39 A G T <<5 + 0 0 61 -4,-1.3 2,-0.3 -3,-0.7 -3,-0.2 0.963 67.4 125.0 68.7 49.2 21.7 13.9 25.8 36 40 A L < - 0 0 17 -5,-2.4 -1,-0.3 -6,-0.2 2,-0.2 -0.927 66.4 -96.1-134.6 163.7 20.5 14.3 29.4 37 41 A N >> - 0 0 113 -2,-0.3 4,-1.3 1,-0.1 3,-0.8 -0.505 32.0-122.4 -77.9 148.2 18.0 12.6 31.7 38 42 A E H 3> S+ 0 0 71 1,-0.2 4,-2.2 2,-0.2 5,-0.1 0.811 111.9 61.4 -58.9 -29.2 14.7 14.5 32.0 39 43 A A H 3> S+ 0 0 61 1,-0.2 4,-2.4 2,-0.2 -1,-0.2 0.830 101.3 52.0 -67.1 -33.5 15.2 14.6 35.8 40 44 A Q H <> S+ 0 0 34 -3,-0.8 4,-1.8 2,-0.2 -1,-0.2 0.875 109.8 48.4 -71.2 -37.6 18.4 16.6 35.3 41 45 A I H X S+ 0 0 0 -4,-1.3 4,-2.6 2,-0.2 5,-0.2 0.937 112.6 48.9 -64.0 -49.0 16.6 19.2 33.1 42 46 A K H X S+ 0 0 104 -4,-2.2 4,-2.0 1,-0.2 -2,-0.2 0.908 114.2 45.8 -55.1 -47.7 13.8 19.4 35.7 43 47 A I H X S+ 0 0 85 -4,-2.4 4,-1.9 2,-0.2 -1,-0.2 0.756 109.8 53.7 -70.5 -30.4 16.3 19.9 38.5 44 48 A W H X S+ 0 0 33 -4,-1.8 4,-2.4 2,-0.2 -2,-0.2 0.934 111.7 45.0 -71.8 -42.9 18.4 22.4 36.6 45 49 A F H X S+ 0 0 1 -4,-2.6 4,-2.3 2,-0.2 -2,-0.2 0.895 112.3 52.5 -64.3 -39.4 15.3 24.6 36.0 46 50 A K H X S+ 0 0 111 -4,-2.0 4,-1.4 -5,-0.2 -1,-0.2 0.926 113.6 43.2 -62.3 -46.7 14.2 24.2 39.6 47 51 A N H X S+ 0 0 92 -4,-1.9 4,-2.2 2,-0.2 -2,-0.2 0.859 110.6 55.8 -70.3 -34.2 17.6 25.3 40.9 48 52 A K H X S+ 0 0 38 -4,-2.4 4,-2.6 2,-0.2 5,-0.2 0.939 106.3 49.5 -64.3 -49.6 17.8 28.2 38.4 49 53 A R H X S+ 0 0 59 -4,-2.3 4,-1.5 1,-0.2 -1,-0.2 0.899 113.3 48.2 -53.6 -42.4 14.5 29.7 39.5 50 54 A A H X S+ 0 0 48 -4,-1.4 4,-0.9 2,-0.2 -1,-0.2 0.853 110.5 50.5 -67.6 -36.6 15.8 29.5 43.1 51 55 A K H >< S+ 0 0 130 -4,-2.2 3,-1.1 1,-0.2 -2,-0.2 0.959 110.5 49.1 -65.3 -49.5 19.1 31.0 42.3 52 56 A I H >< S+ 0 0 77 -4,-2.6 3,-1.0 1,-0.3 -1,-0.2 0.796 101.8 64.6 -59.0 -34.4 17.4 34.0 40.5 53 57 A K H 3< S+ 0 0 189 -4,-1.5 2,-0.3 1,-0.3 -1,-0.3 0.841 102.3 49.4 -60.1 -34.5 15.2 34.4 43.5 54 58 A K T << 0 0 171 -3,-1.1 -1,-0.3 -4,-0.9 -2,-0.1 -0.342 360.0 360.0-101.5 51.3 18.3 35.3 45.5 55 59 A S < 0 0 137 -3,-1.0 -3,-0.1 -2,-0.3 -4,-0.0 -0.868 360.0 360.0 -96.3 360.0 19.7 37.9 43.0 56 !* 0 0 0 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 360.0 0.0 0.0 0.0 57 2 B K 0 0 153 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 174.9 2.6 1.6 49.1 58 3 B R - 0 0 137 2,-0.0 2,-0.0 1,-0.0 0, 0.0 0.903 360.0-116.1 47.6 106.0 1.3 2.3 52.6 59 4 B P - 0 0 105 0, 0.0 -1,-0.0 0, 0.0 2,-0.0 -0.305 29.1-106.7 -65.1 145.9 -2.0 0.5 53.3 60 5 B R - 0 0 250 -2,-0.0 2,-0.3 1,-0.0 -2,-0.0 -0.331 39.2-158.1 -69.4 160.6 -5.2 2.5 53.9 61 6 B T - 0 0 69 38,-0.1 2,-0.6 2,-0.0 -1,-0.0 -0.998 16.6-127.4-145.3 142.7 -6.3 2.5 57.6 62 7 B A - 0 0 91 -2,-0.3 2,-0.3 1,-0.0 -2,-0.0 -0.799 28.0-135.9 -92.0 125.2 -9.6 3.1 59.3 63 8 B F - 0 0 45 -2,-0.6 2,-0.0 1,-0.1 32,-0.0 -0.580 19.3-122.9 -80.6 138.7 -9.3 5.7 62.0 64 9 B S > - 0 0 56 -2,-0.3 4,-2.7 1,-0.1 5,-0.2 -0.321 27.5-104.1 -72.5 170.4 -11.0 4.9 65.3 65 10 B S H > S+ 0 0 102 1,-0.2 4,-1.7 2,-0.2 5,-0.1 0.793 123.4 47.6 -66.8 -34.1 -13.6 7.3 66.7 66 11 B E H > S+ 0 0 123 2,-0.2 4,-2.8 3,-0.2 -1,-0.2 0.860 111.7 54.8 -74.9 -31.8 -11.3 8.8 69.3 67 12 B Q H > S+ 0 0 35 2,-0.2 4,-2.7 1,-0.2 -2,-0.2 0.991 112.9 38.9 -60.7 -59.7 -8.7 9.1 66.5 68 13 B L H X S+ 0 0 62 -4,-2.7 4,-2.4 1,-0.2 5,-0.2 0.827 115.0 54.1 -57.8 -39.4 -11.0 11.1 64.3 69 14 B A H X S+ 0 0 49 -4,-1.7 4,-2.2 -5,-0.2 -1,-0.2 0.956 112.7 44.8 -60.7 -45.0 -12.4 13.0 67.2 70 15 B R H X S+ 0 0 44 -4,-2.8 4,-1.7 1,-0.2 -2,-0.2 0.895 113.1 49.1 -66.9 -39.0 -8.9 13.9 68.2 71 16 B L H X S+ 0 0 0 -4,-2.7 4,-2.6 1,-0.2 -1,-0.2 0.856 112.2 48.8 -69.9 -35.2 -7.8 14.8 64.6 72 17 B K H X S+ 0 0 108 -4,-2.4 4,-1.7 2,-0.2 -2,-0.2 0.890 107.7 54.2 -73.6 -35.9 -10.8 17.1 64.1 73 18 B R H X S+ 0 0 180 -4,-2.2 4,-0.6 -5,-0.2 -2,-0.2 0.910 114.0 42.0 -63.4 -41.2 -10.3 18.9 67.4 74 19 B E H >X S+ 0 0 39 -4,-1.7 4,-2.0 1,-0.2 3,-1.7 0.946 112.6 52.8 -69.3 -48.3 -6.8 19.7 66.3 75 20 B F H 3< S+ 0 0 14 -4,-2.6 -2,-0.2 1,-0.3 -1,-0.2 0.763 101.1 65.1 -58.8 -26.0 -7.8 20.5 62.7 76 21 B N H 3< S+ 0 0 124 -4,-1.7 -1,-0.3 1,-0.2 -2,-0.2 0.773 108.0 37.4 -69.3 -28.1 -10.4 22.9 64.3 77 22 B E H << S+ 0 0 150 -3,-1.7 2,-0.3 -4,-0.6 -2,-0.2 0.837 135.2 4.1 -88.1 -41.9 -7.6 25.1 65.7 78 23 B N < - 0 0 95 -4,-2.0 -1,-0.3 1,-0.1 -2,-0.1 -0.935 53.6-151.6-152.9 124.2 -5.1 24.9 62.9 79 24 B R S S+ 0 0 132 -2,-0.3 2,-0.4 -3,-0.2 29,-0.1 0.495 83.5 65.1 -73.9 -4.7 -5.4 23.2 59.5 80 25 B Y S S- 0 0 155 -5,-0.0 2,-0.4 28,-0.0 21,-0.0 -0.932 71.0-149.0-122.7 143.7 -1.7 22.7 59.3 81 26 B L - 0 0 41 -2,-0.4 2,-0.2 20,-0.1 -2,-0.0 -0.920 8.1-141.4-113.4 136.1 0.5 20.5 61.5 82 27 B T > - 0 0 89 -2,-0.4 4,-2.3 1,-0.1 5,-0.2 -0.579 31.4-111.2 -87.7 160.4 4.1 21.2 62.4 83 28 B E H > S+ 0 0 51 -2,-0.2 4,-1.8 2,-0.2 5,-0.1 0.784 116.4 58.2 -63.6 -28.0 6.3 18.1 62.5 84 29 B R H > S+ 0 0 195 2,-0.2 4,-2.4 1,-0.2 -1,-0.2 0.974 111.4 37.9 -65.2 -56.6 6.6 18.5 66.3 85 30 B R H > S+ 0 0 58 1,-0.2 4,-3.5 2,-0.2 5,-0.3 0.853 113.5 57.6 -65.2 -35.9 2.8 18.3 67.0 86 31 B R H X S+ 0 0 61 -4,-2.3 4,-2.0 2,-0.2 -1,-0.2 0.901 108.9 45.7 -62.4 -39.1 2.4 15.6 64.3 87 32 B Q H X S+ 0 0 105 -4,-1.8 4,-2.2 2,-0.2 -2,-0.2 0.931 114.2 50.8 -65.5 -45.3 5.0 13.5 66.2 88 33 B Q H >X S+ 0 0 93 -4,-2.4 4,-2.6 1,-0.2 3,-0.6 0.979 112.8 42.6 -53.4 -65.8 3.0 14.3 69.4 89 34 B L H 3X S+ 0 0 0 -4,-3.5 4,-2.8 1,-0.2 6,-0.3 0.833 110.8 58.4 -51.2 -34.2 -0.3 13.3 68.0 90 35 B S H 3X>S+ 0 0 25 -4,-2.0 4,-1.7 -5,-0.3 5,-1.3 0.924 110.3 42.4 -64.9 -40.9 1.2 10.3 66.4 91 36 B S H <<5S+ 0 0 102 -4,-2.2 -2,-0.2 -3,-0.6 -1,-0.2 0.911 116.4 47.2 -73.2 -41.1 2.4 9.1 69.8 92 37 B E H <5S+ 0 0 96 -4,-2.6 -2,-0.2 -5,-0.2 -1,-0.2 0.874 121.0 36.3 -69.0 -37.2 -0.9 10.0 71.6 93 38 B L H <5S- 0 0 18 -4,-2.8 -2,-0.2 -5,-0.2 -1,-0.2 0.682 99.8-122.6 -93.3 -15.5 -3.1 8.4 69.0 94 39 B G T <5 + 0 0 65 -4,-1.7 2,-0.4 1,-0.3 -3,-0.2 0.891 67.6 137.5 72.6 34.2 -1.1 5.3 67.9 95 40 B L < - 0 0 10 -5,-1.3 -1,-0.3 -6,-0.3 -2,-0.2 -0.966 61.9-111.2-116.1 135.4 -1.3 6.6 64.3 96 41 B N >> - 0 0 89 -2,-0.4 4,-1.5 1,-0.1 3,-0.7 -0.372 28.5-122.7 -62.3 139.7 1.7 6.6 61.9 97 42 B E H 3> S+ 0 0 56 1,-0.2 4,-2.2 2,-0.2 5,-0.1 0.838 111.6 57.3 -54.2 -35.4 2.8 10.2 61.3 98 43 B A H 3> S+ 0 0 18 1,-0.2 4,-2.3 2,-0.2 -1,-0.2 0.875 103.7 52.2 -63.7 -38.7 2.3 9.7 57.5 99 44 B Q H <> S+ 0 0 30 -3,-0.7 4,-2.1 2,-0.2 -1,-0.2 0.876 110.6 48.0 -64.3 -38.4 -1.4 8.8 58.1 100 45 B I H X S+ 0 0 0 -4,-1.5 4,-2.3 2,-0.2 -2,-0.2 0.914 110.5 51.2 -68.5 -42.1 -1.9 12.0 60.1 101 46 B K H X S+ 0 0 102 -4,-2.2 4,-2.0 1,-0.2 -2,-0.2 0.914 113.0 45.6 -61.1 -45.9 -0.1 14.1 57.4 102 47 B I H X S+ 0 0 64 -4,-2.3 4,-2.8 2,-0.2 5,-0.3 0.864 108.8 55.9 -68.9 -34.2 -2.3 12.6 54.7 103 48 B W H X S+ 0 0 32 -4,-2.1 4,-2.2 1,-0.2 -2,-0.2 0.919 110.6 45.1 -63.1 -43.2 -5.5 13.0 56.9 104 49 B F H X S+ 0 0 3 -4,-2.3 4,-2.2 2,-0.2 -2,-0.2 0.894 113.3 51.3 -65.9 -40.2 -4.7 16.8 57.2 105 50 B K H X S+ 0 0 114 -4,-2.0 4,-1.5 2,-0.2 -2,-0.2 0.963 114.4 40.9 -61.0 -54.0 -3.9 17.1 53.5 106 51 B N H X S+ 0 0 91 -4,-2.8 4,-2.5 1,-0.2 -2,-0.2 0.908 114.5 52.5 -62.3 -43.7 -7.2 15.4 52.3 107 52 B K H X S+ 0 0 58 -4,-2.2 4,-2.6 -5,-0.3 5,-0.2 0.882 105.5 55.1 -61.7 -37.1 -9.3 17.2 54.9 108 53 B R H X S+ 0 0 64 -4,-2.2 4,-1.0 1,-0.2 -1,-0.2 0.881 111.1 46.4 -63.6 -34.2 -7.8 20.5 53.7 109 54 B A H < S+ 0 0 69 -4,-1.5 -2,-0.2 2,-0.2 -1,-0.2 0.893 111.8 48.8 -74.2 -41.3 -9.0 19.7 50.2 110 55 B K H < S+ 0 0 177 -4,-2.5 -2,-0.2 1,-0.2 -3,-0.2 0.964 111.7 49.2 -64.1 -48.2 -12.5 18.5 51.3 111 56 B I H < 0 0 74 -4,-2.6 -1,-0.2 -5,-0.1 -2,-0.2 0.777 360.0 360.0 -61.4 -31.6 -13.1 21.7 53.4 112 57 B K < 0 0 221 -4,-1.0 -2,-0.2 -5,-0.2 -3,-0.2 0.934 360.0 360.0 -83.6 360.0 -11.9 23.8 50.4