==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=20-JUL-2011 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER IMMUNE SYSTEM/DNA 21-JUN-06 2HEO . COMPND 2 MOLECULE: 5'-D(*TP*CP*GP*CP*GP*CP*G)-3'; . SOURCE 2 SYNTHETIC: YES; . AUTHOR C.MAGIS,S.GASPARINI,J.B.CHARBONNIER,E.STURA,M.H.LE DU,A.MENE . 117 2 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 7621.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 79 67.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 14 12.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 1 0.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 7 6.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 54 46.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 2 1.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 2 0 0 1 0 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 3 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 2 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 112 A D > 0 0 114 0, 0.0 4,-1.6 0, 0.0 5,-0.1 0.000 360.0 360.0 360.0 -86.2 -21.8 71.4 -9.7 2 113 A N H > + 0 0 115 1,-0.2 4,-2.1 2,-0.2 5,-0.2 0.887 360.0 54.3 -52.1 -43.1 -21.1 74.9 -8.5 3 114 A L H > S+ 0 0 24 1,-0.2 4,-3.3 2,-0.2 5,-0.2 0.892 103.2 53.9 -63.9 -42.1 -19.2 73.4 -5.6 4 115 A E H > S+ 0 0 44 2,-0.2 4,-2.9 1,-0.2 -1,-0.2 0.884 110.3 48.1 -56.7 -42.9 -16.9 71.3 -7.8 5 116 A Q H X S+ 0 0 87 -4,-1.6 4,-2.8 2,-0.2 -2,-0.2 0.916 113.8 45.5 -61.2 -51.1 -16.0 74.5 -9.8 6 117 A K H X S+ 0 0 89 -4,-2.1 4,-2.3 2,-0.2 5,-0.2 0.940 113.9 49.7 -59.7 -50.0 -15.3 76.5 -6.7 7 118 A I H X S+ 0 0 0 -4,-3.3 4,-2.2 1,-0.2 -2,-0.2 0.968 114.0 45.7 -52.7 -53.1 -13.3 73.6 -5.2 8 119 A L H X S+ 0 0 14 -4,-2.9 4,-2.5 1,-0.2 -2,-0.2 0.867 111.6 51.5 -62.6 -35.3 -11.3 73.3 -8.5 9 120 A Q H X S+ 0 0 82 -4,-2.8 4,-2.7 2,-0.2 -1,-0.2 0.877 110.1 49.6 -66.0 -35.7 -10.7 77.1 -8.7 10 121 A V H X S+ 0 0 30 -4,-2.3 4,-1.0 2,-0.2 -2,-0.2 0.898 113.8 44.8 -73.0 -39.9 -9.4 77.1 -5.1 11 122 A L H X S+ 0 0 0 -4,-2.2 4,-3.1 -5,-0.2 46,-0.4 0.907 116.3 46.9 -65.6 -44.5 -7.0 74.2 -5.8 12 123 A S H < S+ 0 0 60 -4,-2.5 -2,-0.2 1,-0.2 -1,-0.2 0.887 109.3 53.1 -64.6 -47.5 -5.9 75.7 -9.1 13 124 A D H < S+ 0 0 139 -4,-2.7 -1,-0.2 1,-0.2 -2,-0.2 0.698 117.0 39.1 -60.7 -27.8 -5.4 79.2 -7.7 14 125 A D H < S- 0 0 98 -4,-1.0 -2,-0.2 -3,-0.2 -1,-0.2 0.880 88.5-160.2 -86.8 -49.9 -3.1 77.8 -5.0 15 126 A G < + 0 0 48 -4,-3.1 -3,-0.1 1,-0.3 -4,-0.1 0.330 61.9 55.5 87.5 -6.4 -1.4 75.2 -7.2 16 127 A G S S- 0 0 17 -5,-0.2 -1,-0.3 1,-0.1 41,-0.3 -0.603 102.8 -33.9-137.2-163.5 -0.2 73.0 -4.4 17 128 A P - 0 0 78 0, 0.0 2,-0.4 0, 0.0 39,-0.2 -0.400 54.2-169.4 -67.3 140.8 -1.5 71.1 -1.4 18 129 A V E -A 55 0A 13 37,-1.9 37,-1.9 -3,-0.1 2,-0.1 -0.999 20.3-123.2-131.4 127.8 -4.4 72.6 0.4 19 130 A A E >> -A 54 0A 21 -2,-0.4 3,-1.5 35,-0.2 4,-1.3 -0.434 21.8-121.7 -70.6 144.5 -5.9 71.6 3.7 20 131 A I H >> S+ 0 0 2 33,-2.7 4,-2.1 1,-0.3 3,-0.6 0.871 112.3 58.2 -52.2 -41.7 -9.5 70.6 3.8 21 132 A F H 3> S+ 0 0 119 1,-0.3 4,-1.8 2,-0.2 -1,-0.3 0.799 99.9 57.3 -64.5 -26.3 -10.2 73.3 6.5 22 133 A Q H <> S+ 0 0 82 -3,-1.5 4,-1.3 2,-0.2 -1,-0.3 0.871 107.8 48.5 -66.5 -38.1 -8.9 75.9 4.0 23 134 A L H - 0 0 83 0, 0.0 4,-1.9 0, 0.0 3,-0.3 -0.168 37.1-111.7 -58.3 156.1 -19.0 71.3 5.7 31 142 A K H > S+ 0 0 88 1,-0.2 4,-3.6 2,-0.2 5,-0.2 0.832 116.1 59.6 -53.0 -36.2 -16.1 69.0 5.4 32 143 A K H > S+ 0 0 151 2,-0.2 4,-2.5 1,-0.2 -1,-0.2 0.952 105.3 47.5 -63.4 -43.7 -18.5 66.1 4.5 33 144 A T H > S+ 0 0 52 -3,-0.3 4,-1.7 1,-0.2 -1,-0.2 0.919 115.4 46.6 -63.2 -43.1 -19.9 67.9 1.5 34 145 A L H X S+ 0 0 0 -4,-1.9 4,-3.3 1,-0.2 -2,-0.2 0.950 111.5 49.8 -62.1 -51.3 -16.3 68.8 0.4 35 146 A N H X S+ 0 0 30 -4,-3.6 4,-3.1 1,-0.2 5,-0.3 0.866 105.4 57.4 -59.6 -37.1 -15.0 65.3 0.9 36 147 A Q H X S+ 0 0 113 -4,-2.5 4,-1.1 -5,-0.2 -1,-0.2 0.954 115.3 37.4 -56.9 -47.9 -17.9 63.7 -1.1 37 148 A V H X S+ 0 0 15 -4,-1.7 4,-2.9 -5,-0.2 3,-0.3 0.947 117.3 51.6 -69.1 -45.0 -16.9 65.9 -4.1 38 149 A L H X S+ 0 0 0 -4,-3.3 4,-2.5 1,-0.2 5,-0.2 0.897 108.8 48.7 -62.7 -40.3 -13.1 65.6 -3.5 39 150 A Y H X S+ 0 0 119 -4,-3.1 4,-1.3 2,-0.2 -1,-0.2 0.808 113.1 48.0 -73.7 -26.8 -13.1 61.8 -3.3 40 151 A R H X S+ 0 0 135 -4,-1.1 4,-1.4 -3,-0.3 -2,-0.2 0.894 109.7 51.8 -78.1 -40.0 -15.2 61.5 -6.5 41 152 A L H <>S+ 0 0 0 -4,-2.9 5,-2.3 2,-0.2 6,-0.7 0.925 108.9 51.0 -62.2 -38.7 -12.8 64.0 -8.2 42 153 A K H ><5S+ 0 0 101 -4,-2.5 3,-1.2 1,-0.2 -2,-0.2 0.941 109.2 54.1 -62.0 -36.3 -9.5 61.7 -7.0 43 154 A K H 3<5S+ 0 0 179 -4,-1.3 -1,-0.2 1,-0.3 -2,-0.2 0.868 108.9 45.2 -64.3 -36.0 -11.4 58.7 -8.5 44 155 A E T 3<5S- 0 0 100 -4,-1.4 -1,-0.3 -3,-0.3 -2,-0.2 0.404 115.2-122.9 -83.1 -2.9 -11.7 60.7 -11.8 45 156 A D T < 5S+ 0 0 101 -3,-1.2 14,-0.9 -4,-0.3 -3,-0.2 0.821 79.9 121.0 60.8 35.0 -8.0 61.6 -11.4 46 157 A R S S-B 54 0A 50 3,-0.5 3,-2.3 -3,-0.1 -3,-0.0 -0.971 101.1 -62.5-159.1 161.9 -1.5 63.3 2.4 52 163 A P T 3 S+ 0 0 112 0, 0.0 3,-0.1 0, 0.0 -3,-0.0 -0.297 123.6 12.9 -53.4 135.8 -4.6 62.8 4.5 53 164 A K T 3 S+ 0 0 113 1,-0.2 -33,-2.7 -34,-0.1 2,-0.3 0.289 109.4 102.8 84.0 -10.9 -6.7 66.0 4.7 54 165 A Y E < -AB 19 51A 97 -3,-2.3 -3,-0.5 -35,-0.2 2,-0.3 -0.872 49.0-169.8-111.8 145.2 -4.7 67.6 1.9 55 166 A W E -A 18 0A 1 -37,-1.9 -37,-1.9 -2,-0.3 2,-0.3 -0.957 2.6-174.7-134.0 147.0 -5.8 68.1 -1.7 56 167 A S E - B 0 48A 21 -8,-2.3 -8,-2.5 -2,-0.3 2,-0.1 -0.992 33.1 -98.4-147.6 148.5 -3.9 69.2 -4.8 57 168 A I E S+ B 0 47A 60 -46,-0.4 -10,-0.2 -2,-0.3 -11,-0.0 -0.436 86.8 28.4 -72.3 141.6 -4.8 70.0 -8.4 58 169 A G 0 0 37 -12,-1.9 -12,-0.2 -2,-0.1 -2,-0.1 0.325 360.0 360.0 88.3 143.8 -4.2 67.2 -10.9 59 170 A G 0 0 84 -14,-0.9 -11,-0.2 -15,-0.1 -17,-0.1 -0.777 360.0 360.0-143.2 360.0 -4.1 63.3 -10.6 60 !* 0 0 0 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 360.0 0.0 0.0 0.0 61 112 D D 0 0 119 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 85.2 -33.2 53.5 27.6 62 113 D N - 0 0 133 35,-0.0 35,-0.0 0, 0.0 0, 0.0 0.781 360.0 -55.1 -63.2 -34.7 -32.7 55.7 24.6 63 114 D L S > S+ 0 0 16 34,-0.0 4,-2.2 31,-0.0 5,-0.2 0.019 125.6 105.4 176.8 -14.4 -31.8 52.3 23.2 64 115 D E H > S+ 0 0 25 1,-0.2 4,-2.2 2,-0.2 5,-0.1 0.818 75.6 43.8 -65.6 -47.4 -29.2 51.6 25.9 65 116 D Q H > S+ 0 0 102 2,-0.2 4,-2.5 1,-0.2 -1,-0.2 0.790 112.5 54.0 -70.4 -31.3 -30.9 49.0 28.2 66 117 D K H > S+ 0 0 57 2,-0.2 4,-2.9 -3,-0.2 5,-0.2 0.951 110.6 46.6 -65.1 -47.3 -32.3 47.0 25.3 67 118 D I H X S+ 0 0 0 -4,-2.2 4,-2.4 1,-0.2 5,-0.2 0.943 115.6 45.9 -57.0 -48.7 -28.7 46.7 23.8 68 119 D L H X S+ 0 0 21 -4,-2.2 4,-2.2 1,-0.2 -1,-0.2 0.895 114.1 49.1 -63.4 -38.5 -27.4 45.8 27.3 69 120 D Q H X S+ 0 0 107 -4,-2.5 4,-2.2 2,-0.2 -2,-0.2 0.881 110.6 49.8 -68.1 -37.5 -30.3 43.3 27.8 70 121 D V H X S+ 0 0 34 -4,-2.9 4,-2.0 2,-0.2 -2,-0.2 0.933 113.5 45.2 -67.6 -42.5 -29.7 41.7 24.3 71 122 D L H X S+ 0 0 0 -4,-2.4 4,-2.3 -5,-0.2 46,-0.3 0.920 112.2 53.7 -66.0 -41.0 -26.0 41.3 25.0 72 123 D S H < S+ 0 0 55 -4,-2.2 -2,-0.2 -5,-0.2 -1,-0.2 0.879 108.8 46.6 -61.0 -44.5 -26.8 40.0 28.4 73 124 D D H < S+ 0 0 119 -4,-2.2 -1,-0.2 1,-0.2 -2,-0.2 0.903 113.0 49.8 -68.6 -40.8 -29.2 37.2 27.3 74 125 D D H < S- 0 0 100 -4,-2.0 -2,-0.2 -5,-0.2 -1,-0.2 0.928 85.2-161.5 -63.3 -45.5 -26.9 36.1 24.6 75 126 D G < + 0 0 60 -4,-2.3 -1,-0.1 1,-0.3 -3,-0.1 0.250 61.5 63.9 83.6 -14.6 -23.8 35.8 26.9 76 127 D G S S- 0 0 18 -5,-0.2 41,-0.3 1,-0.1 -1,-0.3 -0.565 102.1 -51.9-127.0-168.5 -21.4 35.8 24.0 77 128 D P - 0 0 79 0, 0.0 2,-0.4 0, 0.0 39,-0.2 -0.540 52.1-159.0 -71.2 132.7 -20.2 38.0 21.1 78 129 D V E -C 115 0B 9 37,-3.2 37,-1.7 -2,-0.2 2,-0.0 -0.973 16.3-123.0-116.3 127.8 -23.1 39.4 19.0 79 130 D A E >> -C 114 0B 28 -2,-0.4 4,-1.6 35,-0.2 3,-0.8 -0.341 23.2-119.2 -65.7 143.7 -22.6 40.6 15.4 80 131 D I H 3> S+ 0 0 7 33,-2.6 4,-1.7 1,-0.3 -1,-0.1 0.853 114.2 57.1 -55.1 -31.4 -23.7 44.2 14.8 81 132 D F H 3> S+ 0 0 123 2,-0.2 4,-2.5 1,-0.2 -1,-0.3 0.876 100.5 55.0 -71.3 -34.1 -26.2 42.9 12.2 82 133 D Q H <> S+ 0 0 73 -3,-0.8 4,-1.8 1,-0.2 -1,-0.2 0.844 109.0 50.9 -63.2 -32.6 -27.9 40.6 14.8 83 134 D L H X S+ 0 0 0 -4,-1.6 4,-2.6 2,-0.2 5,-0.4 0.835 106.1 53.8 -71.7 -33.5 -28.3 43.8 16.8 84 135 D V H X S+ 0 0 33 -4,-1.7 4,-2.1 -5,-0.2 5,-0.5 0.974 113.3 42.4 -61.1 -51.0 -29.9 45.6 13.7 85 136 D K H < S+ 0 0 96 -4,-2.5 -2,-0.2 1,-0.2 -1,-0.2 0.851 118.8 45.9 -63.0 -35.8 -32.5 42.8 13.3 86 137 D K H < S+ 0 0 115 -4,-1.8 -1,-0.2 -5,-0.2 -2,-0.2 0.879 122.7 31.4 -79.3 -41.1 -33.1 42.6 17.1 87 138 D C H < S- 0 0 14 -4,-2.6 -2,-0.2 2,-0.2 -3,-0.2 0.671 94.2-139.3 -90.2 -17.7 -33.4 46.3 18.0 88 139 D Q < + 0 0 174 -4,-2.1 -3,-0.1 -5,-0.4 -4,-0.1 0.871 62.1 115.3 58.8 41.0 -34.8 47.3 14.6 89 140 D V S S- 0 0 49 -5,-0.5 -1,-0.2 -6,-0.3 -2,-0.2 -0.950 72.5 -80.7-135.5 155.2 -32.7 50.5 14.4 90 141 D P > - 0 0 82 0, 0.0 4,-1.8 0, 0.0 5,-0.2 -0.137 35.1-117.7 -57.5 150.1 -29.9 51.7 11.9 91 142 D K H > S+ 0 0 104 1,-0.2 4,-3.2 2,-0.2 5,-0.2 0.872 113.9 55.4 -48.4 -45.6 -26.3 50.5 12.3 92 143 D K H > S+ 0 0 148 1,-0.2 4,-2.8 2,-0.2 -1,-0.2 0.944 107.7 47.6 -57.7 -50.9 -25.1 54.1 12.9 93 144 D T H > S+ 0 0 48 2,-0.2 4,-1.3 1,-0.2 -1,-0.2 0.835 114.5 46.9 -58.0 -40.4 -27.6 54.7 15.8 94 145 D L H X S+ 0 0 0 -4,-1.8 4,-3.2 2,-0.2 -2,-0.2 0.923 112.2 50.2 -67.7 -46.7 -26.5 51.3 17.4 95 146 D N H X S+ 0 0 39 -4,-3.2 4,-2.8 1,-0.2 5,-0.3 0.866 105.3 57.2 -60.9 -41.8 -22.8 52.1 16.9 96 147 D Q H X S+ 0 0 121 -4,-2.8 4,-1.3 -5,-0.2 -1,-0.2 0.915 115.6 37.0 -50.5 -46.1 -23.2 55.6 18.5 97 148 D V H X S+ 0 0 14 -4,-1.3 4,-2.8 -5,-0.2 -2,-0.2 0.896 116.6 52.5 -79.4 -37.6 -24.6 53.8 21.6 98 149 D L H X S+ 0 0 0 -4,-3.2 4,-2.6 2,-0.2 -2,-0.2 0.929 111.0 45.1 -63.6 -49.5 -22.2 50.8 21.4 99 150 D Y H X S+ 0 0 137 -4,-2.8 4,-1.8 2,-0.2 -1,-0.2 0.841 113.3 52.1 -61.9 -34.6 -19.0 52.9 21.2 100 151 D R H X S+ 0 0 82 -4,-1.3 4,-1.3 -5,-0.3 -2,-0.2 0.946 111.6 46.6 -62.3 -49.1 -20.3 55.2 24.0 101 152 D L H ><>S+ 0 0 0 -4,-2.8 5,-2.8 1,-0.2 6,-0.5 0.921 109.7 54.8 -58.4 -43.5 -20.9 52.1 26.1 102 153 D K H ><5S+ 0 0 32 -4,-2.6 3,-1.1 1,-0.3 -1,-0.2 0.874 107.7 48.5 -59.4 -41.6 -17.5 50.8 25.2 103 154 D K H 3<5S+ 0 0 169 -4,-1.8 -1,-0.3 1,-0.2 -2,-0.2 0.714 109.7 52.6 -72.2 -22.5 -15.8 54.0 26.4 104 155 D E T <<5S- 0 0 83 -4,-1.3 -1,-0.2 -3,-0.5 -2,-0.2 0.352 117.3-117.1 -89.8 6.1 -17.8 53.7 29.7 105 156 D D T < 5S+ 0 0 135 -3,-1.1 -3,-0.2 -4,-0.2 -2,-0.1 0.718 83.6 118.4 66.5 26.3 -16.5 50.1 30.0 106 157 D R S S- 0 0 49 3,-0.4 3,-2.3 -3,-0.1 -3,-0.0 -0.948 104.7 -62.4-149.5 163.0 -13.4 41.6 17.2 112 163 D P T 3 S+ 0 0 107 0, 0.0 3,-0.1 0, 0.0 -33,-0.0 -0.278 121.1 4.5 -53.4 132.8 -14.5 44.0 14.5 113 164 D K T 3 S+ 0 0 134 1,-0.2 -33,-2.6 -34,-0.1 2,-0.3 0.399 109.2 105.8 75.7 2.2 -18.3 44.3 14.2 114 165 D Y E < -C 79 0B 98 -3,-2.3 -3,-0.4 -35,-0.2 2,-0.3 -0.889 46.0-173.6-114.3 151.2 -18.9 42.0 17.3 115 166 D W E +C 78 0B 1 -37,-1.7 -37,-3.2 -2,-0.3 2,-0.3 -0.937 4.3 178.9-140.1 149.7 -20.0 43.2 20.8 116 167 D S E -D 108 0C 22 -8,-2.1 -8,-2.2 -2,-0.3 -44,-0.1 -0.992 37.2 -84.6-152.0 161.2 -20.4 41.5 24.2 117 168 D I E D 107 0C 70 -46,-0.3 -10,-0.2 -2,-0.3 -11,-0.1 -0.321 360.0 360.0 -69.5 144.1 -21.5 42.5 27.7 118 169 D G 0 0 56 -12,-1.9 -2,-0.2 -2,-0.0 -12,-0.2 0.083 360.0 360.0 90.7 360.0 -18.9 43.9 30.0