==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=2-AUG-2013 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER PLANT PROTEIN 03-OCT-12 4HE7 . COMPND 2 MOLECULE: DEFENSIN-LIKE PROTEIN; . SOURCE 2 ORGANISM_SCIENTIFIC: PENTADIPLANDRA BRAZZEANA; . AUTHOR K.NAGATA,N.HONGO,Y.KAMEDA,A.YAMAMURA,H.SASAKI,W.C.LEE,K.ISHI . 54 1 4 4 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 4293.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 30 55.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 11 20.4 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 1 1.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 3 5.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 4 7.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 10 18.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A X 0 0 158 0, 0.0 3,-0.4 0, 0.0 51,-0.0 0.000 360.0 360.0 360.0 123.5 59.0 13.6 3.6 2 2 A D + 0 0 167 1,-0.2 3,-0.2 2,-0.1 0, 0.0 0.591 360.0 53.1 -89.3 -11.8 58.2 10.8 1.2 3 3 A K + 0 0 164 1,-0.1 -1,-0.2 48,-0.0 48,-0.2 -0.338 61.7 123.8-125.0 45.9 57.3 8.4 4.0 4 4 A a S S+ 0 0 31 -3,-0.4 47,-4.4 46,-0.1 48,-0.3 0.940 74.9 40.8 -68.7 -42.8 54.7 10.2 6.2 5 5 A K E +A 50 0A 105 45,-0.3 2,-0.3 -3,-0.2 45,-0.2 -0.650 61.3 170.9-109.6 155.8 52.1 7.5 5.8 6 6 A K E -A 49 0A 113 43,-2.0 43,-2.4 -2,-0.2 -3,-0.0 -0.836 33.0-111.2-167.8 124.9 52.3 3.7 5.9 7 7 A V E -A 48 0A 38 -2,-0.3 2,-0.8 41,-0.3 41,-0.2 -0.212 18.7-132.5 -56.2 146.4 49.7 1.0 6.0 8 8 A Y > - 0 0 41 39,-2.8 3,-1.2 3,-0.0 39,-0.5 -0.919 38.0-137.2 -93.5 102.0 49.3 -1.2 9.2 9 9 A E T 3 S+ 0 0 92 -2,-0.8 37,-0.0 1,-0.3 39,-0.0 -0.462 76.4 7.2 -79.3 143.0 49.3 -4.5 7.2 10 10 A N T 3 S+ 0 0 165 1,-0.2 -1,-0.3 -2,-0.1 3,-0.0 0.732 84.4 159.8 63.4 27.2 46.8 -7.2 8.3 11 11 A Y < - 0 0 20 -3,-1.2 -1,-0.2 1,-0.1 36,-0.1 -0.642 52.8 -94.7 -78.4 134.3 45.1 -4.8 10.7 12 12 A P > - 0 0 60 0, 0.0 4,-1.6 0, 0.0 -1,-0.1 -0.259 23.6-148.0 -55.4 129.2 41.6 -6.0 11.4 13 13 A V H > S+ 0 0 73 2,-0.2 4,-1.1 1,-0.2 -2,-0.0 0.846 98.6 58.9 -61.6 -38.2 38.9 -4.5 9.2 14 14 A S H 4 S+ 0 0 81 1,-0.2 3,-0.5 2,-0.2 4,-0.3 0.912 107.5 46.9 -59.7 -43.7 36.4 -4.8 12.1 15 15 A K H >4 S+ 0 0 61 1,-0.2 3,-1.1 2,-0.2 7,-0.4 0.829 103.9 62.3 -66.8 -35.4 38.7 -2.6 14.3 16 16 A b H 3< S+ 0 0 12 -4,-1.6 -1,-0.2 1,-0.2 21,-0.2 0.867 99.4 55.7 -55.4 -35.5 39.1 -0.2 11.4 17 17 A Q T 3< S+ 0 0 134 -4,-1.1 2,-0.3 -3,-0.5 -1,-0.2 0.579 95.9 81.7 -73.4 -12.1 35.4 0.5 11.5 18 18 A L S X S- 0 0 104 -3,-1.1 3,-0.9 -4,-0.3 4,-0.4 -0.738 89.8 -91.7-105.8 146.3 35.3 1.5 15.2 19 19 A A T 3 S- 0 0 84 -2,-0.3 2,-0.5 1,-0.2 -1,-0.1 -0.153 99.0 -4.2 -55.0 136.3 36.2 4.9 16.8 20 20 A N T 3> S+ 0 0 87 1,-0.1 4,-2.6 15,-0.1 5,-0.3 0.121 97.4 110.8 79.8 -17.3 39.9 5.5 18.0 21 21 A Q H <> S+ 0 0 66 -3,-0.9 4,-2.2 -2,-0.5 5,-0.2 0.927 80.9 35.6 -62.3 -60.4 41.2 2.0 17.2 22 22 A c H > S+ 0 0 5 -4,-0.4 4,-1.9 -7,-0.4 -1,-0.2 0.852 119.1 53.6 -57.4 -42.7 43.6 2.5 14.3 23 23 A N H > S+ 0 0 41 2,-0.2 4,-1.9 1,-0.2 -2,-0.2 0.983 115.1 36.5 -57.8 -58.2 44.6 5.9 15.7 24 24 A Y H X S+ 0 0 132 -4,-2.6 4,-3.6 1,-0.2 -2,-0.2 0.830 116.8 52.6 -69.1 -32.7 45.6 4.7 19.2 25 25 A D H X S+ 0 0 26 -4,-2.2 4,-3.5 -5,-0.3 5,-0.5 0.855 107.1 53.9 -70.3 -38.4 47.1 1.3 17.9 26 26 A d H X S+ 0 0 0 -4,-1.9 6,-1.6 -5,-0.2 4,-1.5 0.939 115.2 40.3 -58.2 -47.9 49.2 3.2 15.4 27 27 A K H X S+ 0 0 78 -4,-1.9 4,-1.1 4,-0.2 -2,-0.2 0.945 122.7 40.2 -65.3 -51.7 50.5 5.2 18.4 28 28 A L H < S+ 0 0 129 -4,-3.6 -2,-0.2 1,-0.2 -3,-0.2 0.956 126.7 30.4 -60.2 -53.2 50.7 2.3 20.8 29 29 A D H < S+ 0 0 76 -4,-3.5 -3,-0.2 -5,-0.2 -1,-0.2 0.700 134.8 24.6 -85.9 -24.1 52.1 -0.4 18.4 30 30 A K H < S- 0 0 61 -4,-1.5 -3,-0.2 -5,-0.5 -2,-0.1 0.449 93.2-124.4-123.6 -4.6 54.1 1.7 16.0 31 31 A H < + 0 0 165 -4,-1.1 -4,-0.2 -5,-0.3 -3,-0.1 0.559 59.7 154.2 64.2 16.8 55.0 4.8 18.0 32 32 A A - 0 0 9 -6,-1.6 19,-0.2 -7,-0.1 -1,-0.2 -0.086 56.0-120.9 -72.4 168.6 53.4 6.8 15.2 33 33 A R S S- 0 0 105 17,-1.5 2,-0.3 1,-0.2 18,-0.2 0.836 82.2 -29.1 -78.9 -30.3 51.9 10.2 15.6 34 34 A S E -B 50 0A 10 16,-1.7 16,-2.6 20,-0.2 2,-0.3 -0.932 53.1-149.0-167.4 172.1 48.5 9.2 14.4 35 35 A G E -B 49 0A 6 -2,-0.3 2,-0.3 14,-0.3 14,-0.2 -0.961 7.6-175.5-155.9 161.1 46.4 6.8 12.2 36 36 A E E -B 48 0A 109 12,-2.1 12,-2.4 -2,-0.3 2,-0.4 -0.990 26.3-118.2-148.7 150.1 43.2 6.7 10.3 37 37 A b E +B 47 0A 39 -2,-0.3 2,-0.3 -21,-0.2 10,-0.2 -0.723 39.1 162.8 -90.9 131.7 41.1 4.1 8.3 38 38 A F E -B 46 0A 85 8,-2.1 8,-2.4 -2,-0.4 2,-0.1 -0.973 36.6-114.0-137.3 149.7 40.6 4.8 4.5 39 39 A Y E -B 45 0A 150 -2,-0.3 6,-0.2 6,-0.2 2,-0.2 -0.482 28.0-142.7 -71.3 159.8 39.5 2.8 1.6 40 40 A D > - 0 0 48 4,-0.8 3,-1.7 -2,-0.1 -1,-0.0 -0.473 39.0 -83.2-107.0-174.4 41.9 2.2 -1.2 41 41 A E T 3 S+ 0 0 142 1,-0.3 -2,-0.0 -2,-0.2 0, 0.0 0.781 129.6 56.9 -71.8 -25.4 41.1 2.1 -4.9 42 42 A K T 3 S- 0 0 159 2,-0.1 -1,-0.3 1,-0.0 -3,-0.0 0.263 120.0-112.0 -81.5 10.9 40.0 -1.6 -4.7 43 43 A R S < S+ 0 0 178 -3,-1.7 2,-0.4 1,-0.2 -2,-0.1 0.790 71.5 130.7 60.3 39.4 37.5 -0.4 -2.0 44 44 A N - 0 0 84 -6,-0.0 -4,-0.8 -4,-0.0 2,-0.2 -0.976 57.4-111.6-123.2 142.9 38.8 -2.1 1.0 45 45 A L E + B 0 39A 44 -2,-0.4 2,-0.3 -6,-0.2 -6,-0.2 -0.411 36.1 176.6 -68.9 131.8 39.5 -0.5 4.4 46 46 A Q E - B 0 38A 63 -8,-2.4 -8,-2.1 -2,-0.2 2,-0.6 -0.963 30.9-124.5-132.6 150.1 43.0 -0.1 5.7 47 47 A c E - B 0 37A 0 -39,-0.5 -39,-2.8 -2,-0.3 2,-0.7 -0.818 28.7-165.1 -91.2 116.8 44.6 1.4 8.8 48 48 A I E -AB 7 36A 22 -12,-2.4 -12,-2.1 -2,-0.6 -41,-0.3 -0.904 5.2-152.2-114.7 113.8 47.2 4.0 7.7 49 49 A d E -AB 6 35A 0 -43,-2.4 -43,-2.0 -2,-0.7 2,-0.4 -0.517 6.7-148.9 -83.0 148.6 49.6 5.2 10.3 50 50 A D E -AB 5 34A 12 -16,-2.6 -16,-1.7 -45,-0.2 -17,-1.5 -0.994 15.8-176.2-123.0 126.7 51.1 8.6 9.9 51 51 A Y S S+ 0 0 89 -47,-4.4 -46,-0.1 -2,-0.4 3,-0.1 0.227 81.8 47.1-104.6 9.7 54.6 9.4 11.1 52 52 A a S S+ 0 0 36 -48,-0.3 2,-0.4 1,-0.3 -1,-0.1 0.643 108.3 41.1-117.2 -35.3 54.5 13.2 10.4 53 53 A E 0 0 134 -49,-0.2 -1,-0.3 -19,-0.1 -3,-0.1 -0.953 360.0 360.0-132.1 147.4 51.3 14.5 11.7 54 54 A Y 0 0 200 -2,-0.4 -20,-0.2 -3,-0.1 -21,-0.1 -0.304 360.0 360.0 -86.0 360.0 49.1 14.1 14.8