==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=3-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER CHEMOKINE 01-DEC-00 1HFG . COMPND 2 MOLECULE: VIRAL MACROPHAGE INFLAMMATORY PROTEIN-II; . SOURCE 2 SYNTHETIC: YES; . AUTHOR M.P.CRUMP,E.ELISSEEVA,J.-H.GONG,I.CLARK-LEWIS,B.D.SYKES . 71 1 2 2 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 5866.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 34 47.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 10 14.1 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 1 1.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 10 14.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 4 5.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 6 8.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A L 0 0 197 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0-160.0 3.2 -21.4 -15.1 2 2 A G - 0 0 64 1,-0.0 4,-0.1 3,-0.0 0, 0.0 0.946 360.0 -11.3 78.6 84.3 3.3 -20.1 -18.7 3 3 A A S > S+ 0 0 54 1,-0.1 3,-2.6 2,-0.1 4,-0.2 0.898 79.3 168.1 62.7 40.4 3.3 -16.3 -18.6 4 4 A S G > + 0 0 60 1,-0.3 3,-2.8 2,-0.2 -1,-0.1 0.773 65.7 77.2 -55.6 -25.5 2.5 -16.4 -14.9 5 5 A W G 3 S+ 0 0 201 1,-0.3 -1,-0.3 3,-0.1 -2,-0.1 0.795 76.4 74.8 -56.0 -27.0 3.3 -12.7 -15.0 6 6 A H G < S+ 0 0 129 -3,-2.6 -1,-0.3 1,-0.1 -2,-0.2 0.681 84.3 77.1 -59.8 -15.6 -0.1 -12.2 -16.6 7 7 A R S < S- 0 0 166 -3,-2.8 2,-1.6 -4,-0.2 -1,-0.1 -0.846 74.0-156.2-102.3 104.1 -1.4 -12.9 -13.0 8 8 A P - 0 0 80 0, 0.0 2,-4.1 0, 0.0 3,-0.3 -0.584 2.9-163.1 -81.1 85.0 -0.9 -9.7 -10.8 9 9 A D + 0 0 107 -2,-1.6 -2,-0.0 1,-0.2 22,-0.0 -0.252 38.5 142.7 -66.5 61.4 -0.8 -11.2 -7.4 10 10 A K + 0 0 88 -2,-4.1 2,-2.9 1,-0.2 29,-0.3 0.585 40.1 98.9 -79.1 -9.7 -1.5 -7.8 -5.9 11 11 A a S S- 0 0 22 -3,-0.3 -1,-0.2 27,-0.1 26,-0.2 -0.290 73.0-155.4 -75.2 57.8 -3.7 -9.5 -3.3 12 12 A b - 0 0 39 -2,-2.9 -2,-0.1 1,-0.2 28,-0.1 -0.055 10.4-148.8 -38.1 120.7 -0.8 -9.3 -0.8 13 13 A L S S+ 0 0 132 25,-0.1 2,-0.3 26,-0.0 -1,-0.2 0.884 84.6 33.8 -63.2 -37.0 -1.4 -12.1 1.7 14 14 A G S S- 0 0 52 38,-0.0 2,-0.3 2,-0.0 37,-0.1 -0.785 79.9-139.4-116.9 160.8 0.3 -9.9 4.3 15 15 A Y - 0 0 44 -2,-0.3 37,-0.2 1,-0.1 26,-0.1 -0.751 36.8 -90.5-118.2 166.5 0.4 -6.2 4.8 16 16 A Q - 0 0 70 35,-3.7 36,-0.1 -2,-0.3 -1,-0.1 0.871 45.1-159.2 -36.6 -53.5 3.0 -3.6 5.8 17 17 A K + 0 0 171 34,-0.2 -1,-0.2 1,-0.2 35,-0.1 0.188 65.3 76.7 87.4 -16.6 2.1 -4.1 9.4 18 18 A R S S- 0 0 178 40,-0.0 2,-0.6 0, 0.0 -1,-0.2 -0.949 86.9-112.1-127.8 147.6 3.6 -0.7 10.2 19 19 A P - 0 0 94 0, 0.0 40,-0.0 0, 0.0 0, 0.0 -0.675 32.7-157.4 -82.2 116.2 2.4 2.8 9.5 20 20 A L - 0 0 37 -2,-0.6 2,-0.3 1,-0.1 5,-0.0 -0.589 21.9-105.3 -92.0 154.8 4.4 4.7 6.9 21 21 A P > - 0 0 78 0, 0.0 3,-1.2 0, 0.0 4,-0.4 -0.617 11.1-146.0 -82.3 133.9 4.7 8.5 6.6 22 22 A Q T 3 S+ 0 0 69 -2,-0.3 -2,-0.0 1,-0.3 0, 0.0 0.489 84.8 93.9 -74.9 -1.5 2.8 10.2 3.8 23 23 A V T 3 S+ 0 0 110 1,-0.2 -1,-0.3 0, 0.0 -3,-0.0 0.769 103.9 20.1 -61.6 -25.2 5.7 12.7 3.7 24 24 A L S < S+ 0 0 60 -3,-1.2 21,-2.7 21,-0.0 22,-0.5 0.344 105.9 105.8-123.9 0.9 7.2 10.5 1.0 25 25 A L - 0 0 3 -4,-0.4 19,-0.2 19,-0.3 3,-0.1 -0.402 43.3-173.3 -81.1 160.5 4.1 8.6 -0.2 26 26 A S - 0 0 53 1,-0.4 2,-0.2 17,-0.4 18,-0.2 0.697 51.3 -47.4-115.5 -71.8 2.4 9.3 -3.5 27 27 A S E -A 43 0A 26 16,-1.2 16,-0.9 39,-0.1 -1,-0.4 -0.679 47.1-117.7-147.6-158.9 -0.9 7.4 -3.9 28 28 A W E -A 42 0A 35 14,-0.2 41,-1.4 -2,-0.2 14,-0.2 -0.967 11.1-154.2-158.4 140.0 -2.4 4.0 -3.6 29 29 A Y E -A 41 0A 25 12,-2.4 12,-2.2 -2,-0.3 2,-0.2 -0.943 20.8-124.5-120.4 139.4 -4.1 1.5 -5.9 30 30 A P E -A 40 0A 77 0, 0.0 10,-0.2 0, 0.0 2,-0.1 -0.506 22.0-133.4 -81.3 147.7 -6.7 -1.2 -5.0 31 31 A T - 0 0 23 8,-1.6 -22,-0.1 1,-0.2 4,-0.1 -0.222 37.1 -72.0 -88.8-177.5 -6.2 -4.9 -5.7 32 32 A S - 0 0 71 -24,-0.3 -1,-0.2 1,-0.1 3,-0.2 -0.176 29.4-134.4 -70.6 168.7 -8.6 -7.4 -7.2 33 33 A Q S S+ 0 0 176 1,-0.2 2,-0.8 4,-0.1 -1,-0.1 0.532 91.4 82.9-100.8 -10.6 -11.6 -8.7 -5.3 34 34 A L S S+ 0 0 153 3,-0.1 2,-0.3 2,-0.0 -1,-0.2 -0.228 74.5 105.3 -88.1 46.6 -11.0 -12.3 -6.4 35 35 A a S S- 0 0 28 -2,-0.8 -23,-0.0 -3,-0.2 -26,-0.0 -0.875 81.0-120.3-125.6 158.6 -8.5 -12.8 -3.6 36 36 A S S S- 0 0 123 -2,-0.3 -1,-0.1 1,-0.2 -3,-0.0 0.776 110.0 -5.5 -65.9 -25.3 -8.5 -14.6 -0.2 37 37 A K S S- 0 0 107 -26,-0.2 -1,-0.2 -23,-0.0 2,-0.2 -0.289 80.6-179.0-170.0 72.0 -7.8 -11.2 1.4 38 38 A P + 0 0 44 0, 0.0 -27,-0.1 0, 0.0 -25,-0.1 -0.567 11.1 156.5 -81.7 140.7 -7.1 -8.3 -1.0 39 39 A G - 0 0 9 -29,-0.3 -8,-1.6 -2,-0.2 2,-0.3 0.112 43.1 -70.0-126.5-119.2 -6.3 -4.9 0.3 40 40 A V E -AB 30 52A 7 12,-3.3 12,-3.3 -10,-0.2 2,-0.3 -0.970 29.5-140.7-154.8 136.2 -4.5 -1.9 -1.3 41 41 A I E -AB 29 51A 3 -12,-2.2 -12,-2.4 -2,-0.3 2,-0.5 -0.759 14.6-141.6 -99.3 143.8 -0.9 -1.2 -2.2 42 42 A F E -AB 28 50A 0 8,-2.7 8,-1.3 -2,-0.3 2,-1.0 -0.907 4.3-153.4-108.3 125.4 0.8 2.2 -1.7 43 43 A L E -AB 27 49A 47 -16,-0.9 -16,-1.2 -2,-0.5 -17,-0.4 -0.792 19.0-144.3 -99.6 96.3 3.2 3.5 -4.4 44 44 A T - 0 0 19 4,-2.4 -19,-0.3 -2,-1.0 -22,-0.1 -0.030 26.0-105.1 -52.2 161.1 5.6 5.8 -2.6 45 45 A K S S- 0 0 134 -21,-2.7 -20,-0.1 1,-0.2 -1,-0.1 0.954 106.5 -16.5 -54.7 -54.7 6.8 8.9 -4.5 46 46 A R S S+ 0 0 238 -22,-0.5 -1,-0.2 2,-0.1 -21,-0.1 0.319 128.2 78.0-133.0 0.7 10.2 7.4 -5.2 47 47 A G S S- 0 0 47 -23,-0.4 2,-0.2 1,-0.2 -22,-0.1 0.772 87.9 -86.5 -78.0-110.5 10.3 4.6 -2.6 48 48 A R - 0 0 212 -6,-0.1 -4,-2.4 0, 0.0 2,-0.2 -0.832 44.7 -65.2-151.3-171.6 8.4 1.4 -3.4 49 49 A Q E -B 43 0A 128 -2,-0.2 2,-0.4 -6,-0.2 -6,-0.2 -0.585 39.6-165.0 -87.4 149.4 5.1 -0.3 -3.2 50 50 A V E -B 42 0A 16 -8,-1.3 -8,-2.7 -2,-0.2 2,-0.3 -0.936 13.7-140.0-140.7 115.7 3.5 -1.2 0.2 51 51 A b E +B 41 0A 22 -2,-0.4 -35,-3.7 -10,-0.3 2,-0.3 -0.565 35.7 160.8 -75.0 129.1 0.6 -3.6 0.6 52 52 A A E -B 40 0A 0 -12,-3.3 -12,-3.3 -2,-0.3 2,-0.6 -0.963 37.4-123.8-146.4 162.2 -1.9 -2.4 3.2 53 53 A D > - 0 0 36 -2,-0.3 3,-3.6 -14,-0.2 6,-0.3 -0.938 13.6-142.4-114.3 117.5 -5.5 -2.9 4.4 54 54 A K T 3 S+ 0 0 132 -2,-0.6 -1,-0.1 1,-0.3 6,-0.1 0.780 100.9 74.5 -44.2 -27.1 -7.8 0.1 4.5 55 55 A S T 3 S+ 0 0 110 4,-0.1 -1,-0.3 5,-0.1 5,-0.1 0.862 83.0 83.5 -55.9 -36.4 -9.1 -1.7 7.6 56 56 A K S < S- 0 0 77 -3,-3.6 -4,-0.0 1,-0.1 0, 0.0 0.272 86.6-121.3 -52.4-169.2 -5.9 -0.6 9.4 57 57 A D S > S+ 0 0 139 2,-0.1 4,-1.9 3,-0.1 3,-0.4 0.810 106.1 39.4-106.0 -53.6 -5.7 2.9 10.9 58 58 A W H > S+ 0 0 38 1,-0.2 4,-1.8 2,-0.2 5,-0.1 0.801 114.6 57.1 -68.5 -27.5 -2.7 4.6 9.2 59 59 A V H > S+ 0 0 0 -6,-0.3 4,-1.4 2,-0.2 -1,-0.2 0.786 105.9 51.0 -72.7 -26.9 -3.8 3.0 5.9 60 60 A K H > S+ 0 0 133 -3,-0.4 4,-1.4 2,-0.2 -2,-0.2 0.921 107.6 50.6 -75.3 -45.8 -7.2 4.7 6.3 61 61 A K H X S+ 0 0 150 -4,-1.9 4,-2.6 1,-0.2 3,-0.4 0.919 108.6 53.2 -57.8 -44.9 -5.7 8.1 6.9 62 62 A L H X S+ 0 0 9 -4,-1.8 4,-4.4 1,-0.2 -1,-0.2 0.925 101.4 59.5 -56.4 -46.2 -3.6 7.8 3.8 63 63 A M H < S+ 0 0 40 -4,-1.4 -1,-0.2 1,-0.3 -2,-0.2 0.880 114.2 37.2 -49.9 -40.8 -6.6 6.9 1.7 64 64 A Q H < S+ 0 0 170 -4,-1.4 -1,-0.3 -3,-0.4 -2,-0.2 0.784 117.2 52.1 -82.2 -29.3 -8.0 10.3 2.7 65 65 A Q H < S+ 0 0 114 -4,-2.6 -2,-0.2 -5,-0.2 -3,-0.2 0.837 117.6 38.7 -74.9 -33.3 -4.6 12.0 2.5 66 66 A L S < S- 0 0 9 -4,-4.4 -39,-0.1 -5,-0.2 -40,-0.0 -0.813 72.8-141.6-117.1 158.3 -4.0 10.6 -1.0 67 67 A P - 0 0 95 0, 0.0 2,-0.2 0, 0.0 -1,-0.2 0.910 45.0 -90.6 -80.0 -91.6 -6.4 10.2 -4.0 68 68 A V - 0 0 55 2,-0.1 2,-0.9 -42,-0.1 -39,-0.2 -0.794 30.4 -91.0 172.2 144.3 -5.7 7.0 -6.0 69 69 A T + 0 0 55 -41,-1.4 2,-0.5 -2,-0.2 -42,-0.0 -0.547 51.5 167.7 -70.8 103.6 -3.7 5.7 -8.9 70 70 A A 0 0 79 -2,-0.9 -2,-0.1 1,-0.1 -1,-0.0 -0.910 360.0 360.0-125.0 105.0 -6.1 6.2 -11.8 71 71 A R 0 0 297 -2,-0.5 -1,-0.1 0, 0.0 -2,-0.0 0.257 360.0 360.0-173.5 360.0 -4.6 5.8 -15.3