==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=3-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER CHEMOKINE 07-DEC-00 1HFN . COMPND 2 MOLECULE: VIRAL MACROPHAGE INFLAMMATORY PROTEIN-II; . SOURCE 2 SYNTHETIC: YES; . AUTHOR M.P.CRUMP,E.ELISSEEVA,J.-H.GONG,I.CLARK-LEWIS,B.D.SYKES . 71 1 2 2 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 5932.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 26 36.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 10 14.1 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 1 1.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 5 7.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 2 2.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 6 8.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A L 0 0 215 0, 0.0 2,-0.8 0, 0.0 3,-0.2 0.000 360.0 360.0 360.0 108.6 13.4 -22.5 -16.1 2 2 A G + 0 0 88 1,-0.1 0, 0.0 2,-0.1 0, 0.0 -0.736 360.0 127.7-110.8 83.1 12.5 -21.6 -12.5 3 3 A A S S- 0 0 78 -2,-0.8 -1,-0.1 0, 0.0 2,-0.1 0.877 80.3 -50.1 -96.7 -70.2 11.9 -17.8 -12.5 4 4 A S + 0 0 116 -3,-0.2 2,-0.1 3,-0.0 -2,-0.1 -0.431 60.4 177.6-176.5 92.7 8.5 -17.2 -10.9 5 5 A W + 0 0 217 -2,-0.1 -3,-0.0 0, 0.0 0, 0.0 -0.407 49.8 48.9 -95.2 174.6 5.3 -19.0 -11.9 6 6 A H + 0 0 155 1,-0.1 0, 0.0 -2,-0.1 0, 0.0 0.848 55.4 146.7 61.0 110.2 1.8 -18.7 -10.5 7 7 A R - 0 0 194 0, 0.0 2,-1.1 0, 0.0 -1,-0.1 -0.340 26.5-166.1-174.7 82.7 0.6 -15.1 -10.2 8 8 A P S S- 0 0 91 0, 0.0 2,-3.2 0, 0.0 26,-0.1 -0.649 73.2 -55.5 -81.9 98.7 -3.1 -14.2 -10.6 9 9 A D S S- 0 0 86 -2,-1.1 26,-0.0 1,-0.2 0, 0.0 -0.351 98.7 -72.3 69.5 -67.9 -3.2 -10.4 -11.0 10 10 A K - 0 0 133 -2,-3.2 -1,-0.2 22,-0.0 21,-0.0 -0.192 53.7-170.3-178.6 -75.6 -1.4 -9.9 -7.7 11 11 A a - 0 0 36 1,-0.2 2,-0.7 -4,-0.1 3,-0.2 0.876 12.0-151.9 58.7 107.3 -3.4 -10.7 -4.5 12 12 A b + 0 0 32 1,-0.2 27,-0.3 40,-0.0 -1,-0.2 -0.766 22.5 170.2-113.2 86.1 -1.5 -9.5 -1.4 13 13 A L + 0 0 119 -2,-0.7 2,-0.2 25,-0.1 -1,-0.2 0.838 66.3 69.4 -61.8 -32.8 -2.5 -11.7 1.5 14 14 A G - 0 0 34 -3,-0.2 2,-0.3 38,-0.0 23,-0.0 -0.556 68.6-168.6 -87.9 153.1 0.3 -10.2 3.6 15 15 A Y - 0 0 51 -2,-0.2 37,-0.2 24,-0.0 2,-0.1 -0.846 27.3 -87.0-134.6 170.9 0.2 -6.6 4.8 16 16 A Q - 0 0 21 35,-2.8 37,-0.2 -2,-0.3 34,-0.0 -0.362 20.6-159.0 -77.0 159.9 2.6 -4.1 6.4 17 17 A K + 0 0 194 -2,-0.1 -1,-0.1 35,-0.1 35,-0.1 -0.057 69.5 66.3-128.8 30.9 3.1 -3.9 10.1 18 18 A R S S- 0 0 151 2,-0.0 2,-0.4 0, 0.0 -2,-0.1 -0.978 77.1-121.0-153.2 137.2 4.5 -0.3 10.4 19 19 A P - 0 0 97 0, 0.0 -2,-0.0 0, 0.0 40,-0.0 -0.669 26.9-160.7 -84.8 129.1 3.0 3.2 9.7 20 20 A L - 0 0 45 -2,-0.4 2,-0.2 1,-0.0 5,-0.0 -0.765 19.9-111.0-106.4 153.4 4.8 5.3 7.1 21 21 A P > - 0 0 79 0, 0.0 3,-1.1 0, 0.0 4,-0.3 -0.578 11.0-136.7 -84.2 144.5 4.5 9.1 6.6 22 22 A Q T 3 S+ 0 0 64 1,-0.2 3,-0.4 -2,-0.2 -2,-0.0 0.580 87.5 96.5 -72.8 -8.4 2.7 10.7 3.6 23 23 A V T 3 S+ 0 0 118 1,-0.3 -1,-0.2 3,-0.0 -3,-0.0 0.738 103.1 20.0 -53.4 -23.1 5.7 13.1 3.4 24 24 A L S < S+ 0 0 57 -3,-1.1 21,-2.4 21,-0.0 22,-0.4 0.375 106.3 101.2-127.3 0.2 7.1 10.8 0.8 25 25 A L - 0 0 7 -3,-0.4 19,-0.2 -4,-0.3 3,-0.1 -0.268 43.1-174.1 -80.7 172.5 4.1 8.8 -0.4 26 26 A S - 0 0 43 17,-0.5 2,-0.2 1,-0.5 18,-0.2 0.569 51.5 -42.3-129.9 -64.1 2.1 9.5 -3.6 27 27 A S E -A 43 0A 27 16,-1.2 16,-2.2 39,-0.1 -1,-0.5 -0.871 45.2-119.2-157.2-171.4 -1.0 7.4 -4.0 28 28 A W E -A 42 0A 34 -2,-0.2 41,-1.4 14,-0.2 14,-0.2 -0.996 13.0-153.7-147.1 139.2 -2.6 3.9 -3.5 29 29 A Y E -A 41 0A 42 12,-2.3 12,-1.8 -2,-0.3 41,-0.1 -0.895 21.9-120.3-115.0 143.7 -4.2 1.4 -5.9 30 30 A P E -A 40 0A 69 0, 0.0 10,-0.2 0, 0.0 9,-0.1 -0.420 25.1-118.9 -80.8 156.8 -6.8 -1.2 -5.0 31 31 A T - 0 0 31 8,-1.5 2,-0.1 1,-0.2 -22,-0.1 -0.108 36.0 -86.9 -81.4-175.9 -6.4 -5.0 -5.5 32 32 A S - 0 0 30 1,-0.1 3,-0.4 2,-0.0 -1,-0.2 -0.391 26.9-119.2 -89.7 170.6 -8.5 -7.3 -7.7 33 33 A Q S S+ 0 0 186 1,-0.2 -1,-0.1 -2,-0.1 -2,-0.0 -0.014 99.6 78.2 -98.8 29.2 -11.7 -9.1 -6.7 34 34 A L S S+ 0 0 121 -26,-0.1 2,-0.3 3,-0.0 -1,-0.2 -0.096 74.1 95.6-126.2 33.5 -10.1 -12.5 -7.3 35 35 A a S S- 0 0 25 -3,-0.4 -24,-0.1 1,-0.1 -26,-0.0 -0.857 75.7-123.3-123.4 159.3 -8.1 -12.9 -4.1 36 36 A S S S- 0 0 123 -2,-0.3 -1,-0.1 1,-0.2 -25,-0.0 0.977 105.8 -2.0 -63.0 -56.5 -8.8 -14.5 -0.7 37 37 A K S S- 0 0 115 -3,-0.1 2,-0.3 -23,-0.0 -1,-0.2 -0.614 82.2-180.0-137.7 74.6 -8.2 -11.3 1.3 38 38 A P + 0 0 42 0, 0.0 -25,-0.1 0, 0.0 -3,-0.0 -0.621 8.6 160.9 -82.4 133.5 -7.2 -8.4 -1.0 39 39 A G - 0 0 2 -2,-0.3 -8,-1.5 -27,-0.3 2,-0.3 0.380 44.4 -65.9-113.2-112.8 -6.5 -5.0 0.5 40 40 A V E -AB 30 52A 1 12,-1.0 12,-3.8 -10,-0.2 2,-0.5 -0.982 29.6-142.9-153.7 139.7 -4.6 -2.2 -1.1 41 41 A I E -AB 29 51A 9 -12,-1.8 -12,-2.3 -2,-0.3 10,-0.3 -0.890 18.8-146.3-106.9 130.0 -1.0 -1.6 -2.2 42 42 A F E -AB 28 50A 2 8,-3.0 8,-1.1 -2,-0.5 2,-0.3 -0.411 2.4-151.3 -88.0 167.2 0.6 1.8 -1.8 43 43 A L E -AB 27 49A 42 -16,-2.2 -16,-1.2 6,-0.2 -17,-0.5 -0.806 9.2-154.1-144.8 99.1 3.1 3.4 -4.1 44 44 A T - 0 0 19 4,-1.8 -19,-0.2 -2,-0.3 -22,-0.0 -0.055 32.7-103.8 -63.3 172.5 5.6 5.9 -2.7 45 45 A K S S- 0 0 148 -21,-2.4 -20,-0.1 1,-0.1 -1,-0.1 0.980 106.1 -16.6 -63.0 -57.7 7.2 8.6 -4.9 46 46 A R S S+ 0 0 232 -22,-0.4 -1,-0.1 2,-0.1 -21,-0.1 0.321 125.5 80.6-129.8 1.5 10.5 6.9 -5.2 47 47 A G S S- 0 0 48 -23,-0.3 2,-0.3 1,-0.2 -22,-0.0 0.783 86.6 -86.2 -76.0-110.5 10.4 4.4 -2.3 48 48 A R - 0 0 199 2,-0.0 -4,-1.8 0, 0.0 -1,-0.2 -0.864 39.5 -75.8-152.2-174.8 8.5 1.1 -2.9 49 49 A Q E -B 43 0A 115 -2,-0.3 2,-0.3 -6,-0.2 -6,-0.2 -0.464 36.6-163.1 -89.7 164.2 5.1 -0.5 -2.7 50 50 A V E -B 42 0A 16 -8,-1.1 -8,-3.0 -2,-0.1 2,-0.7 -0.906 17.7-136.3-154.2 123.5 3.3 -1.6 0.5 51 51 A b E +B 41 0A 25 -2,-0.3 -35,-2.8 -10,-0.3 2,-0.4 -0.672 39.3 164.5 -79.9 114.0 0.4 -4.0 1.0 52 52 A A E -B 40 0A 0 -12,-3.8 -12,-1.0 -2,-0.7 2,-0.5 -0.997 33.1-135.4-137.4 139.2 -1.9 -2.3 3.5 53 53 A D > - 0 0 39 -2,-0.4 3,-2.6 -37,-0.2 6,-0.2 -0.772 16.3-135.9 -93.6 131.2 -5.5 -2.9 4.6 54 54 A K T 3 S+ 0 0 102 -2,-0.5 -1,-0.1 1,-0.3 6,-0.1 0.759 100.9 77.2 -54.9 -23.8 -7.7 0.2 4.9 55 55 A S T 3 S+ 0 0 113 4,-0.1 -1,-0.3 5,-0.1 5,-0.0 0.800 81.5 87.2 -57.3 -27.7 -8.9 -1.4 8.2 56 56 A K S < S- 0 0 62 -3,-2.6 4,-0.1 1,-0.1 -4,-0.0 0.139 83.6-124.7 -60.2-175.2 -5.7 -0.2 9.7 57 57 A D S > S+ 0 0 138 2,-0.1 4,-1.8 3,-0.1 3,-0.3 0.858 103.6 40.2-100.6 -58.6 -5.3 3.3 11.2 58 58 A W H > S+ 0 0 39 1,-0.2 4,-1.6 2,-0.2 5,-0.1 0.819 116.4 54.0 -62.8 -29.4 -2.4 4.9 9.4 59 59 A V H > S+ 0 0 0 -6,-0.2 4,-2.2 2,-0.2 -1,-0.2 0.837 104.1 55.6 -73.1 -32.0 -3.6 3.4 6.2 60 60 A K H > S+ 0 0 139 -3,-0.3 4,-1.3 2,-0.2 -2,-0.2 0.926 106.9 48.9 -65.4 -45.1 -7.0 4.9 6.7 61 61 A K H X S+ 0 0 125 -4,-1.8 4,-2.4 1,-0.2 3,-0.4 0.913 111.3 49.9 -61.2 -43.1 -5.6 8.4 7.0 62 62 A L H X S+ 0 0 2 -4,-1.6 4,-4.0 1,-0.2 -1,-0.2 0.916 103.4 60.2 -61.5 -43.3 -3.6 8.0 3.9 63 63 A M H < S+ 0 0 38 -4,-2.2 -1,-0.2 1,-0.2 -2,-0.2 0.850 114.4 36.2 -52.9 -36.3 -6.7 6.7 2.0 64 64 A Q H < S+ 0 0 175 -4,-1.3 -1,-0.2 -3,-0.4 -2,-0.2 0.776 117.2 52.4 -87.3 -30.3 -8.3 10.1 2.8 65 65 A Q H < S+ 0 0 105 -4,-2.4 -2,-0.2 -5,-0.2 -3,-0.2 0.855 112.6 47.9 -73.7 -35.8 -5.0 12.1 2.4 66 66 A L S < S- 0 0 15 -4,-4.0 -39,-0.1 -5,-0.2 -40,-0.0 -0.756 72.5-145.7-105.9 153.7 -4.3 10.6 -1.1 67 67 A P - 0 0 97 0, 0.0 2,-0.3 0, 0.0 -1,-0.2 0.965 47.5 -89.4 -78.8 -78.6 -6.8 10.2 -4.0 68 68 A V - 0 0 67 -42,-0.1 2,-0.3 -39,-0.0 -39,-0.2 -0.904 21.5-134.4 172.1 163.9 -6.0 7.0 -5.9 69 69 A T + 0 0 50 -41,-1.4 2,-0.3 -2,-0.3 -42,-0.1 -0.876 42.2 129.0-144.0 107.7 -3.8 5.6 -8.7 70 70 A A 0 0 81 -2,-0.3 -42,-0.0 -41,-0.1 -41,-0.0 -0.860 360.0 360.0-162.2 122.3 -5.3 3.2 -11.4 71 71 A R 0 0 321 -2,-0.3 -2,-0.0 0, 0.0 0, 0.0 -0.966 360.0 360.0-151.7 360.0 -5.1 3.3 -15.2