==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=14-APR-2010 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER TRANSCRIPTION/RNA 27-JUN-06 2HGH . COMPND 2 MOLECULE: TRANSCRIPTION FACTOR IIIA; . SOURCE 2 ORGANISM_SCIENTIFIC: XENOPUS LAEVIS; . AUTHOR B.M.LEE . 87 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 7242.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 48 55.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 9 10.3 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 1 1.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 8 9.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 28 32.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 1 1.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 1 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 104 A M 0 0 155 0, 0.0 2,-0.5 0, 0.0 13,-0.2 0.000 360.0 360.0 360.0 129.4 11.4 -13.5 2.9 2 105 A Y E -A 13 0A 118 11,-2.6 11,-3.1 13,-0.0 2,-0.4 -0.895 360.0-157.9-109.1 124.5 10.7 -13.1 -0.9 3 106 A V E -A 12 0A 47 -2,-0.5 2,-0.4 9,-0.2 9,-0.2 -0.865 16.7-126.9-112.0 139.1 13.6 -13.2 -3.3 4 107 A C - 0 0 0 7,-3.2 6,-0.9 -2,-0.4 7,-0.1 -0.651 17.1-168.4 -77.8 127.0 14.1 -11.8 -6.9 5 108 A H + 0 0 159 -2,-0.4 3,-0.1 4,-0.1 -1,-0.1 0.080 36.3 138.4-109.1 23.8 15.3 -14.6 -9.2 6 109 A F S > S- 0 0 96 1,-0.2 3,-2.4 5,-0.1 4,-0.4 -0.260 74.9 -67.5 -61.7 153.4 16.2 -12.3 -12.1 7 110 A E T 3 S- 0 0 180 1,-0.3 -1,-0.2 2,-0.1 -2,-0.0 -0.282 116.1 -15.3 -55.9 114.7 19.5 -13.2 -13.8 8 111 A N T 3 S+ 0 0 168 -2,-0.2 -1,-0.3 -3,-0.1 -2,-0.1 0.625 112.8 107.8 69.7 15.0 22.4 -12.5 -11.3 9 112 A C < + 0 0 44 -3,-2.4 -4,-0.1 2,-0.1 -2,-0.1 0.931 34.8 166.3 -84.6 -79.6 20.0 -10.4 -9.2 10 113 A G + 0 0 55 -6,-0.9 -5,-0.1 -4,-0.4 2,-0.1 0.641 19.6 160.8 74.5 15.2 19.3 -12.4 -5.9 11 114 A K - 0 0 119 -7,-0.1 -7,-3.2 -8,-0.1 2,-0.4 -0.428 26.3-147.6 -71.1 143.4 17.8 -9.3 -4.1 12 115 A A E -A 3 0A 51 -9,-0.2 2,-0.3 -2,-0.1 -9,-0.2 -0.935 12.7-168.7-123.2 137.5 15.6 -10.2 -1.0 13 116 A F E -A 2 0A 27 -11,-3.1 -11,-2.6 -2,-0.4 6,-0.0 -0.891 29.8-128.8-126.2 154.7 12.5 -8.3 0.3 14 117 A K S S+ 0 0 139 -2,-0.3 2,-0.3 -13,-0.2 -1,-0.1 0.851 95.7 26.4 -66.9 -38.0 10.3 -8.5 3.5 15 118 A K S >> S- 0 0 107 -13,-0.1 4,-1.4 -14,-0.1 3,-0.8 -0.947 76.4-123.2-135.6 149.0 7.0 -8.8 1.5 16 119 A H H 3> S+ 0 0 100 -2,-0.3 4,-2.9 1,-0.2 5,-0.2 0.787 109.4 62.4 -66.3 -29.0 6.1 -10.1 -2.0 17 120 A N H 3> S+ 0 0 63 2,-0.2 4,-1.9 1,-0.2 -1,-0.2 0.871 105.3 48.5 -64.9 -30.4 4.5 -6.8 -3.1 18 121 A Q H <> S+ 0 0 84 -3,-0.8 4,-2.1 2,-0.2 -2,-0.2 0.876 109.9 51.7 -73.2 -37.5 8.0 -5.2 -2.6 19 122 A L H X S+ 0 0 20 -4,-1.4 4,-2.5 2,-0.2 -2,-0.2 0.951 111.0 47.0 -61.9 -47.1 9.5 -8.1 -4.7 20 123 A K H X S+ 0 0 132 -4,-2.9 4,-2.0 1,-0.2 -2,-0.2 0.901 110.2 54.5 -60.3 -39.3 6.9 -7.5 -7.5 21 124 A V H X S+ 0 0 30 -4,-1.9 4,-0.6 -5,-0.2 -1,-0.2 0.892 110.1 46.7 -59.2 -41.2 7.8 -3.7 -7.2 22 125 A H H >X S+ 0 0 38 -4,-2.1 3,-1.1 1,-0.2 4,-0.9 0.924 110.4 50.3 -69.5 -45.0 11.5 -4.6 -7.7 23 126 A Q H 3X S+ 0 0 67 -4,-2.5 4,-2.4 1,-0.3 5,-0.3 0.844 97.4 68.7 -66.3 -31.9 10.9 -6.9 -10.7 24 127 A F H 3X>S+ 0 0 45 -4,-2.0 4,-1.2 1,-0.2 5,-1.0 0.836 96.4 56.9 -55.0 -28.9 8.8 -4.2 -12.4 25 128 A S H <<5S+ 0 0 70 -3,-1.1 -1,-0.2 -4,-0.6 -2,-0.2 0.942 107.4 44.9 -67.7 -46.6 12.1 -2.3 -12.7 26 129 A H H <5S+ 0 0 71 -4,-0.9 -2,-0.2 1,-0.2 -1,-0.2 0.865 119.8 42.1 -64.8 -36.3 13.8 -5.2 -14.7 27 130 A T H <5S- 0 0 73 -4,-2.4 -1,-0.2 2,-0.2 -2,-0.2 0.656 100.1-140.7 -82.3 -18.8 10.7 -5.6 -16.9 28 131 A Q T <5 + 0 0 166 -4,-1.2 2,-0.3 -5,-0.3 -3,-0.2 0.735 65.7 110.4 56.4 30.4 10.3 -1.8 -17.2 29 132 A Q S S- 0 0 94 1,-0.1 3,-1.9 2,-0.1 2,-0.4 -0.299 71.9 -95.4 -64.9 146.5 -11.8 1.6 -13.3 37 140 A E T 3 S+ 0 0 182 1,-0.3 -1,-0.1 3,-0.0 3,-0.1 -0.465 111.6 11.9 -65.5 118.4 -14.0 1.8 -16.4 38 141 A G T 3 S+ 0 0 93 1,-0.4 2,-0.3 -2,-0.4 -1,-0.3 0.405 107.5 107.8 94.3 0.1 -12.5 4.3 -18.9 39 142 A C < + 0 0 28 -3,-1.9 -1,-0.4 1,-0.1 0, 0.0 -0.750 34.7 170.5-109.8 155.8 -9.1 4.5 -16.9 40 143 A D + 0 0 138 -2,-0.3 -1,-0.1 -3,-0.1 2,-0.1 0.175 30.7 138.4-148.0 13.5 -5.7 3.1 -17.9 41 144 A K - 0 0 123 -8,-0.1 -7,-3.0 8,-0.0 2,-0.3 -0.368 32.5-162.1 -66.1 144.8 -3.3 4.6 -15.3 42 145 A R E -B 33 0B 89 -9,-0.2 2,-0.3 -2,-0.1 -9,-0.2 -0.942 2.7-159.3-131.8 151.8 -0.5 2.3 -13.8 43 146 A F E -B 32 0B 32 -11,-2.7 -11,-1.7 -2,-0.3 6,-0.0 -0.870 25.7-132.4-134.0 160.2 1.6 2.7 -10.7 44 147 A S S S+ 0 0 45 -2,-0.3 -20,-0.1 -14,-0.2 -1,-0.1 0.787 91.7 34.4 -83.4 -29.2 4.8 1.5 -9.1 45 148 A L S > S- 0 0 69 -13,-0.1 4,-1.9 1,-0.1 5,-0.2 -0.904 74.3-125.5-129.7 155.0 3.3 0.7 -5.7 46 149 A P H > S+ 0 0 48 0, 0.0 4,-2.9 0, 0.0 5,-0.1 0.880 113.8 53.5 -66.3 -36.8 -0.0 -0.6 -4.3 47 150 A S H > S+ 0 0 67 2,-0.2 4,-2.2 1,-0.2 5,-0.1 0.835 107.1 52.7 -65.9 -31.3 -0.4 2.4 -2.0 48 151 A R H > S+ 0 0 130 2,-0.2 4,-2.3 1,-0.2 -1,-0.2 0.910 111.9 44.3 -72.5 -39.2 0.1 4.7 -5.0 49 152 A L H X S+ 0 0 30 -4,-1.9 4,-2.4 2,-0.2 -2,-0.2 0.925 112.1 53.2 -66.1 -44.8 -2.7 2.9 -6.9 50 153 A K H X S+ 0 0 135 -4,-2.9 4,-0.9 2,-0.2 -2,-0.2 0.908 110.8 47.3 -55.6 -42.3 -4.8 3.0 -3.7 51 154 A R H >< S+ 0 0 110 -4,-2.2 3,-0.8 1,-0.2 4,-0.5 0.924 109.8 52.7 -65.9 -42.1 -4.2 6.8 -3.6 52 155 A H H >X S+ 0 0 21 -4,-2.3 3,-1.8 1,-0.2 4,-0.7 0.870 99.8 63.0 -60.3 -37.0 -5.1 7.1 -7.3 53 156 A E H >X S+ 0 0 118 -4,-2.4 4,-1.7 1,-0.3 3,-0.8 0.839 90.6 67.2 -58.7 -31.5 -8.4 5.2 -6.6 54 157 A K H S- 0 0 85 1,-0.1 3,-1.5 0, 0.0 -1,-0.2 -0.996 72.1-131.5-148.6 144.1 -18.8 23.3 6.7 65 168 A D T 3 S+ 0 0 164 -2,-0.3 -1,-0.1 1,-0.3 -2,-0.0 0.786 109.4 53.3 -64.8 -28.0 -21.8 21.1 7.7 66 169 A S T 3 S+ 0 0 109 -3,-0.0 -1,-0.3 -4,-0.0 2,-0.2 0.216 89.3 102.5 -97.0 17.2 -24.0 22.7 5.1 67 170 A C < + 0 0 36 -3,-1.5 0, 0.0 1,-0.1 0, 0.0 -0.594 38.0 171.4 -94.0 159.0 -21.5 22.1 2.2 68 171 A S + 0 0 113 -2,-0.2 -1,-0.1 -8,-0.0 2,-0.1 0.284 29.2 133.3-149.9 3.8 -22.0 19.2 -0.4 69 172 A F - 0 0 65 -9,-0.1 -8,-2.9 8,-0.0 2,-0.4 -0.382 33.5-166.1 -64.7 139.7 -19.3 19.8 -3.1 70 173 A V E -C 60 0C 80 -10,-0.2 2,-0.3 -2,-0.1 -12,-0.0 -0.981 12.4-142.7-128.3 120.3 -17.3 16.7 -4.2 71 174 A G E -C 59 0C 0 -12,-2.6 -12,-2.2 -2,-0.4 6,-0.1 -0.635 9.6-143.0 -84.8 134.7 -14.1 17.4 -6.2 72 175 A K S S+ 0 0 170 -2,-0.3 2,-0.3 -14,-0.2 -14,-0.2 0.664 90.2 20.4 -67.0 -14.8 -13.2 15.0 -9.1 73 176 A T S > S- 0 0 50 -14,-0.1 4,-1.5 1,-0.1 3,-0.2 -0.971 85.8-106.3-150.8 161.3 -9.5 15.5 -8.0 74 177 A W H > S+ 0 0 131 -2,-0.3 4,-2.4 1,-0.2 3,-0.2 0.891 118.3 55.2 -58.1 -40.0 -7.5 16.6 -4.9 75 178 A T H > S+ 0 0 78 1,-0.2 4,-3.1 2,-0.2 5,-0.3 0.908 103.5 54.5 -57.0 -47.0 -6.7 20.0 -6.6 76 179 A L H > S+ 0 0 74 -3,-0.2 4,-2.0 1,-0.2 -1,-0.2 0.857 110.3 46.6 -62.3 -33.8 -10.4 20.8 -7.3 77 180 A Y H X S+ 0 0 31 -4,-1.5 4,-2.6 2,-0.2 -1,-0.2 0.952 113.4 47.5 -70.1 -48.2 -11.2 20.3 -3.5 78 181 A L H X S+ 0 0 78 -4,-2.4 4,-1.7 1,-0.2 -2,-0.2 0.909 115.2 46.3 -60.1 -42.0 -8.2 22.5 -2.4 79 182 A K H X S+ 0 0 147 -4,-3.1 4,-1.3 2,-0.2 -1,-0.2 0.895 111.0 53.0 -66.6 -39.4 -9.2 25.2 -5.0 80 183 A H H X S+ 0 0 27 -4,-2.0 4,-2.9 -5,-0.3 5,-0.4 0.909 107.7 52.0 -61.9 -41.4 -12.9 24.9 -3.9 81 184 A V H X S+ 0 0 28 -4,-2.6 4,-2.3 1,-0.2 -1,-0.2 0.907 106.2 52.6 -61.6 -45.1 -11.8 25.5 -0.2 82 185 A A H < S+ 0 0 59 -4,-1.7 -1,-0.2 1,-0.2 -2,-0.2 0.811 119.6 35.0 -63.3 -31.9 -9.8 28.6 -1.0 83 186 A E H < S+ 0 0 152 -4,-1.3 -2,-0.2 -3,-0.3 3,-0.2 0.813 128.1 32.7 -89.2 -39.1 -12.9 30.2 -2.8 84 187 A C H < S+ 0 0 70 -4,-2.9 -3,-0.2 -5,-0.2 -2,-0.2 0.657 130.6 30.4 -99.8 -18.9 -15.8 28.8 -0.7 85 188 A H S < S+ 0 0 40 -4,-2.3 -1,-0.2 -5,-0.4 -2,-0.1 -0.155 70.4 132.8-133.8 39.0 -14.2 28.7 2.8 86 189 A Q 0 0 136 -3,-0.2 -1,-0.1 1,-0.1 -2,-0.1 0.822 360.0 360.0 -58.3 -32.8 -11.6 31.6 2.6 87 190 A D 0 0 189 -3,-0.1 -1,-0.1 0, 0.0 0, 0.0 -0.970 360.0 360.0-149.3 360.0 -12.9 32.7 6.1