==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=31-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER RNA BINDING PROTEIN 27-JUN-06 2HGL . COMPND 2 MOLECULE: HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN F; . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR C.DOMINGUEZ,F.H.-T ALLAIN . 102 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 6065.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 60 58.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 21 20.6 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 1 1.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 2 2.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 1 1.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 8 7.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 12 11.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 15 14.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 1 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 1 2 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A M 0 0 215 0, 0.0 3,-0.1 0, 0.0 37,-0.1 0.000 360.0 360.0 360.0 77.4 -5.5 -11.6 12.5 2 2 A M + 0 0 154 1,-0.6 2,-0.3 0, 0.0 36,-0.1 0.295 360.0 29.7-155.7 -32.7 -8.5 -9.9 14.2 3 3 A L S S+ 0 0 102 2,-0.1 -1,-0.6 0, 0.0 38,-0.2 -0.938 92.9 5.8-134.6 154.0 -10.8 -9.5 11.2 4 4 A G - 0 0 46 -2,-0.3 38,-0.0 2,-0.1 37,-0.0 -0.991 37.9-139.0 160.5-162.1 -11.2 -11.6 8.0 5 5 A P S S- 0 0 123 0, 0.0 2,-0.2 0, 0.0 -2,-0.1 -0.930 97.9 -68.8 -59.2 -29.0 -10.9 -13.8 6.0 6 6 A E S S+ 0 0 103 1,-0.1 -2,-0.1 36,-0.1 36,-0.1 -0.924 75.8 120.8-171.3 169.7 -10.9 -10.7 3.7 7 7 A G + 0 0 40 -2,-0.2 2,-1.5 34,-0.2 35,-0.1 0.763 13.6 172.9 123.7 49.3 -13.4 -8.0 2.5 8 8 A G > - 0 0 2 1,-0.1 2,-2.9 34,-0.1 3,-2.6 -0.135 47.7-127.6 -69.4 37.5 -12.5 -4.3 3.3 9 9 A E T 3 S- 0 0 163 -2,-1.5 -1,-0.1 1,-0.3 81,-0.1 -0.137 75.3 -27.6 41.7 -42.3 -15.6 -3.3 1.1 10 10 A G T 3 S+ 0 0 5 -2,-2.9 2,-0.3 51,-0.2 -1,-0.3 0.317 100.6 114.2-171.7 4.6 -13.7 -0.9 -1.3 11 11 A F < + 0 0 38 -3,-2.6 50,-2.9 50,-0.3 52,-0.2 0.028 42.6 143.8 -81.9 27.4 -10.8 0.6 0.7 12 12 A V E -A 60 0A 1 -2,-0.3 76,-2.6 48,-0.3 2,-0.4 -0.455 30.9-166.8 -62.7 140.8 -8.1 -1.0 -1.6 13 13 A V E -AB 59 87A 1 46,-1.8 46,-2.8 74,-0.2 2,-0.3 -1.000 14.5-139.3-120.5 131.9 -5.0 0.8 -2.4 14 14 A K E -AB 58 86A 33 72,-2.0 72,-2.0 -2,-0.4 2,-0.4 -0.627 15.7-152.4 -75.1 147.9 -2.7 -0.4 -5.1 15 15 A L E +AB 57 85A 5 42,-3.0 42,-2.5 -2,-0.3 2,-0.4 -0.995 17.0 176.6-130.4 122.6 1.0 -0.2 -4.3 16 16 A R E +AB 56 84A 101 68,-2.5 68,-3.0 -2,-0.4 40,-0.2 -0.998 55.8 34.1-136.2 135.4 3.6 0.2 -7.1 17 17 A G S S+ 0 0 13 38,-2.9 65,-0.6 -2,-0.4 66,-0.2 -0.073 78.6 145.5 121.8 -30.3 7.4 0.7 -7.1 18 18 A L - 0 0 8 37,-0.3 -1,-0.2 63,-0.2 64,-0.2 0.332 55.9 -77.9 -41.4 157.2 8.2 -1.5 -4.1 19 19 A P > - 0 0 21 0, 0.0 3,-1.3 0, 0.0 -1,-0.1 -0.256 38.2-118.4 -57.7 146.8 11.2 -3.8 -3.3 20 20 A W T 3 S+ 0 0 169 1,-0.2 33,-0.2 35,-0.1 35,-0.1 0.418 112.4 37.2 -67.4 -0.9 11.3 -7.3 -5.0 21 21 A S T 3 S+ 0 0 101 2,-0.0 -1,-0.2 34,-0.0 34,-0.1 0.280 87.7 126.7-135.0 4.1 11.3 -9.0 -1.6 22 22 A C < - 0 0 28 -3,-1.3 2,-0.3 1,-0.0 23,-0.0 -0.141 31.9-176.2 -71.7 166.9 8.9 -6.9 0.6 23 23 A S >> - 0 0 46 22,-0.0 3,-2.1 21,-0.0 4,-1.0 -0.897 46.9 -74.1-152.6 169.1 5.8 -8.0 2.6 24 24 A V H 3> S+ 0 0 28 1,-0.3 4,-2.6 -2,-0.3 5,-0.3 0.776 121.5 67.4 -49.3 -26.6 3.0 -6.8 4.7 25 25 A E H 34 S+ 0 0 133 1,-0.3 4,-0.4 2,-0.2 -1,-0.3 0.860 107.0 43.5 -64.6 -28.0 5.3 -6.1 7.7 26 26 A D H <> S+ 0 0 31 -3,-2.1 4,-2.7 2,-0.2 -1,-0.3 0.715 110.5 54.3 -81.0 -26.6 6.7 -3.4 5.3 27 27 A V H X S+ 0 0 12 -4,-1.0 4,-1.7 2,-0.2 -2,-0.2 0.962 112.8 43.8 -72.0 -47.9 3.2 -2.2 4.2 28 28 A Q H < S+ 0 0 75 -4,-2.6 6,-0.2 2,-0.2 -2,-0.2 0.638 116.4 47.9 -65.8 -25.1 2.3 -1.7 7.8 29 29 A N H >4 S+ 0 0 85 -4,-0.4 3,-1.4 -5,-0.3 -2,-0.2 0.882 111.2 48.1 -84.3 -45.2 5.7 -0.0 8.5 30 30 A F H 3< S+ 0 0 15 -4,-2.7 -2,-0.2 1,-0.3 3,-0.2 0.829 123.8 37.9 -56.7 -30.5 5.5 2.3 5.5 31 31 A L T >< + 0 0 4 -4,-1.7 3,-2.3 -5,-0.2 -1,-0.3 -0.358 65.5 140.1-124.7 48.5 2.0 3.0 6.8 32 32 A S T < S+ 0 0 95 -3,-1.4 -1,-0.1 1,-0.3 -2,-0.1 0.629 73.9 69.0 -56.5 -15.4 2.7 3.0 10.6 33 33 A D T 3 S+ 0 0 65 -3,-0.2 -1,-0.3 -4,-0.1 2,-0.2 0.619 99.5 68.3 -58.3 -25.3 0.1 5.9 10.2 34 34 A C < - 0 0 25 -3,-2.3 -3,-0.1 -6,-0.2 32,-0.0 -0.618 61.2-149.2-134.9 161.3 -2.5 3.4 9.3 35 35 A T - 0 0 85 -2,-0.2 3,-0.3 28,-0.1 -1,-0.1 0.896 25.4-155.9 -93.0 -47.7 -4.9 0.5 10.3 36 36 A I - 0 0 2 1,-0.1 25,-0.3 27,-0.1 4,-0.1 0.288 50.4 -77.3 52.2 159.4 -5.7 -1.8 7.3 37 37 A H S S- 0 0 40 23,-1.9 -1,-0.1 1,-0.2 24,-0.1 0.346 122.4 -11.9 -68.7 13.5 -9.0 -3.7 7.6 38 38 A D S S- 0 0 14 -3,-0.3 -1,-0.2 22,-0.1 -2,-0.1 0.077 102.9 -95.6-170.7 -49.5 -7.3 -6.2 10.1 39 39 A G S S+ 0 0 10 -37,-0.1 -11,-0.1 -38,-0.0 -2,-0.1 -0.399 110.6 4.2 141.4 -49.5 -3.6 -5.4 9.9 40 40 A A S > S+ 0 0 46 -4,-0.1 3,-1.4 2,-0.1 2,-0.3 0.491 108.5 86.0-135.6 -17.7 -2.5 -8.1 7.4 41 41 A A T 3 S+ 0 0 31 1,-0.2 -34,-0.2 -38,-0.2 3,-0.0 0.041 95.4 47.9 -80.9 29.6 -5.8 -9.8 6.3 42 42 A G T 3 S+ 0 0 0 -2,-0.3 18,-3.0 -36,-0.1 2,-0.3 0.333 91.7 96.3-137.1 -7.3 -6.3 -7.1 3.7 43 43 A V E < +C 59 0A 16 -3,-1.4 2,-0.3 16,-0.3 16,-0.2 -0.697 42.2 170.7 -94.5 144.0 -2.8 -7.1 2.0 44 44 A H E -C 58 0A 40 14,-2.3 14,-2.7 -2,-0.3 2,-0.3 -0.986 19.7-142.8-144.5 147.9 -1.8 -8.9 -1.2 45 45 A F E -C 57 0A 28 -2,-0.3 2,-0.3 12,-0.2 12,-0.3 -0.720 20.5-118.7-108.6 158.3 1.3 -8.9 -3.3 46 46 A I E - 0 0 15 10,-2.5 8,-2.1 8,-0.3 2,-0.3 -0.729 22.0-155.5-106.0 154.2 1.5 -9.2 -7.2 47 47 A Y E -C 53 0A 122 6,-0.3 6,-0.3 -2,-0.3 7,-0.1 -0.953 29.6-119.3-140.2 134.0 3.3 -11.9 -9.0 48 48 A T - 0 0 69 4,-2.1 5,-0.1 -2,-0.3 -1,-0.0 0.617 60.6-111.8 -67.9 -10.2 4.8 -11.9 -12.5 49 49 A R S S+ 0 0 85 3,-0.5 -1,-0.1 51,-0.0 4,-0.1 0.134 100.4 52.2 118.3 -0.3 2.3 -14.8 -13.0 50 50 A E S S- 0 0 127 2,-0.2 50,-0.0 51,-0.0 -3,-0.0 0.561 127.3 -29.6-133.7 -25.5 4.5 -17.9 -13.4 51 51 A G S S+ 0 0 54 1,-0.3 2,-0.3 2,-0.0 -4,-0.0 0.405 106.0 62.1 169.8 37.9 6.9 -18.1 -10.4 52 52 A R - 0 0 134 0, 0.0 -4,-2.1 0, 0.0 -3,-0.5 -0.965 64.7-114.2-163.9 152.1 8.0 -14.7 -8.7 53 53 A Q E - C 0 47A 85 -2,-0.3 -6,-0.3 -6,-0.3 2,-0.3 -0.319 30.7-148.6 -76.5 172.3 6.8 -11.6 -6.9 54 54 A S E - 0 0 27 -8,-2.1 2,-1.1 2,-0.4 -8,-0.3 -0.858 34.3 -93.5-134.4 168.9 7.0 -8.1 -8.4 55 55 A G E S+ 0 0 5 -2,-0.3 -38,-2.9 -38,-0.1 -37,-0.3 -0.193 100.2 88.8 -75.3 40.7 7.4 -4.4 -7.2 56 56 A E E +A 16 0A 59 -2,-1.1 -10,-2.5 -10,-0.3 -2,-0.4 -0.981 46.9 152.6-142.8 151.6 3.6 -4.2 -7.1 57 57 A A E -AC 15 45A 0 -42,-2.5 -42,-3.0 -2,-0.3 2,-0.3 -0.939 28.3-134.2-165.2 174.4 0.8 -5.0 -4.5 58 58 A F E -AC 14 44A 6 -14,-2.7 -14,-2.3 -44,-0.3 2,-0.4 -0.984 15.4-165.5-151.2 138.8 -2.8 -4.2 -3.4 59 59 A V E -AC 13 43A 3 -46,-2.8 -46,-1.8 -2,-0.3 2,-1.0 -0.941 18.9-142.0-141.2 107.5 -4.1 -3.5 0.2 60 60 A E E -A 12 0A 0 -18,-3.0 -23,-1.9 -2,-0.4 -48,-0.3 -0.583 33.0-150.8 -60.1 95.9 -7.7 -3.4 1.6 61 61 A L - 0 0 1 -50,-2.9 -50,-0.3 -2,-1.0 -51,-0.2 -0.158 20.4-112.0 -67.3 170.2 -7.3 -0.5 4.1 62 62 A G S S- 0 0 30 1,-0.2 2,-0.2 -25,-0.0 -1,-0.1 0.525 93.5 -4.6 -94.2 -2.8 -9.5 -0.3 7.3 63 63 A S S > S- 0 0 37 -52,-0.2 4,-1.7 -55,-0.0 -1,-0.2 -0.923 75.8-103.0-164.5 169.0 -11.5 2.8 6.1 64 64 A E H > S+ 0 0 69 -2,-0.2 4,-2.1 2,-0.2 5,-0.1 0.698 125.3 59.8 -72.1 -15.0 -11.4 5.2 3.1 65 65 A D H > S+ 0 0 103 2,-0.2 4,-2.2 3,-0.2 -1,-0.2 0.831 102.2 52.2 -78.4 -27.6 -9.7 7.7 5.6 66 66 A D H > S+ 0 0 14 2,-0.2 4,-2.0 3,-0.1 -2,-0.2 0.924 107.4 52.5 -60.6 -42.6 -7.0 4.9 5.9 67 67 A V H X S+ 0 0 2 -4,-1.7 4,-2.2 1,-0.2 3,-0.4 0.962 110.2 47.2 -56.5 -50.6 -7.0 5.0 2.0 68 68 A K H X S+ 0 0 90 -4,-2.1 4,-1.5 2,-0.2 -1,-0.2 0.860 107.5 55.8 -54.8 -42.6 -6.4 8.8 2.3 69 69 A M H < S+ 0 0 77 -4,-2.2 -1,-0.2 2,-0.2 4,-0.2 0.859 110.2 46.6 -59.1 -37.4 -3.7 8.2 5.0 70 70 A A H >< S+ 0 0 0 -4,-2.0 3,-1.5 -3,-0.4 -2,-0.2 0.864 105.7 58.8 -72.4 -35.9 -1.9 6.0 2.4 71 71 A L H >< S+ 0 0 60 -4,-2.2 3,-1.9 1,-0.3 -2,-0.2 0.792 89.9 72.3 -63.0 -27.7 -2.4 8.7 -0.4 72 72 A K T 3< S+ 0 0 115 -4,-1.5 -1,-0.3 1,-0.3 -2,-0.2 0.776 105.9 39.1 -52.7 -27.5 -0.4 11.1 1.8 73 73 A K T X S+ 0 0 46 -3,-1.5 3,-2.6 -4,-0.2 2,-0.6 0.120 76.2 139.3-104.9 12.8 2.6 8.9 0.8 74 74 A D T < S+ 0 0 57 -3,-1.9 11,-0.5 1,-0.3 -1,-0.1 0.294 83.2 19.9 -64.5 10.4 1.6 8.3 -2.9 75 75 A R E 3 S+D 84 0A 140 -2,-0.6 -1,-0.3 9,-0.2 9,-0.2 0.070 97.5 118.6-154.7 25.7 5.2 8.7 -4.3 76 76 A E E < -D 83 0A 99 -3,-2.6 7,-2.8 7,-0.8 2,-0.3 0.129 57.0-116.9 -65.5-166.4 7.4 8.1 -1.2 77 77 A S E -D 82 0A 65 5,-0.3 2,-0.3 6,-0.1 5,-0.2 -0.975 21.3-174.3-136.9 151.5 10.0 5.3 -0.8 78 78 A M S S- 0 0 60 3,-1.9 2,-0.2 -2,-0.3 -48,-0.1 -0.840 80.2 -6.8-146.6 104.8 10.5 2.3 1.6 79 79 A G S S- 0 0 50 -2,-0.3 2,-0.8 1,-0.1 -61,-0.0 -0.497 122.2 -46.8 93.0-172.2 13.9 0.8 0.8 80 80 A H S S+ 0 0 191 -2,-0.2 2,-0.3 -3,-0.1 -1,-0.1 -0.112 125.1 88.4 -73.5 32.7 16.0 2.0 -2.2 81 81 A R S S- 0 0 90 -2,-0.8 -3,-1.9 -62,-0.0 -63,-0.2 -0.973 79.8-110.5-147.5 145.8 12.6 1.7 -4.0 82 82 A Y E - D 0 77A 154 -65,-0.6 2,-0.3 -2,-0.3 -5,-0.3 -0.464 13.0-155.0 -90.4 153.6 9.5 3.8 -4.6 83 83 A I E - D 0 76A 3 -7,-2.8 -7,-0.8 -66,-0.2 2,-0.3 -0.718 13.7-179.8-132.0 75.8 6.0 3.4 -3.1 84 84 A E E -BD 16 75A 30 -68,-3.0 -68,-2.5 -2,-0.3 2,-0.5 -0.667 15.8-153.5 -68.3 133.6 3.4 5.0 -5.4 85 85 A V E -B 15 0A 3 -11,-0.5 2,-0.3 -2,-0.3 -70,-0.2 -0.939 10.9-171.3-119.7 110.3 -0.1 4.5 -3.8 86 86 A F E -B 14 0A 80 -72,-2.0 -72,-2.0 -2,-0.5 2,-0.4 -0.769 27.1-118.6 -96.2 146.5 -3.2 4.3 -6.0 87 87 A K E +B 13 0A 86 -2,-0.3 -74,-0.2 -74,-0.2 2,-0.2 -0.703 47.9 165.0 -84.2 131.6 -6.8 4.3 -4.7 88 88 A S - 0 0 3 -76,-2.6 2,-0.3 -2,-0.4 -76,-0.3 -0.676 29.3-129.3-137.6 177.4 -8.4 1.1 -5.8 89 89 A H >> - 0 0 86 -2,-0.2 4,-2.5 -78,-0.1 3,-1.1 -0.982 28.9-113.8-137.3 158.5 -11.5 -1.1 -5.2 90 90 A R H 3> S+ 0 0 60 -2,-0.3 4,-2.8 1,-0.2 5,-0.3 0.854 114.3 66.3 -53.7 -35.4 -12.0 -4.9 -4.5 91 91 A T H 34 S+ 0 0 126 1,-0.2 4,-0.4 2,-0.2 -1,-0.2 0.824 110.5 34.3 -59.6 -36.3 -13.8 -5.1 -7.9 92 92 A E H X> S+ 0 0 90 -3,-1.1 4,-2.3 2,-0.1 3,-1.0 0.911 116.6 55.4 -77.2 -50.8 -10.4 -4.3 -9.7 93 93 A M H 3X S+ 0 0 0 -4,-2.5 4,-2.1 1,-0.3 5,-0.4 0.836 101.4 57.0 -55.5 -38.2 -8.2 -6.1 -7.1 94 94 A D H 3X S+ 0 0 73 -4,-2.8 4,-0.7 -5,-0.2 -1,-0.3 0.832 112.4 44.1 -66.2 -32.0 -10.1 -9.4 -7.5 95 95 A W H <4 S+ 0 0 153 -3,-1.0 -2,-0.2 -4,-0.4 -1,-0.2 0.974 113.0 48.9 -65.9 -60.7 -9.3 -9.2 -11.3 96 96 A V H < S+ 0 0 18 -4,-2.3 3,-0.2 1,-0.2 -2,-0.2 0.781 117.3 37.1 -67.8 -33.4 -5.6 -8.2 -11.0 97 97 A L H >< S+ 0 0 42 -4,-2.1 2,-1.7 1,-0.2 3,-1.0 0.869 106.0 67.4 -73.8 -41.6 -4.4 -10.8 -8.4 98 98 A K T 3< S+ 0 0 104 -4,-0.7 -1,-0.2 -5,-0.4 -2,-0.1 -0.396 79.2 79.4 -97.3 58.3 -6.4 -13.8 -9.6 99 99 A H T 3 + 0 0 96 -2,-1.7 -1,-0.3 -3,-0.2 -2,-0.1 0.294 65.1 80.9-151.1 -4.5 -4.8 -14.4 -13.0 100 100 A S S < S- 0 0 70 -3,-1.0 -2,-0.1 -50,-0.0 -3,-0.0 0.402 118.1 -3.8 -70.9 -1.5 -1.6 -16.3 -12.0 101 101 A G 0 0 40 0, 0.0 -51,-0.0 0, 0.0 0, 0.0 -0.892 360.0 360.0-168.6-171.0 -4.2 -19.1 -11.9 102 102 A P 0 0 163 0, 0.0 -4,-0.1 0, 0.0 0, 0.0 0.802 360.0 360.0 -45.5 360.0 -8.0 -20.0 -12.4