==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=31-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER RNA BINDING PROTEIN 27-JUN-06 2HGM . COMPND 2 MOLECULE: HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN F; . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR C.DOMINGUEZ,F.H.-T.ALLAIN . 92 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 5194.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 54 58.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 17 18.5 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 1 1.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 7 7.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 13 14.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 12 13.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 1 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 1 0 2 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 103 A N > 0 0 121 0, 0.0 2,-2.2 0, 0.0 3,-1.9 0.000 360.0 360.0 360.0 142.3 3.5 15.4 4.0 2 104 A S T 3 - 0 0 64 1,-0.3 83,-0.5 3,-0.0 3,-0.1 -0.020 360.0 -11.3 42.6 -20.3 3.3 12.3 6.5 3 105 A A T 3 S+ 0 0 34 -2,-2.2 81,-0.4 81,-0.3 2,-0.3 0.270 128.7 25.9-160.2 -30.1 -0.6 12.0 5.8 4 106 A D < + 0 0 91 -3,-1.9 -1,-0.2 79,-0.1 81,-0.1 -0.993 45.7 113.6-149.3 136.9 -1.7 15.1 3.9 5 107 A S S S- 0 0 80 -2,-0.3 -1,-0.1 -3,-0.1 -3,-0.0 0.040 83.2 -75.9-147.3 -47.5 -1.1 18.0 1.6 6 108 A A S S+ 0 0 70 0, 0.0 54,-1.6 0, 0.0 55,-0.4 0.134 114.1 16.3-175.2 -41.9 -3.0 17.6 -1.7 7 109 A N S S+ 0 0 103 52,-0.3 2,-1.7 53,-0.1 50,-0.1 0.709 97.2 85.8-124.5 -32.3 -1.4 15.0 -4.0 8 110 A D + 0 0 24 51,-0.1 2,-0.9 48,-0.1 78,-0.1 -0.136 56.0 161.6 -70.8 36.1 1.1 12.9 -1.9 9 111 A G + 0 0 0 -2,-1.7 48,-2.8 76,-0.1 2,-0.3 -0.575 9.4 165.0 -61.4 101.4 -1.7 10.5 -0.8 10 112 A F E -AB 56 84A 17 74,-2.2 74,-1.8 -2,-0.9 2,-0.3 -0.765 20.6-155.3-111.0 167.6 -0.0 7.4 0.5 11 113 A V E -AB 55 83A 0 44,-0.9 44,-2.1 -2,-0.3 2,-0.4 -0.947 6.2-142.2-134.1 153.3 -1.4 4.6 2.5 12 114 A R E -AB 54 82A 44 70,-2.7 70,-1.8 -2,-0.3 2,-0.3 -0.987 8.4-163.6-120.6 136.5 0.2 2.1 4.9 13 115 A L E +A 53 0A 0 40,-3.1 40,-1.8 -2,-0.4 68,-0.2 -0.842 9.9 176.7-105.9 147.2 -0.6 -1.6 5.4 14 116 A R E +A 52 0A 92 66,-0.4 66,-0.4 -2,-0.3 38,-0.3 -0.653 64.3 63.6-152.7 77.2 0.6 -3.7 8.5 15 117 A G + 0 0 26 36,-1.7 64,-1.3 64,-0.2 63,-0.5 0.382 61.3 149.5 175.1 9.4 -0.9 -7.1 8.2 16 118 A L - 0 0 18 35,-1.3 62,-0.1 62,-0.2 34,-0.1 -0.357 37.9-121.5 -80.4 155.4 0.4 -9.0 5.1 17 119 A P > - 0 0 10 0, 0.0 3,-1.6 0, 0.0 33,-0.2 -0.177 47.1 -61.5 -84.1 175.8 1.0 -12.8 4.6 18 120 A F T 3 S+ 0 0 183 1,-0.3 58,-0.1 31,-0.1 59,-0.1 -0.373 123.1 12.4 -64.0 135.2 4.1 -14.8 3.7 19 121 A G T 3 S+ 0 0 50 1,-0.2 -1,-0.3 -2,-0.1 32,-0.1 0.620 88.8 170.1 69.6 15.1 5.6 -13.9 0.3 20 122 A C < + 0 0 4 -3,-1.6 2,-0.3 30,-0.3 -1,-0.2 -0.226 5.5 168.6 -58.3 147.4 3.4 -10.7 0.0 21 123 A T >> - 0 0 69 1,-0.1 3,-1.7 32,-0.0 4,-1.1 -0.933 48.8 -79.3-151.1 171.9 4.2 -8.3 -2.9 22 124 A K H >> S+ 0 0 47 -2,-0.3 4,-3.2 1,-0.3 3,-1.0 0.848 118.2 62.0 -38.4 -53.6 3.2 -5.2 -4.9 23 125 A E H 3> S+ 0 0 124 1,-0.3 4,-0.6 2,-0.2 -1,-0.3 0.718 101.4 52.5 -62.5 -19.8 0.7 -7.2 -7.1 24 126 A E H <> S+ 0 0 52 -3,-1.7 4,-1.4 2,-0.2 -1,-0.3 0.841 114.3 42.8 -80.0 -29.4 -1.4 -8.1 -4.1 25 127 A I H < S+ 0 0 98 -4,-0.6 3,-0.5 -5,-0.3 4,-0.2 0.749 108.9 59.6 -96.4 -26.3 -5.2 -5.9 -6.6 28 130 A F H 3< S+ 0 0 1 -4,-1.4 3,-0.4 1,-0.2 -2,-0.2 0.956 121.8 25.1 -58.8 -51.9 -6.1 -4.4 -3.2 29 131 A F T >< S+ 0 0 1 -4,-2.6 3,-1.9 1,-0.2 -1,-0.2 -0.005 79.4 118.5-112.7 31.0 -6.4 -0.9 -4.8 30 132 A S T < S+ 0 0 97 -3,-0.5 -1,-0.2 1,-0.3 -2,-0.1 0.732 72.5 73.0 -53.2 -21.9 -7.2 -2.1 -8.4 31 133 A G T 3 S+ 0 0 61 -3,-0.4 -1,-0.3 -4,-0.2 2,-0.2 0.726 102.5 36.9 -53.3 -31.9 -10.3 -0.0 -7.4 32 134 A L S < S- 0 0 42 -3,-1.9 2,-0.4 31,-0.0 -3,-0.0 -0.723 86.5 -90.0-137.3 166.2 -8.3 3.3 -7.7 33 135 A E + 0 0 130 -2,-0.2 25,-1.6 26,-0.0 26,-0.4 -0.707 39.8 175.9 -92.3 134.8 -5.7 5.3 -9.5 34 136 A I E -C 57 0A 43 -2,-0.4 23,-0.3 23,-0.4 24,-0.2 -0.957 37.5 -98.9-137.3 140.6 -2.0 5.1 -8.4 35 137 A V E > - 0 0 64 21,-1.0 3,-2.9 22,-0.4 21,-0.1 -0.292 58.8 -84.5 -62.1 156.1 1.2 6.7 -9.9 36 138 A P E 3 S+ 0 0 130 0, 0.0 -1,-0.1 0, 0.0 -2,-0.0 0.574 125.2 9.2 -54.2 -19.2 3.2 4.2 -12.1 37 139 A N E 3 S+ 0 0 131 19,-0.1 2,-2.4 3,-0.0 -2,-0.1 -0.094 85.2 146.3-138.8 35.5 5.2 2.5 -9.2 38 140 A G E < + 0 0 6 -3,-2.9 18,-1.1 18,-0.2 2,-0.3 -0.223 44.7 90.1 -70.1 45.3 3.2 4.2 -6.4 39 141 A I E -C 55 0A 14 -2,-2.4 2,-0.4 16,-0.3 16,-0.3 -0.985 58.3-159.5-143.6 136.1 3.5 1.1 -4.0 40 142 A T E -C 54 0A 32 14,-2.6 14,-2.3 -2,-0.3 -2,-0.0 -0.987 9.1-172.0-132.5 131.5 6.4 0.5 -1.4 41 143 A L + 0 0 36 -2,-0.4 12,-0.2 12,-0.2 3,-0.1 -0.835 21.4 152.1-124.9 84.1 7.5 -2.9 0.2 42 144 A P - 0 0 18 0, 0.0 2,-0.3 0, 0.0 -1,-0.1 0.985 59.8 -64.6 -79.7 -65.2 10.1 -2.4 3.0 43 145 A V - 0 0 51 9,-0.4 9,-0.8 5,-0.0 7,-0.3 -0.945 50.3 -82.6-169.8 169.8 9.6 -5.4 5.5 44 146 A D - 0 0 12 7,-0.3 8,-0.1 -2,-0.3 -30,-0.0 -0.261 60.0 -81.6 -68.5 173.3 7.2 -6.9 7.9 45 147 A P S S+ 0 0 89 0, 0.0 -1,-0.1 0, 0.0 -31,-0.0 0.422 131.6 37.9 -57.4 -2.0 6.7 -5.8 11.6 46 148 A E S S- 0 0 160 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.635 113.4-110.2-124.7 -31.9 9.8 -7.9 12.7 47 149 A G S S+ 0 0 45 0, 0.0 -4,-0.0 0, 0.0 3,-0.0 0.788 88.8 89.4 114.0 37.7 12.2 -7.4 9.7 48 150 A K S S+ 0 0 130 0, 0.0 2,-0.1 0, 0.0 -5,-0.0 0.366 94.1 6.1-135.3 -3.0 12.6 -10.6 7.5 49 151 A I S S- 0 0 35 -31,-0.0 -31,-0.1 -5,-0.0 2,-0.0 -0.046 91.2 -73.4-143.7-119.0 9.8 -10.4 4.9 50 152 A T + 0 0 25 -7,-0.3 -30,-0.3 -33,-0.2 -6,-0.2 -0.542 62.3 134.4-172.8 73.3 7.0 -7.9 3.7 51 153 A G S S+ 0 0 4 1,-0.1 -36,-1.7 -32,-0.1 -35,-1.3 0.291 72.1 49.8-120.3 6.5 4.1 -7.7 6.2 52 154 A E E +A 14 0A 27 -9,-0.8 -9,-0.4 -38,-0.3 2,-0.3 -0.965 68.9 151.8-132.1 156.5 3.9 -4.0 6.1 53 155 A A E -A 13 0A 0 -40,-1.8 -40,-3.1 -2,-0.3 2,-0.3 -0.930 25.2-137.6-166.2 175.4 3.8 -1.9 2.9 54 156 A F E -AC 12 40A 0 -14,-2.3 -14,-2.6 -2,-0.3 2,-0.3 -0.917 4.1-153.8-149.1 164.6 2.6 1.4 1.5 55 157 A V E -AC 11 39A 0 -44,-2.1 -44,-0.9 -16,-0.3 2,-0.5 -0.859 5.7-153.9-159.4 119.5 0.9 3.0 -1.6 56 158 A Q E -A 10 0A 20 -18,-1.1 -21,-1.0 -2,-0.3 -46,-0.3 -0.797 19.1-165.3 -90.4 123.5 0.9 6.4 -3.3 57 159 A F E - C 0 34A 0 -48,-2.8 -22,-0.4 -2,-0.5 -23,-0.4 -0.004 41.5 -92.6 -89.1-165.5 -2.2 7.2 -5.4 58 160 A A S S+ 0 0 35 -25,-1.6 2,-0.3 1,-0.2 -24,-0.1 0.579 107.3 11.1 -80.7 -10.3 -2.7 10.1 -7.9 59 161 A S S > S- 0 0 45 -26,-0.4 4,-1.6 -50,-0.2 -52,-0.3 -0.993 75.4-107.5-158.5 161.0 -4.1 12.2 -5.0 60 162 A Q T 4 S+ 0 0 11 -54,-1.6 4,-0.2 -2,-0.3 -53,-0.1 0.762 119.2 52.9 -58.6 -28.1 -4.6 12.5 -1.2 61 163 A E T >> S+ 0 0 120 -55,-0.4 4,-1.9 2,-0.2 3,-1.7 0.928 105.1 49.9 -80.1 -48.1 -8.4 11.8 -1.8 62 164 A L H 3> S+ 0 0 41 1,-0.3 4,-1.5 2,-0.2 -2,-0.2 0.879 106.4 59.8 -53.6 -37.7 -7.9 8.5 -3.8 63 165 A A H 3X S+ 0 0 0 -4,-1.6 4,-0.9 1,-0.2 -1,-0.3 0.653 107.4 44.2 -72.9 -8.9 -5.6 7.5 -0.9 64 166 A E H <> S+ 0 0 74 -3,-1.7 4,-1.4 2,-0.2 -2,-0.2 0.670 103.0 61.3-113.0 -15.3 -8.6 7.8 1.6 65 167 A K H < S+ 0 0 91 -4,-1.9 -2,-0.2 2,-0.2 -3,-0.1 0.885 107.1 51.9 -60.0 -37.5 -11.1 6.1 -0.6 66 168 A A H >< S+ 0 0 0 -4,-1.5 3,-2.1 2,-0.2 4,-0.3 0.908 101.6 53.9 -67.8 -46.3 -8.4 3.4 -0.0 67 169 A L H >< S+ 0 0 48 -4,-0.9 3,-1.9 1,-0.3 -1,-0.2 0.871 97.4 72.1 -48.0 -35.1 -8.5 3.7 3.8 68 170 A G T 3< S+ 0 0 61 -4,-1.4 -1,-0.3 1,-0.3 -2,-0.2 0.614 77.3 74.7 -59.4 -15.2 -12.2 3.1 3.1 69 171 A K T X S- 0 0 54 -3,-2.1 2,-2.6 1,-0.2 3,-0.6 0.744 75.4-176.0 -64.6 -26.3 -11.3 -0.6 2.3 70 172 A H T < - 0 0 136 -3,-1.9 11,-0.2 -4,-0.3 -1,-0.2 -0.230 64.1 -16.1 60.6 -47.6 -10.9 -1.1 6.1 71 173 A K T 3 S+ 0 0 71 -2,-2.6 -1,-0.2 9,-0.1 -2,-0.1 0.464 74.6 149.0-145.1 -66.8 -9.7 -4.8 6.0 72 174 A E < - 0 0 87 -3,-0.6 2,-0.3 1,-0.0 -44,-0.0 -0.090 51.4 -89.4 36.8-142.3 -10.2 -7.0 2.9 73 175 A R - 0 0 119 -49,-0.1 2,-0.3 5,-0.0 5,-0.2 -0.983 24.9-162.5-151.3 155.5 -7.5 -9.7 2.3 74 176 A I B > S-D 77 0B 2 3,-2.4 3,-2.9 -2,-0.3 2,-0.8 -0.974 76.0 -40.2-132.9 135.8 -4.1 -10.3 0.7 75 177 A G T 3 S- 0 0 23 -2,-0.3 -59,-0.0 1,-0.3 -56,-0.0 -0.274 127.4 -29.0 49.0 -86.9 -2.9 -14.0 0.1 76 178 A H T 3 S+ 0 0 140 -2,-0.8 -1,-0.3 -58,-0.1 2,-0.2 0.229 119.9 88.8-134.4 5.0 -4.2 -15.5 3.4 77 179 A R B < -D 74 0B 135 -3,-2.9 -3,-2.4 -59,-0.1 -61,-0.1 -0.605 66.2-126.7-129.5-179.5 -4.0 -12.4 5.8 78 180 A Y - 0 0 138 -63,-0.5 -62,-0.2 -5,-0.2 -3,-0.0 -0.027 29.3-152.1-146.8 14.1 -5.9 -9.5 7.0 79 181 A I - 0 0 1 -64,-1.3 -64,-0.2 -5,-0.1 2,-0.1 0.700 6.5-135.2 43.0 107.1 -4.3 -6.2 6.7 80 182 A E - 0 0 57 -66,-0.4 -66,-0.4 2,-0.0 2,-0.3 -0.405 19.8-143.2 -70.3 165.1 -4.6 -3.0 8.6 81 183 A V + 0 0 27 -11,-0.2 2,-0.3 -68,-0.2 -68,-0.2 -0.999 22.9 163.0-139.6 140.3 -4.9 0.5 7.0 82 184 A F E -B 12 0A 75 -70,-1.8 -70,-2.7 -2,-0.3 2,-0.1 -0.985 39.7-100.9-144.4 153.2 -3.5 3.9 7.9 83 185 A K E +B 11 0A 60 -2,-0.3 2,-0.3 -72,-0.2 -72,-0.2 -0.369 50.8 161.7 -74.3 154.6 -3.0 7.3 6.1 84 186 A S E -B 10 0A 0 -74,-1.8 -74,-2.2 -81,-0.4 -81,-0.3 -0.955 30.4-150.9-159.0 168.0 0.6 8.1 5.0 85 187 A S >> - 0 0 0 -83,-0.5 3,-3.0 -2,-0.3 4,-1.3 -0.941 51.7 -79.2-149.4 161.9 3.1 10.1 2.8 86 188 A Q H 3> S+ 0 0 91 1,-0.3 4,-0.6 -2,-0.3 -77,-0.0 0.362 126.6 46.4 -31.6 -10.6 6.6 9.3 1.3 87 189 A E H 34 S+ 0 0 88 -2,-0.6 -1,-0.3 2,-0.2 -3,-0.0 0.453 110.4 48.8-131.3 -6.3 8.5 10.0 4.6 88 190 A E H <4 S+ 0 0 73 -3,-3.0 -2,-0.2 3,-0.0 3,-0.2 0.579 119.6 48.1 -80.7 -23.1 6.2 8.0 6.9 89 191 A V H < S+ 0 0 0 -4,-1.3 2,-2.1 1,-0.2 3,-0.3 0.806 82.9 85.1 -91.5 -35.6 6.8 5.4 4.1 90 192 A R < + 0 0 133 -4,-0.6 -1,-0.2 1,-0.2 -4,-0.0 -0.234 34.0 143.9 -82.9 53.4 10.5 5.1 3.3 91 193 A S 0 0 79 -2,-2.1 -1,-0.2 -3,-0.2 -2,-0.1 0.637 360.0 360.0 -58.9 -13.5 11.5 2.6 6.0 92 194 A Y 0 0 195 -3,-0.3 -2,-0.2 -49,-0.0 -1,-0.1 0.373 360.0 360.0-132.8 360.0 13.8 1.5 3.0