==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=3-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER VIRAL PROTEIN 06-DEC-98 1HHV . COMPND 2 MOLECULE: VIRUS CHEMOKINE VMIP-II; . SOURCE 2 SYNTHETIC: YES; . AUTHOR W.SHAO,E.FERNANDEZ,J.M.NAVENOT,J.WILKEN,D.A.THOMPSON, . 73 1 2 2 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 6234.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 30 41.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 2 2.7 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 10 13.7 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 1 1.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 4 5.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 4 5.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 7 9.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A G 0 0 123 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0-161.5 -0.2 -34.1 1.8 2 2 A D + 0 0 142 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.293 360.0 162.2-158.9 -50.7 -3.2 -32.6 0.1 3 3 A T - 0 0 129 2,-0.1 0, 0.0 1,-0.0 0, 0.0 -0.114 62.9 -64.0 48.6-147.7 -6.0 -35.2 -0.7 4 4 A L + 0 0 156 2,-0.1 3,-0.1 1,-0.0 -1,-0.0 0.787 51.2 170.8 -98.6 -86.9 -9.3 -33.5 -1.5 5 5 A G - 0 0 68 1,-0.2 2,-0.5 2,-0.1 3,-0.4 0.786 19.5-175.2 79.4 25.3 -10.9 -31.6 1.5 6 6 A A + 0 0 90 1,-0.2 -1,-0.2 3,-0.0 -2,-0.1 -0.371 36.8 118.4 -58.0 109.8 -13.6 -30.1 -0.7 7 7 A S + 0 0 108 -2,-0.5 -1,-0.2 -3,-0.1 -2,-0.1 0.473 51.6 71.5-144.6 -33.8 -15.4 -27.7 1.6 8 8 A W S S- 0 0 219 -3,-0.4 -3,-0.0 1,-0.1 0, 0.0 -0.012 88.8-105.0 -77.1-169.8 -15.1 -24.1 0.3 9 9 A H - 0 0 181 -3,-0.0 -1,-0.1 0, 0.0 -3,-0.0 -0.248 68.0 -78.9-113.6 46.3 -16.9 -22.8 -2.8 10 10 A R - 0 0 228 2,-0.0 -4,-0.0 0, 0.0 0, 0.0 0.974 61.8-160.6 56.7 82.2 -13.9 -22.7 -5.2 11 11 A P - 0 0 89 0, 0.0 2,-0.1 0, 0.0 -3,-0.0 0.207 13.5-177.5 -74.4-159.6 -12.1 -19.6 -4.2 12 12 A D - 0 0 155 0, 0.0 2,-0.3 0, 0.0 -2,-0.0 -0.205 39.9 -46.7-163.7 -98.1 -9.6 -17.7 -6.4 13 13 A K + 0 0 171 1,-0.1 3,-0.1 -2,-0.1 0, 0.0 -0.963 36.5 164.0-151.6 168.2 -7.5 -14.6 -5.5 14 14 A a - 0 0 65 1,-0.5 2,-0.3 -2,-0.3 -1,-0.1 0.376 66.8 -25.2-158.3 -33.6 -7.9 -11.1 -3.9 15 15 A b S S- 0 0 43 39,-0.0 -1,-0.5 3,-0.0 3,-0.1 -0.974 71.4 -78.8-171.6-176.8 -4.5 -9.6 -2.9 16 16 A L - 0 0 131 -2,-0.3 2,-2.8 1,-0.2 38,-0.1 0.217 63.7-118.0 -84.6 17.9 -0.9 -10.4 -2.0 17 17 A G S S- 0 0 23 23,-0.2 2,-0.2 38,-0.1 -1,-0.2 -0.334 81.0 -25.5 78.4 -61.9 -2.1 -11.2 1.5 18 18 A Y S S- 0 0 54 -2,-2.8 37,-0.3 37,-0.1 26,-0.1 -0.714 78.5 -91.0 178.6 126.7 0.0 -8.4 2.9 19 19 A Q - 0 0 40 35,-3.1 37,-0.2 -2,-0.2 4,-0.1 -0.157 36.6-173.7 -45.3 128.3 3.2 -6.7 1.6 20 20 A K + 0 0 206 2,-0.1 -1,-0.2 35,-0.1 3,-0.1 0.835 64.2 61.7 -95.8 -40.3 6.2 -8.6 3.1 21 21 A R S S- 0 0 200 1,-0.1 2,-0.2 0, 0.0 0, 0.0 -0.458 99.9 -91.0 -83.8 160.3 9.0 -6.3 1.9 22 22 A P - 0 0 114 0, 0.0 -1,-0.1 0, 0.0 -2,-0.1 -0.454 41.9-160.5 -71.5 138.1 9.2 -2.7 2.9 23 23 A L - 0 0 32 -2,-0.2 42,-0.1 -4,-0.1 -4,-0.0 -0.981 5.0-145.3-127.7 129.5 7.5 -0.2 0.6 24 24 A P - 0 0 69 0, 0.0 4,-0.0 0, 0.0 41,-0.0 -0.059 6.6-143.3 -77.1-177.0 8.2 3.5 0.3 25 25 A Q S > S+ 0 0 23 2,-0.1 3,-0.8 3,-0.0 37,-0.0 0.653 90.4 66.6-121.2 -34.3 5.5 6.2 -0.5 26 26 A V T 3 S+ 0 0 125 1,-0.2 39,-0.0 0, 0.0 3,-0.0 0.571 104.4 52.3 -67.9 -3.0 7.3 8.7 -2.7 27 27 A L T 3 S+ 0 0 109 20,-0.0 21,-0.5 2,-0.0 -1,-0.2 0.662 103.4 62.2-104.6 -21.3 7.5 5.9 -5.3 28 28 A L < - 0 0 7 -3,-0.8 19,-0.3 19,-0.2 20,-0.1 -0.554 69.3-143.4-100.5 168.8 3.8 4.9 -5.3 29 29 A S - 0 0 53 17,-3.1 2,-0.2 1,-0.3 18,-0.2 0.880 59.7 -39.2 -96.1 -74.0 0.7 7.1 -6.3 30 30 A S E -A 46 0A 18 16,-1.1 16,-2.7 17,-0.5 -1,-0.3 -0.763 48.5-142.7-142.4-170.8 -2.3 6.3 -4.1 31 31 A W E -Ab 45 71A 23 39,-1.9 41,-2.4 14,-0.3 14,-0.3 -0.807 3.6-149.3-145.1-172.1 -4.2 3.5 -2.4 32 32 A Y E -A 44 0A 85 12,-2.4 12,-1.7 39,-0.2 41,-0.1 -0.882 23.6-111.6-170.3 134.6 -7.7 2.3 -1.6 33 33 A P E -A 43 0A 66 0, 0.0 10,-0.2 0, 0.0 2,-0.2 -0.318 32.4-147.2 -67.6 148.5 -9.3 0.2 1.2 34 34 A T - 0 0 42 8,-2.0 2,-0.2 1,-0.0 8,-0.0 -0.525 16.4-103.1-109.7-179.9 -10.7 -3.2 0.4 35 35 A S > - 0 0 76 -2,-0.2 3,-0.9 6,-0.1 5,-0.2 -0.682 19.9-124.1-103.2 159.5 -13.7 -5.3 1.7 36 36 A Q T 3 S+ 0 0 160 -2,-0.2 -1,-0.1 1,-0.2 -2,-0.0 0.329 92.3 95.1 -83.3 12.0 -13.6 -8.2 4.2 37 37 A L T 3 S+ 0 0 160 3,-0.1 -1,-0.2 2,-0.0 -3,-0.0 0.749 77.3 66.4 -74.2 -20.2 -15.5 -10.3 1.6 38 38 A a S < S- 0 0 56 -3,-0.9 -24,-0.1 1,-0.1 -4,-0.0 0.047 109.4 -87.5 -83.4-160.9 -12.1 -11.7 0.3 39 39 A S S S+ 0 0 114 1,-0.3 -3,-0.1 -24,-0.0 -1,-0.1 0.633 114.9 10.1 -87.1 -12.6 -9.7 -13.9 2.3 40 40 A K S S- 0 0 96 -5,-0.2 -1,-0.3 2,-0.0 -23,-0.2 -0.533 72.2-163.6-169.1 96.2 -7.9 -10.9 3.9 41 41 A P + 0 0 24 0, 0.0 2,-0.3 0, 0.0 -5,-0.1 -0.067 35.4 111.6 -71.6 177.7 -9.1 -7.3 3.7 42 42 A G - 0 0 19 14,-0.1 -8,-2.0 15,-0.1 2,-0.4 -0.979 68.9 -39.5 154.5-139.5 -6.9 -4.4 4.5 43 43 A V E -AC 33 55A 2 12,-1.7 12,-3.1 -2,-0.3 2,-0.3 -0.977 44.7-165.0-128.5 128.4 -5.3 -1.5 2.5 44 44 A I E -AC 32 54A 2 -12,-1.7 -12,-2.4 -2,-0.4 10,-0.3 -0.830 10.1-149.6-109.6 148.0 -3.9 -1.8 -1.0 45 45 A F E -AC 31 53A 0 8,-1.7 8,-2.5 -2,-0.3 2,-0.4 -0.571 2.2-142.4-109.2 176.6 -1.6 0.8 -2.7 46 46 A L E -AC 30 52A 26 -16,-2.7 -17,-3.1 6,-0.3 -16,-1.1 -0.960 11.0-141.4-143.3 122.9 -1.1 1.8 -6.3 47 47 A T - 0 0 17 4,-3.2 -17,-0.5 -2,-0.4 -19,-0.2 0.309 40.2 -92.9 -61.5-156.7 2.2 2.9 -7.9 48 48 A K S S+ 0 0 141 -21,-0.5 -1,-0.1 -19,-0.2 -20,-0.1 0.249 116.5 37.4-106.5 11.0 2.4 5.7 -10.4 49 49 A R S S- 0 0 167 2,-0.2 -21,-0.0 0, 0.0 -3,-0.0 0.552 126.1 -60.4-122.4 -82.2 2.0 3.4 -13.4 50 50 A G S S+ 0 0 62 2,-0.0 2,-0.5 0, 0.0 -2,-0.0 0.143 89.2 116.9-162.9 25.5 -0.3 0.4 -13.0 51 51 A R - 0 0 182 2,-0.0 -4,-3.2 0, 0.0 2,-0.3 -0.873 43.4-160.4-106.1 132.5 1.0 -1.8 -10.2 52 52 A Q E -C 46 0A 120 -2,-0.5 2,-0.3 -6,-0.2 -6,-0.3 -0.789 3.0-161.2-109.7 154.5 -1.1 -2.3 -7.0 53 53 A V E -C 45 0A 25 -8,-2.5 -8,-1.7 -2,-0.3 2,-0.4 -0.896 6.9-149.6-130.2 161.0 0.1 -3.4 -3.6 54 54 A b E +C 44 0A 2 -10,-0.3 -35,-3.1 -2,-0.3 2,-0.3 -0.950 26.2 155.0-135.0 117.4 -1.7 -4.9 -0.5 55 55 A A E -C 43 0A 0 -12,-3.1 -12,-1.7 -2,-0.4 2,-0.8 -0.970 52.4 -90.3-139.8 156.5 -0.5 -4.3 3.1 56 56 A D > - 0 0 45 -2,-0.3 3,-3.7 -37,-0.2 7,-0.2 -0.494 32.3-141.8 -67.1 107.6 -2.0 -4.4 6.6 57 57 A K T 3 S+ 0 0 103 -2,-0.8 6,-0.2 1,-0.3 -1,-0.2 0.784 101.5 69.1 -41.6 -25.0 -3.2 -0.8 7.1 58 58 A S T 3 S+ 0 0 73 4,-0.1 2,-0.6 5,-0.1 -1,-0.3 0.416 73.5 113.8 -78.0 7.2 -2.0 -1.4 10.6 59 59 A K <> - 0 0 90 -3,-3.7 4,-3.4 1,-0.2 3,-0.3 -0.675 68.6-139.5 -82.3 118.8 1.6 -1.5 9.3 60 60 A D H > S+ 0 0 135 -2,-0.6 4,-1.9 1,-0.3 5,-0.2 0.920 105.2 45.7 -40.5 -59.9 3.6 1.5 10.7 61 61 A W H > S+ 0 0 63 1,-0.2 4,-1.6 2,-0.2 -1,-0.3 0.909 115.6 48.8 -54.8 -39.2 5.3 2.1 7.3 62 62 A V H > S+ 0 0 0 -3,-0.3 4,-2.4 2,-0.2 5,-0.4 0.976 101.9 60.0 -66.5 -52.7 1.9 1.7 5.6 63 63 A K H X S+ 0 0 127 -4,-3.4 4,-1.5 1,-0.3 -1,-0.2 0.914 104.9 51.6 -41.8 -47.4 0.1 4.1 7.9 64 64 A K H X S+ 0 0 109 -4,-1.9 4,-1.8 -5,-0.3 3,-0.5 0.955 109.3 50.8 -56.7 -46.2 2.5 6.7 6.7 65 65 A L H >X S+ 0 0 1 -4,-1.6 4,-3.4 -3,-0.4 3,-0.6 0.977 108.3 49.6 -55.6 -57.2 1.7 5.8 3.1 66 66 A X H 3< S+ 0 0 35 -4,-2.4 -1,-0.3 1,-0.2 -2,-0.2 0.779 108.4 57.9 -55.0 -23.1 -2.1 6.1 3.7 67 67 A Q H 3< S+ 0 0 151 -4,-1.5 -1,-0.2 -3,-0.5 -2,-0.2 0.907 117.1 29.0 -76.4 -40.5 -1.3 9.5 5.2 68 68 A Q H << S+ 0 0 105 -4,-1.8 -2,-0.2 -3,-0.6 -3,-0.1 0.768 113.7 73.1 -90.2 -26.7 0.4 10.9 2.1 69 69 A L S < S- 0 0 6 -4,-3.4 2,-0.3 -5,-0.3 -39,-0.2 -0.638 84.6-118.8 -90.2 148.7 -1.6 8.9 -0.4 70 70 A P - 0 0 79 0, 0.0 2,-2.4 0, 0.0 -39,-1.9 -0.650 26.9-114.1 -85.0 135.8 -5.2 9.5 -1.3 71 71 A V B -b 31 0A 73 -2,-0.3 -39,-0.2 -41,-0.2 -26,-0.1 -0.407 40.3-143.8 -69.7 80.9 -7.7 6.7 -0.6 72 72 A T 0 0 58 -41,-2.4 -3,-0.0 -2,-2.4 -1,-0.0 0.109 360.0 360.0 -38.1 160.9 -8.6 6.1 -4.2 73 73 A A 0 0 143 -41,-0.1 -1,-0.0 0, 0.0 -41,-0.0 -0.976 360.0 360.0 176.3 360.0 -12.2 5.2 -4.8