==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=31-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER RNA BINDING PROTEIN 27-JUN-06 2HH2 . COMPND 2 MOLECULE: KH-TYPE SPLICING REGULATORY PROTEIN; . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR M.F.GARCIA-MAYORAL . 79 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 4832.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 55 69.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 15 19.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 1 1.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 8 10.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 9 11.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 20 25.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 1 1.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 1 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 7 A G 0 0 90 0, 0.0 2,-0.2 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 125.9 -3.4 -8.6 -10.9 2 8 A E - 0 0 109 52,-0.1 2,-0.3 1,-0.1 52,-0.2 -0.453 360.0-140.8 -70.0 137.2 -1.4 -6.3 -8.6 3 9 A M E -A 53 0A 73 50,-1.7 50,-2.9 -2,-0.2 2,-0.4 -0.782 4.2-142.9-107.7 144.9 -3.5 -3.5 -7.1 4 10 A T E -AB 52 78A 12 74,-1.1 74,-2.8 -2,-0.3 2,-0.3 -0.840 15.9-171.7-106.5 139.7 -2.6 0.1 -6.4 5 11 A F E -AB 51 77A 1 46,-2.3 46,-2.9 -2,-0.4 2,-0.8 -0.955 29.7-108.3-130.5 151.9 -3.7 2.1 -3.3 6 12 A S E -A 50 0A 23 70,-1.1 70,-0.2 -2,-0.3 44,-0.2 -0.691 35.0-176.6 -84.9 108.8 -3.4 5.7 -2.4 7 13 A I E -A 49 0A 2 42,-2.7 42,-2.2 -2,-0.8 5,-0.1 -0.916 25.8-125.7-109.2 111.8 -0.8 6.2 0.4 8 14 A P E > -A 48 0A 17 0, 0.0 3,-1.4 0, 0.0 40,-0.3 -0.278 13.7-130.9 -51.4 133.2 -0.4 9.8 1.6 9 15 A T G > S+ 0 0 40 38,-2.3 3,-1.0 1,-0.3 39,-0.1 0.805 108.4 55.9 -58.1 -32.3 3.2 11.1 1.5 10 16 A H G 3 S+ 0 0 154 37,-0.4 3,-0.3 1,-0.2 -1,-0.3 0.717 103.2 55.1 -75.4 -19.4 2.9 12.2 5.1 11 17 A K G X>>S+ 0 0 40 -3,-1.4 4,-1.8 1,-0.2 3,-1.0 0.365 75.7 101.1 -94.3 7.6 1.9 8.7 6.3 12 18 A C T <45S+ 0 0 44 -3,-1.0 8,-0.3 1,-0.2 -1,-0.2 0.292 79.1 56.8 -75.2 13.3 5.0 7.2 4.7 13 19 A G T 345S+ 0 0 46 -3,-0.3 -1,-0.2 3,-0.2 -2,-0.1 0.593 107.8 40.6-117.0 -19.0 6.4 7.1 8.2 14 20 A L T <45S+ 0 0 92 -3,-1.0 -2,-0.2 -4,-0.1 4,-0.1 0.869 133.9 19.6 -90.5 -48.1 3.8 5.1 10.1 15 21 A V T <5S+ 0 0 1 -4,-1.8 8,-0.5 2,-0.1 -3,-0.2 0.761 139.3 34.5 -91.1 -28.6 3.1 2.4 7.4 16 22 A I S >XS- 0 0 5 -5,-0.7 5,-2.4 1,-0.2 4,-1.5 0.670 88.0-169.8-101.3 -20.3 6.2 2.9 5.4 17 23 A G T 45 - 0 0 20 -6,-0.3 -1,-0.2 3,-0.2 -2,-0.1 -0.526 60.2 -32.7 69.2-124.5 8.5 3.7 8.4 18 24 A R T 45S- 0 0 243 -2,-0.4 -1,-0.2 -4,-0.1 -2,-0.1 0.889 138.1 -3.3 -93.5 -65.0 11.9 5.0 7.2 19 25 A G T 45S- 0 0 72 -6,-0.1 -2,-0.2 -3,-0.1 -6,-0.1 -0.303 126.6 -58.2-126.7 50.1 12.5 3.2 3.9 20 26 A G T <5S+ 0 0 14 -4,-1.5 4,-0.4 -8,-0.3 -3,-0.2 0.948 86.6 145.0 77.3 52.6 9.6 0.8 3.6 21 27 A E >>< + 0 0 107 -5,-2.4 4,-0.8 2,-0.1 3,-0.7 0.950 68.3 38.9 -86.1 -57.0 10.0 -1.1 6.8 22 28 A N H >> S+ 0 0 47 1,-0.2 4,-1.7 2,-0.2 3,-0.6 0.837 108.3 64.4 -68.4 -31.8 6.5 -1.9 8.0 23 29 A V H 3> S+ 0 0 7 -8,-0.5 4,-1.4 1,-0.3 11,-0.5 0.816 100.4 50.6 -63.7 -31.0 5.2 -2.6 4.5 24 30 A K H <> S+ 0 0 89 -3,-0.7 4,-1.5 -4,-0.4 -1,-0.3 0.716 104.9 57.3 -83.2 -18.2 7.5 -5.6 4.1 25 31 A A H < S+ 0 0 43 -4,-1.4 3,-0.6 1,-0.2 -1,-0.2 0.914 107.2 49.0 -52.1 -47.9 4.2 -8.9 3.1 28 34 A Q H 3< S+ 0 0 144 -4,-1.5 -1,-0.2 1,-0.3 -2,-0.2 0.856 111.3 50.3 -63.4 -35.3 5.4 -11.5 5.6 29 35 A Q H 3< S+ 0 0 139 -4,-2.0 -1,-0.3 3,-0.1 -2,-0.2 0.703 132.0 11.6 -72.7 -21.1 1.9 -11.5 7.3 30 36 A T S << S- 0 0 33 -4,-1.2 -3,-0.2 -3,-0.6 -2,-0.2 0.682 89.5-114.3-122.5 -79.0 0.3 -12.0 3.9 31 37 A G S S+ 0 0 34 1,-0.5 2,-0.3 -5,-0.2 -4,-0.1 0.098 76.1 102.3 154.1 -26.3 2.2 -12.9 0.8 32 38 A A S S- 0 0 0 27,-0.3 2,-0.8 -6,-0.2 -1,-0.5 -0.613 73.9-116.2 -88.2 146.8 1.9 -9.9 -1.5 33 39 A F E -C 54 0A 98 21,-2.9 21,-2.7 -2,-0.3 2,-1.2 -0.713 20.6-157.0 -87.2 107.4 4.7 -7.5 -2.0 34 40 A V E +C 53 0A 3 -2,-0.8 2,-0.3 -11,-0.5 19,-0.2 -0.729 28.8 170.5 -84.8 95.7 3.6 -4.1 -0.7 35 41 A E E -C 52 0A 25 17,-3.0 17,-3.4 -2,-1.2 2,-0.4 -0.814 39.0-106.4-115.1 149.3 6.1 -1.9 -2.7 36 42 A I E -C 51 0A 61 -2,-0.3 15,-0.2 15,-0.2 2,-0.1 -0.585 41.4-144.6 -75.7 127.8 6.3 1.9 -3.1 37 43 A S - 0 0 16 13,-2.2 -1,-0.1 -2,-0.4 13,-0.1 -0.276 20.1-149.1 -91.4 173.9 5.2 2.9 -6.6 38 44 A R + 0 0 189 11,-0.1 2,-0.2 -2,-0.1 -1,-0.1 0.143 60.4 121.4-123.0 11.5 6.3 5.6 -9.0 39 45 A Q - 0 0 89 11,-0.2 11,-0.7 1,-0.1 -2,-0.1 -0.497 65.7-119.3 -79.7 144.5 2.8 6.0 -10.6 40 46 A L - 0 0 134 -2,-0.2 9,-0.1 9,-0.1 -2,-0.1 -0.725 30.3-124.7 -80.2 130.4 1.0 9.3 -10.6 41 47 A P > - 0 0 10 0, 0.0 3,-2.0 0, 0.0 -1,-0.1 -0.227 33.2 -95.1 -66.0 164.9 -2.3 9.2 -8.7 42 48 A P T 3 S+ 0 0 104 0, 0.0 -2,-0.0 0, 0.0 36,-0.0 0.822 130.1 50.3 -52.0 -31.6 -5.6 10.2 -10.5 43 49 A N T 3 S- 0 0 132 2,-0.1 -3,-0.0 5,-0.1 0, 0.0 0.644 102.0-137.4 -82.1 -15.7 -5.1 13.7 -9.0 44 50 A G < + 0 0 41 -3,-2.0 -4,-0.0 1,-0.2 -1,-0.0 0.756 54.0 145.2 62.7 26.2 -1.5 13.9 -10.2 45 51 A D > - 0 0 60 1,-0.1 3,-1.6 3,-0.1 -1,-0.2 -0.824 53.3-140.1-103.1 132.5 -0.6 15.3 -6.8 46 52 A P T 3 S+ 0 0 100 0, 0.0 3,-0.1 0, 0.0 -1,-0.1 0.417 95.1 74.1 -72.4 2.0 2.7 14.5 -5.1 47 53 A N T 3 S+ 0 0 96 1,-0.2 -38,-2.3 -39,-0.1 2,-0.5 0.425 89.2 66.0 -92.8 0.1 1.1 14.2 -1.7 48 54 A F E < -A 8 0A 83 -3,-1.6 2,-0.5 -40,-0.3 -1,-0.2 -0.862 69.7-166.6-124.6 96.2 -0.4 10.9 -2.7 49 55 A K E -A 7 0A 89 -42,-2.2 -42,-2.7 -2,-0.5 2,-0.2 -0.705 21.6-130.1 -80.6 123.0 2.1 8.2 -3.3 50 56 A L E -A 6 0A 5 -11,-0.7 -13,-2.2 -2,-0.5 2,-0.4 -0.533 21.6-150.4 -72.5 138.5 0.6 5.2 -5.0 51 57 A F E -AC 5 36A 3 -46,-2.9 -46,-2.3 -15,-0.2 2,-0.7 -0.945 3.0-141.2-117.0 136.1 1.4 1.9 -3.3 52 58 A I E -AC 4 35A 10 -17,-3.4 -17,-3.0 -2,-0.4 2,-1.0 -0.841 12.7-173.7 -98.7 112.9 1.7 -1.5 -5.1 53 59 A I E -AC 3 34A 0 -50,-2.9 -50,-1.7 -2,-0.7 2,-0.6 -0.820 22.8-173.5 -99.5 90.2 0.3 -4.5 -3.4 54 60 A R E + C 0 33A 109 -21,-2.7 -21,-2.9 -2,-1.0 2,-0.3 -0.789 35.6 65.3 -98.0 118.5 1.6 -7.0 -5.9 55 61 A G S S- 0 0 30 -2,-0.6 -23,-0.1 -23,-0.3 -2,-0.1 -0.942 89.6 -27.6 172.7-152.7 0.6 -10.6 -5.5 56 62 A S >> - 0 0 66 -2,-0.3 4,-2.9 1,-0.1 3,-1.2 -0.654 62.6-109.6 -88.3 148.3 -2.5 -12.7 -5.7 57 63 A P H 3> S+ 0 0 91 0, 0.0 4,-3.2 0, 0.0 5,-0.4 0.859 119.3 54.2 -42.3 -48.3 -5.9 -11.1 -4.9 58 64 A Q H 3> S+ 0 0 141 1,-0.2 4,-1.2 2,-0.2 5,-0.1 0.874 115.0 40.2 -55.7 -39.2 -6.2 -13.1 -1.6 59 65 A Q H <> S+ 0 0 66 -3,-1.2 4,-2.2 2,-0.2 -27,-0.3 0.897 116.4 49.6 -78.5 -42.1 -2.8 -11.8 -0.6 60 66 A I H X S+ 0 0 0 -4,-2.9 4,-2.9 2,-0.2 -2,-0.2 0.948 112.4 45.8 -60.8 -53.1 -3.4 -8.3 -1.8 61 67 A D H X S+ 0 0 94 -4,-3.2 4,-1.8 1,-0.2 -1,-0.2 0.852 113.7 49.9 -62.8 -36.3 -6.7 -7.8 -0.2 62 68 A H H X S+ 0 0 79 -4,-1.2 4,-1.5 -5,-0.4 -1,-0.2 0.888 111.6 47.8 -70.8 -39.2 -5.4 -9.2 3.1 63 69 A A H X S+ 0 0 0 -4,-2.2 4,-2.1 2,-0.2 -2,-0.2 0.901 107.3 57.8 -65.4 -41.1 -2.4 -6.9 3.0 64 70 A K H X S+ 0 0 44 -4,-2.9 4,-2.7 1,-0.2 5,-0.2 0.918 105.2 50.6 -49.9 -48.3 -4.8 -4.1 2.2 65 71 A Q H X S+ 0 0 108 -4,-1.8 4,-0.8 1,-0.2 -1,-0.2 0.871 108.5 51.8 -60.0 -39.5 -6.6 -4.9 5.5 66 72 A L H X S+ 0 0 16 -4,-1.5 4,-1.1 2,-0.2 -1,-0.2 0.837 111.6 46.2 -70.0 -32.9 -3.3 -4.8 7.4 67 73 A I H X S+ 0 0 4 -4,-2.1 4,-2.9 2,-0.2 5,-0.4 0.880 109.7 52.8 -75.4 -39.7 -2.5 -1.4 6.0 68 74 A E H < S+ 0 0 40 -4,-2.7 5,-0.4 1,-0.2 4,-0.2 0.669 108.8 52.7 -68.0 -16.7 -6.0 -0.1 6.7 69 75 A E H < S+ 0 0 118 -4,-0.8 -1,-0.2 -5,-0.2 -2,-0.2 0.782 108.8 49.6 -81.5 -33.7 -5.2 -1.4 10.2 70 76 A K H < S+ 0 0 61 -4,-1.1 -2,-0.2 1,-0.2 -3,-0.1 0.945 125.2 27.1 -68.7 -49.9 -2.0 0.6 10.2 71 77 A I S < S- 0 0 22 -4,-2.9 -3,-0.2 2,-0.2 -1,-0.2 0.615 99.0-139.7 -87.1 -14.9 -3.7 3.8 9.1 72 78 A E + 0 0 172 -5,-0.4 -3,-0.2 -4,-0.2 -4,-0.1 0.839 68.9 97.0 56.0 38.6 -7.0 2.7 10.7 73 79 A G S S- 0 0 21 -5,-0.4 2,-0.2 -6,-0.2 -1,-0.2 -0.958 82.7 -82.9-150.2 162.9 -8.7 4.1 7.7 74 80 A P - 0 0 115 0, 0.0 2,-0.4 0, 0.0 -9,-0.0 -0.502 36.3-149.9 -74.3 132.6 -10.2 3.1 4.3 75 81 A L - 0 0 12 -2,-0.2 -68,-0.1 -11,-0.1 -7,-0.1 -0.861 11.4-134.1-101.8 138.8 -7.9 2.8 1.3 76 82 A C - 0 0 74 -2,-0.4 -70,-1.1 -70,-0.2 2,-0.6 -0.798 17.2-124.4 -95.8 126.0 -9.1 3.5 -2.2 77 83 A P E +B 5 0A 89 0, 0.0 2,-0.2 0, 0.0 -72,-0.2 -0.578 41.4 177.1 -68.3 112.8 -8.2 1.1 -5.0 78 84 A V E B 4 0A 30 -74,-2.8 -74,-1.1 -2,-0.6 0, 0.0 -0.706 360.0 360.0-115.6 167.6 -6.5 3.1 -7.7 79 85 A G 0 0 104 -2,-0.2 -76,-0.0 -76,-0.1 -74,-0.0 -0.525 360.0 360.0 176.3 360.0 -4.9 2.4 -11.0