==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=31-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER TRANSCRIPTION 28-JUN-06 2HI3 . COMPND 2 MOLECULE: HOMEODOMAIN-ONLY PROTEIN; . SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; . AUTHOR J.P.MACKAY,H.KOOK,J.A.EPSTEIN,R.J.SIMPSON,W.W.YUNG . 73 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 5698.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 50 68.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 7 9.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 3 4.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 37 50.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 3 4.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A M 0 0 224 0, 0.0 3,-0.1 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 146.8 25.2 -7.6 3.6 2 2 A S + 0 0 100 1,-0.2 2,-1.6 3,-0.0 4,-0.2 0.875 360.0 164.0 58.7 41.5 22.8 -5.3 1.9 3 3 A A + 0 0 100 2,-0.1 2,-0.3 0, 0.0 -1,-0.2 -0.400 42.1 85.5 -89.2 59.6 20.7 -5.1 5.0 4 4 A Q S S- 0 0 133 -2,-1.6 2,-1.9 -3,-0.1 0, 0.0 -0.882 95.4 -80.1-147.9 176.5 18.7 -2.1 4.0 5 5 A T + 0 0 35 -2,-0.3 2,-0.4 2,-0.1 -2,-0.1 -0.473 58.5 174.3 -84.6 67.3 15.6 -1.0 2.0 6 6 A V - 0 0 97 -2,-1.9 2,-2.4 -4,-0.2 -2,-0.0 -0.644 66.4 -18.8 -81.3 128.3 17.3 -1.2 -1.4 7 7 A S S S+ 0 0 128 -2,-0.4 -1,-0.2 0, 0.0 -2,-0.1 -0.210 136.3 9.4 74.2 -47.8 15.0 -0.6 -4.4 8 8 A G S S- 0 0 25 -2,-2.4 38,-0.1 1,-0.0 2,-0.0 -0.904 95.9 -63.4-151.5 177.2 11.9 -1.3 -2.3 9 9 A P - 0 0 39 0, 0.0 2,-0.0 0, 0.0 33,-0.0 -0.283 51.1-116.0 -70.2 151.2 10.6 -1.9 1.2 10 10 A T >> - 0 0 54 1,-0.1 4,-1.5 4,-0.0 3,-0.8 -0.263 32.5 -96.6 -80.1 172.4 11.7 -4.9 3.3 11 11 A E H 3> S+ 0 0 144 1,-0.3 4,-1.4 2,-0.2 3,-0.3 0.892 124.0 57.8 -56.2 -43.3 9.5 -7.7 4.6 12 12 A D H 3> S+ 0 0 107 1,-0.2 4,-1.2 2,-0.2 -1,-0.3 0.834 105.4 51.5 -57.0 -34.2 9.1 -6.0 8.0 13 13 A Q H <> S+ 0 0 28 -3,-0.8 4,-2.7 1,-0.2 -1,-0.2 0.858 101.9 58.7 -73.4 -36.1 7.7 -2.9 6.2 14 14 A V H X S+ 0 0 36 -4,-1.5 4,-2.9 -3,-0.3 -1,-0.2 0.834 101.9 56.9 -61.3 -31.8 5.2 -5.0 4.2 15 15 A E H X S+ 0 0 130 -4,-1.4 4,-1.4 2,-0.2 -1,-0.2 0.921 112.4 38.9 -65.9 -44.7 3.8 -6.1 7.6 16 16 A I H X S+ 0 0 62 -4,-1.2 4,-2.1 2,-0.2 -2,-0.2 0.838 116.9 52.7 -73.5 -33.9 3.2 -2.5 8.7 17 17 A L H X S+ 0 0 1 -4,-2.7 4,-3.4 2,-0.2 -2,-0.2 0.906 106.5 51.0 -68.9 -44.4 2.0 -1.6 5.2 18 18 A E H X S+ 0 0 75 -4,-2.9 4,-1.9 2,-0.2 -1,-0.2 0.888 111.3 48.8 -61.7 -40.3 -0.5 -4.4 5.0 19 19 A Y H X S+ 0 0 149 -4,-1.4 4,-0.6 -5,-0.2 -1,-0.2 0.926 113.6 47.1 -62.6 -44.9 -2.0 -3.4 8.3 20 20 A N H >X S+ 0 0 18 -4,-2.1 4,-3.4 1,-0.2 3,-1.3 0.933 109.2 53.9 -61.9 -47.3 -2.1 0.2 7.1 21 21 A F H 3<>S+ 0 0 14 -4,-3.4 5,-1.0 1,-0.3 4,-0.5 0.885 112.6 43.7 -54.4 -42.4 -3.7 -0.8 3.8 22 22 A N H 3<5S+ 0 0 110 -4,-1.9 -1,-0.3 -5,-0.2 -2,-0.2 0.547 122.2 39.8 -82.3 -7.4 -6.5 -2.6 5.6 23 23 A K H <<5S+ 0 0 115 -3,-1.3 -2,-0.2 -4,-0.6 -3,-0.2 0.700 105.9 59.2-115.4 -28.1 -6.9 0.2 8.1 24 24 A V T <5S- 0 0 32 -4,-3.4 -3,-0.1 -5,-0.1 -2,-0.1 0.996 119.4 -76.8 -68.0 -75.7 -6.6 3.4 6.1 25 25 A N T 5 - 0 0 81 -4,-0.5 -3,-0.1 -5,-0.2 -4,-0.1 0.209 56.1-100.3-177.8 15.2 -9.4 3.3 3.4 26 26 A K S - 0 0 56 -2,-0.4 4,-1.7 1,-0.1 5,-0.1 -0.873 25.1-142.2-119.6 151.0 -4.4 9.2 0.2 30 30 A P H > S+ 0 0 92 0, 0.0 4,-1.5 0, 0.0 5,-0.2 0.979 100.9 34.6 -77.8 -59.9 -2.2 12.4 0.3 31 31 A T H > S+ 0 0 103 1,-0.2 4,-1.6 2,-0.2 5,-0.2 0.912 122.2 50.2 -60.0 -43.5 -2.5 13.4 4.0 32 32 A T H > S+ 0 0 34 1,-0.2 4,-3.1 2,-0.2 5,-0.4 0.919 104.6 56.8 -62.8 -46.3 -2.6 9.8 5.0 33 33 A L H X S+ 0 0 11 -4,-1.7 4,-2.5 1,-0.2 5,-0.2 0.926 108.6 44.4 -55.4 -54.1 0.5 8.7 3.0 34 34 A C H X S+ 0 0 65 -4,-1.5 4,-1.5 1,-0.2 -1,-0.2 0.907 118.3 43.9 -58.6 -44.9 2.9 11.2 4.6 35 35 A L H X S+ 0 0 124 -4,-1.6 4,-1.4 -5,-0.2 -2,-0.2 0.933 117.9 41.6 -69.7 -47.6 1.7 10.6 8.1 36 36 A I H X S+ 0 0 23 -4,-3.1 4,-2.1 1,-0.2 -1,-0.2 0.830 109.7 59.8 -72.6 -31.1 1.5 6.8 8.0 37 37 A A H X>S+ 0 0 2 -4,-2.5 5,-3.3 -5,-0.4 4,-1.6 0.919 104.5 49.5 -62.0 -44.4 4.7 6.5 6.1 38 38 A A H <5S+ 0 0 70 -4,-1.5 -1,-0.2 1,-0.2 -2,-0.2 0.895 113.9 45.4 -62.2 -40.4 6.6 8.2 8.9 39 39 A E H <5S+ 0 0 167 -4,-1.4 -1,-0.2 1,-0.2 -2,-0.2 0.794 112.5 51.3 -74.7 -28.6 5.1 5.9 11.5 40 40 A A H <5S- 0 0 6 -4,-2.1 -1,-0.2 -5,-0.1 -2,-0.2 0.733 119.1-111.8 -77.8 -22.6 5.7 2.9 9.3 41 41 A G T <5S+ 0 0 53 -4,-1.6 -3,-0.2 1,-0.3 2,-0.2 0.761 84.2 88.6 95.0 30.9 9.3 3.9 8.9 42 42 A L S - 0 0 65 -2,-0.2 4,-2.3 -3,-0.1 5,-0.2 -0.776 36.5 -98.6-123.0 173.8 8.5 7.8 3.0 44 44 A E H > S+ 0 0 100 -2,-0.3 4,-3.5 1,-0.2 5,-0.3 0.922 120.0 58.2 -56.7 -47.1 5.6 8.7 0.7 45 45 A E H > S+ 0 0 121 1,-0.2 4,-2.0 2,-0.2 -1,-0.2 0.894 111.1 40.5 -49.3 -49.3 7.4 7.4 -2.4 46 46 A Q H > S+ 0 0 43 2,-0.2 4,-1.5 1,-0.2 -1,-0.2 0.878 116.3 49.6 -72.3 -38.2 7.8 3.9 -0.9 47 47 A T H X S+ 0 0 0 -4,-2.3 4,-3.2 2,-0.2 5,-0.2 0.906 111.9 48.4 -67.9 -41.5 4.3 3.8 0.6 48 48 A Q H X S+ 0 0 90 -4,-3.5 4,-2.4 1,-0.2 5,-0.2 0.933 109.7 52.4 -62.5 -46.6 2.7 4.9 -2.7 49 49 A K H X S+ 0 0 98 -4,-2.0 4,-0.6 -5,-0.3 -1,-0.2 0.821 117.1 39.0 -60.4 -34.5 4.7 2.3 -4.7 50 50 A W H >X S+ 0 0 19 -4,-1.5 4,-1.4 2,-0.2 3,-0.7 0.929 113.6 51.5 -82.3 -49.4 3.4 -0.4 -2.4 51 51 A F H 3X S+ 0 0 2 -4,-3.2 4,-1.4 1,-0.3 3,-0.2 0.880 107.7 54.8 -56.3 -40.2 -0.2 0.7 -1.8 52 52 A K H 3X S+ 0 0 115 -4,-2.4 4,-1.0 -5,-0.2 -1,-0.3 0.819 103.5 54.5 -66.2 -32.0 -0.7 1.0 -5.6 53 53 A Q H S+ 0 0 67 -4,-2.0 5,-1.2 -5,-0.2 4,-0.9 0.847 112.7 48.4 -65.0 -34.7 -9.8 -4.9 -7.3 60 60 A R H <5S+ 0 0 190 -4,-1.5 -2,-0.2 3,-0.2 -1,-0.2 0.949 117.0 38.6 -70.4 -51.3 -9.3 -8.5 -8.5 61 61 A S H <5S+ 0 0 102 -4,-2.7 -2,-0.2 1,-0.2 -3,-0.2 0.954 124.3 36.1 -67.6 -52.1 -10.2 -10.3 -5.2 62 62 A E H <5S- 0 0 113 -4,-2.3 -1,-0.2 -5,-0.3 -3,-0.2 0.679 103.9-130.8 -81.0 -17.1 -13.1 -8.1 -4.0 63 63 A G T <5 + 0 0 55 -4,-0.9 -3,-0.2 -5,-0.4 -4,-0.1 0.996 34.7 178.3 66.9 78.0 -14.4 -7.5 -7.5 64 64 A L < - 0 0 60 -5,-1.2 2,-1.8 5,-0.0 -1,-0.2 -0.958 31.1-136.9-118.9 122.7 -14.9 -3.8 -7.9 65 65 A P - 0 0 53 0, 0.0 5,-0.4 0, 0.0 2,-0.2 -0.562 68.5 -69.7 -74.0 82.5 -16.2 -2.1 -11.1 66 66 A S S S- 0 0 80 -2,-1.8 3,-0.0 1,-0.1 0, 0.0 -0.462 86.8 -49.4 66.6-132.4 -13.7 0.8 -11.0 67 67 A E S S+ 0 0 116 -2,-0.2 -1,-0.1 2,-0.0 3,-0.0 0.863 117.0 47.8-101.2 -63.0 -14.4 3.3 -8.2 68 68 A C S S- 0 0 90 1,-0.1 2,-1.1 -4,-0.1 0, 0.0 -0.176 100.6 -83.0 -77.8 170.4 -18.1 4.3 -8.3 69 69 A R + 0 0 247 -5,-0.1 2,-0.4 2,-0.0 -1,-0.1 -0.669 68.1 150.2 -77.2 99.3 -21.1 2.0 -8.5 70 70 A S - 0 0 67 -2,-1.1 2,-0.8 -5,-0.4 0, 0.0 -0.997 45.4-128.7-136.1 131.1 -21.3 1.3 -12.2 71 71 A V - 0 0 147 -2,-0.4 2,-0.9 1,-0.0 -2,-0.0 -0.688 18.3-151.3 -82.5 108.0 -22.7 -1.8 -13.9 72 72 A T 0 0 123 -2,-0.8 -1,-0.0 1,-0.2 -2,-0.0 -0.717 360.0 360.0 -79.6 105.8 -20.2 -3.0 -16.5 73 73 A D 0 0 225 -2,-0.9 -1,-0.2 0, 0.0 -2,-0.0 0.831 360.0 360.0-103.2 360.0 -22.3 -4.8 -19.1