==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=10-MAY-2013 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER DNA/ANTIBIOTIC 12-OCT-12 4HIV . COMPND 2 MOLECULE: DNA (5'-D(*AP*TP*GP*CP*GP*GP*CP*AP*T)-3'); . SOURCE 2 SYNTHETIC: YES; . AUTHOR Y.S.LO,W.H.TSENG,M.H.HOU . 20 4 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 1818.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 4 20.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 2 10.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 1 5.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 1 5.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 C T 0 0 109 0, 0.0 4,-0.3 0, 0.0 9,-0.1 0.000 360.0 360.0 360.0-143.9 -14.1 50.3 2.9 2 2 C X - 0 0 62 2,-1.2 3,-0.2 3,-0.3 8,-0.1 0.857 360.0 -89.7 -46.2-132.4 -15.5 51.7 -0.4 3 3 C P S S+ 0 0 119 0, 0.0 -1,-0.1 0, 0.0 2,-0.0 0.337 135.3 77.1-112.9 -5.3 -18.4 49.8 -1.7 4 4 C X 0 0 56 4,-0.0 -2,-1.2 0, 0.0 0, 0.0 -0.994 360.0 360.0 129.0 -8.6 -15.6 49.1 -2.5 5 5 C X 0 0 159 -4,-0.3 -3,-0.3 -3,-0.2 0, 0.0 0.951 360.0 360.0 51.0 360.0 -13.1 47.2 -0.5 6 ! 0 0 0 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 360.0 0.0 0.0 0.0 7 7 C T > 0 0 112 0, 0.0 3,-0.6 0, 0.0 -5,-0.1 0.000 360.0 360.0 360.0 172.5 -19.8 52.7 3.1 8 8 C X T 3 - 0 0 64 3,-0.4 3,-0.3 1,-0.2 8,-0.0 0.217 360.0 -38.6 4.8-134.0 -16.9 55.1 3.0 9 9 C P T 3 S- 0 0 74 0, 0.0 -1,-0.2 0, 0.0 2,-0.1 -0.590 137.2 -31.3-140.4 65.6 -14.8 55.1 6.1 10 10 C X < 0 0 19 -3,-0.6 4,-0.0 6,-0.2 0, 0.0 0.318 360.0 360.0-123.7-106.8 -17.4 54.8 7.0 11 11 C X 0 0 148 -3,-0.3 -3,-0.4 -2,-0.1 0, 0.0 0.979 360.0 360.0 46.6 360.0 -21.0 55.6 6.4 12 !* 0 0 0 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 360.0 0.0 0.0 0.0 13 1 D T 0 0 82 0, 0.0 4,-0.2 0, 0.0 3,-0.2 0.000 360.0 360.0 360.0-174.5 -13.5 56.2 15.9 14 2 D X B -A 20 0A 84 6,-0.9 6,-1.1 3,-0.5 3,-0.1 -0.354 360.0 -71.9 43.9-117.5 -15.6 58.8 14.1 15 3 D P S S+ 0 0 69 0, 0.0 -1,-0.4 0, 0.0 -5,-0.1 0.037 132.8 35.1 -47.2 122.3 -17.6 57.4 12.4 16 4 D X 0 0 27 -3,-0.2 -6,-0.2 -2,-0.1 -2,-0.1 0.471 360.0 360.0-124.1-162.1 -15.3 56.9 10.9 17 5 D X 0 0 139 -4,-0.2 -3,-0.5 -3,-0.1 -7,-0.0 0.861 360.0 360.0 54.1 360.0 -11.6 56.3 11.5 18 ! 0 0 0 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 360.0 0.0 0.0 0.0 19 7 D T 0 0 75 0, 0.0 4,-0.2 0, 0.0 -5,-0.2 0.000 360.0 360.0 360.0-175.0 -17.7 56.0 17.4 20 8 D X B -A 14 0A 86 -6,-1.1 -6,-0.9 3,-0.5 3,-0.1 -0.433 360.0 -73.6 46.2-108.9 -16.0 58.6 19.5 21 9 D P S S+ 0 0 109 0, 0.0 -1,-0.4 0, 0.0 2,-0.1 0.219 131.8 37.1 -58.7 128.3 -14.0 57.1 21.1 22 10 D X 0 0 54 -3,-0.2 -2,-0.0 -8,-0.0 -8,-0.0 0.266 360.0 360.0-119.2-157.0 -16.3 56.3 22.5 23 11 D X 0 0 171 -4,-0.2 -3,-0.5 -2,-0.1 0, 0.0 0.812 360.0 360.0 49.7 360.0 -19.9 55.5 21.6