==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=3-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER PRION PROTEIN 27-FEB-03 1HJM . COMPND 2 MOLECULE: MAJOR PRION PROTEIN PRECURSOR; . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR L.CALZOLAI,R.ZAHN . 104 1 1 1 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 7352.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 70 67.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 3 2.9 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 1 1.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 12 11.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 51 49.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 1 1.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 125 A L 0 0 110 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0-119.6 3.9 -14.2 -0.7 2 126 A G - 0 0 70 2,-0.2 0, 0.0 0, 0.0 0, 0.0 0.656 360.0 -20.2 117.5 59.2 7.6 -15.1 -0.4 3 127 A G S S+ 0 0 53 1,-0.4 2,-0.4 37,-0.0 36,-0.1 0.385 81.7 140.3 103.1 1.1 9.7 -12.4 1.3 4 128 A Y - 0 0 39 36,-0.1 -1,-0.4 34,-0.1 2,-0.3 -0.649 40.6-151.5 -68.4 126.4 7.6 -9.2 1.0 5 129 A M E -A 39 0A 113 34,-2.3 34,-2.5 -2,-0.4 2,-0.3 -0.695 15.9-107.3 -97.0 155.5 8.0 -7.4 4.3 6 130 A L E -A 38 0A 82 -2,-0.3 32,-0.2 32,-0.2 2,-0.0 -0.670 33.8-142.6 -79.7 135.4 5.6 -5.1 6.0 7 131 A G - 0 0 8 30,-2.6 -1,-0.1 -2,-0.3 83,-0.1 -0.098 32.1 -77.2 -79.1-173.0 6.6 -1.4 6.0 8 132 A S - 0 0 79 81,-0.1 29,-0.5 28,-0.1 2,-0.3 0.213 51.6-105.4 -71.0-163.1 6.0 1.2 8.9 9 133 A A + 0 0 53 27,-0.1 27,-0.2 1,-0.0 3,-0.1 -0.969 36.0 165.3-134.9 151.9 2.6 2.8 9.6 10 134 A M - 0 0 68 25,-1.7 26,-0.1 1,-0.6 -1,-0.0 -0.016 55.0-103.3-155.9 37.9 1.1 6.3 9.0 11 135 A S - 0 0 76 24,-0.2 -1,-0.6 1,-0.1 0, 0.0 -0.200 68.1 -46.6 49.1-160.7 -2.6 6.0 9.5 12 136 A R - 0 0 62 -3,-0.1 23,-0.1 77,-0.0 -1,-0.1 -0.865 66.6-134.7-101.8 93.4 -4.8 6.0 6.3 13 137 A P - 0 0 31 0, 0.0 2,-0.3 0, 0.0 76,-0.1 -0.173 21.7-113.6 -57.2 141.1 -3.5 8.8 4.1 14 138 A I - 0 0 87 71,-0.0 2,-0.3 1,-0.0 9,-0.0 -0.615 33.9-165.3 -84.0 135.3 -6.2 11.0 2.6 15 139 A I - 0 0 10 -2,-0.3 2,-0.3 8,-0.2 12,-0.1 -0.825 11.7-136.4-120.7 148.8 -6.6 10.8 -1.2 16 140 A H + 0 0 120 -2,-0.3 6,-0.0 1,-0.1 7,-0.0 -0.817 17.6 178.4-108.2 150.1 -8.5 13.1 -3.6 17 141 A F - 0 0 49 -2,-0.3 5,-0.1 2,-0.2 -1,-0.1 0.108 50.7-112.0-136.1 7.2 -10.6 11.8 -6.5 18 142 A G S S+ 0 0 81 1,-0.1 2,-0.4 3,-0.1 3,-0.0 0.367 91.2 88.1 74.6 -4.5 -11.8 15.1 -7.9 19 143 A S S > S- 0 0 64 1,-0.1 4,-2.6 0, 0.0 5,-0.2 -0.993 74.7-136.7-137.5 132.3 -15.4 14.3 -6.9 20 144 A D H > S+ 0 0 139 -2,-0.4 4,-2.1 2,-0.2 5,-0.3 0.797 107.3 53.1 -61.6 -31.2 -17.3 15.0 -3.6 21 145 A Y H > S+ 0 0 144 2,-0.2 4,-3.7 3,-0.2 5,-0.2 1.000 115.2 36.7 -58.0 -72.4 -18.8 11.5 -3.7 22 146 A E H > S+ 0 0 63 1,-0.2 4,-2.3 2,-0.2 -2,-0.2 0.784 119.9 51.4 -54.9 -32.4 -15.4 9.6 -4.2 23 147 A D H X S+ 0 0 55 -4,-2.6 4,-1.4 2,-0.2 -1,-0.2 0.962 119.4 32.4 -74.6 -55.5 -13.7 12.0 -1.8 24 148 A R H X S+ 0 0 143 -4,-2.1 4,-2.9 -5,-0.2 5,-0.2 0.910 115.9 60.3 -66.4 -43.1 -16.1 11.8 1.1 25 149 A Y H X S+ 0 0 82 -4,-3.7 4,-1.3 -5,-0.3 -2,-0.2 0.934 104.3 48.9 -54.8 -50.0 -16.9 8.1 0.2 26 150 A Y H >< S+ 0 0 1 -4,-2.3 3,-0.7 -5,-0.2 -1,-0.3 0.915 113.9 47.8 -49.8 -49.8 -13.2 7.2 0.8 27 151 A R H >X S+ 0 0 115 -4,-1.4 3,-1.9 1,-0.3 4,-0.6 0.934 103.5 59.4 -57.7 -55.4 -13.4 9.1 4.1 28 152 A E H 3< S+ 0 0 113 -4,-2.9 -1,-0.3 1,-0.3 -2,-0.2 0.738 121.1 28.0 -40.9 -35.8 -16.6 7.5 5.2 29 153 A N T X< S+ 0 0 18 -4,-1.3 3,-1.8 -3,-0.7 4,-0.4 0.192 85.6 104.6-121.2 19.5 -14.7 4.1 4.9 30 154 A M G X4 + 0 0 21 -3,-1.9 3,-1.1 1,-0.3 -2,-0.1 0.819 68.8 77.2 -69.7 -21.7 -11.1 5.1 5.6 31 155 A H G 3< S+ 0 0 146 -4,-0.6 -1,-0.3 1,-0.2 -2,-0.1 0.528 102.6 36.8 -65.6 0.6 -11.7 3.5 9.1 32 156 A R G < S+ 0 0 144 -3,-1.8 -1,-0.2 2,-0.1 -2,-0.2 0.427 96.7 101.1-123.1 -4.3 -11.2 0.1 7.3 33 157 A Y S < S- 0 0 1 -3,-1.1 -3,-0.0 -4,-0.4 2,-0.0 -0.294 82.1 -76.1 -85.7 167.5 -8.5 0.9 4.7 34 158 A P - 0 0 5 0, 0.0 -1,-0.1 0, 0.0 3,-0.1 -0.307 33.1-177.9 -66.4 145.9 -4.7 -0.0 5.0 35 159 A N S S+ 0 0 55 -23,-0.1 -25,-1.7 1,-0.0 2,-0.3 0.419 73.3 36.8-118.3 -4.0 -2.3 1.9 7.2 36 160 A Q S S- 0 0 63 -27,-0.2 2,-0.2 -26,-0.1 -27,-0.1 -0.867 75.0-136.0-135.3 171.9 0.9 -0.0 6.3 37 161 A V - 0 0 3 -29,-0.5 -30,-2.6 -2,-0.3 2,-0.5 -0.743 12.5-123.0-124.0 170.0 2.3 -1.6 3.1 38 162 A Y E +A 6 0A 68 17,-0.4 21,-0.7 -32,-0.2 20,-0.3 -0.985 49.4 141.8-114.2 114.5 4.0 -4.8 1.8 39 163 A Y E -A 5 0A 17 -34,-2.5 -34,-2.3 -2,-0.5 13,-0.1 -0.554 46.0-105.9-131.1-170.4 7.3 -4.0 0.0 40 164 A R - 0 0 56 11,-0.3 -36,-0.1 -36,-0.2 4,-0.1 -0.997 29.8-120.9-127.5 143.9 10.8 -5.6 -0.2 41 165 A P > - 0 0 55 0, 0.0 4,-0.8 0, 0.0 3,-0.2 -0.099 34.6 -93.0 -69.3 170.5 14.0 -4.4 1.5 42 166 A M T 4 S+ 0 0 53 2,-0.2 4,-0.1 1,-0.2 0, 0.0 -0.028 97.4 64.6 -77.3-176.7 17.2 -3.4 -0.2 43 167 A D T 4 S+ 0 0 175 2,-0.2 -1,-0.2 1,-0.1 3,-0.1 0.655 121.0 35.3 59.2 23.9 20.3 -5.6 -1.1 44 168 A E T 4 S+ 0 0 158 1,-0.5 2,-0.3 -3,-0.2 -2,-0.2 0.267 124.1 24.1-159.7 -33.7 17.9 -7.5 -3.4 45 169 A Y < + 0 0 48 -4,-0.8 -1,-0.5 2,-0.0 2,-0.3 -0.982 62.5 148.9-144.0 147.4 15.4 -4.9 -4.8 46 170 A S + 0 0 82 -2,-0.3 2,-0.2 -4,-0.1 4,-0.0 -0.929 5.0 127.8-171.0 155.6 15.4 -1.1 -5.5 47 171 A N - 0 0 77 -2,-0.3 -2,-0.0 1,-0.2 0, 0.0 -0.831 56.1 -98.0 174.0 178.7 14.1 1.7 -7.8 48 172 A Q S S- 0 0 116 -2,-0.2 -1,-0.2 3,-0.0 46,-0.1 0.979 107.6 -12.5 -70.6 -79.7 12.3 5.1 -7.5 49 173 A N S >> S+ 0 0 75 2,-0.1 3,-2.2 1,-0.1 4,-1.4 0.710 129.4 68.4-100.3 -26.2 8.6 4.3 -8.2 50 174 A N H 3> S+ 0 0 86 1,-0.3 4,-1.1 2,-0.2 5,-0.3 0.885 91.4 65.5 -64.3 -29.9 9.0 0.7 -9.6 51 175 A F H 34 S+ 0 0 0 1,-0.2 -11,-0.3 2,-0.2 -1,-0.3 0.494 107.5 42.4 -64.8 -5.3 10.0 -0.2 -6.0 52 176 A V H <> S+ 0 0 2 -3,-2.2 4,-3.1 3,-0.1 5,-0.3 0.635 100.3 70.7-108.3 -26.9 6.4 0.7 -5.2 53 177 A H H X S+ 0 0 137 -4,-1.4 4,-2.2 1,-0.2 -2,-0.2 0.935 107.5 34.7 -57.8 -57.1 4.7 -0.9 -8.2 54 178 A D H X S+ 0 0 65 -4,-1.1 4,-0.9 2,-0.2 -1,-0.2 0.896 118.1 56.0 -61.1 -44.6 5.3 -4.6 -7.0 55 179 A a H >> S+ 0 0 1 -5,-0.3 4,-2.8 2,-0.2 3,-1.1 0.950 110.8 41.6 -55.7 -56.2 4.8 -3.5 -3.3 56 180 A V H 3X S+ 0 0 3 -4,-3.1 4,-2.7 1,-0.3 5,-0.3 0.961 111.2 55.9 -60.9 -49.1 1.4 -2.0 -3.9 57 181 A N H 3X S+ 0 0 94 -4,-2.2 4,-0.7 -5,-0.3 -1,-0.3 0.646 114.8 42.7 -58.0 -17.3 0.3 -4.9 -6.1 58 182 A I H X S+ 0 0 6 -4,-2.7 3,-1.3 -5,-0.3 4,-1.1 0.989 109.9 46.9 -59.9 -61.5 -3.4 -4.8 -2.1 61 185 A K H >X S+ 0 0 118 -4,-0.7 4,-2.5 -5,-0.3 3,-0.8 0.853 108.1 60.8 -48.4 -39.1 -3.8 -8.5 -3.1 62 186 A Q H 3X S+ 0 0 56 -4,-2.7 4,-1.9 1,-0.3 -1,-0.3 0.868 103.3 47.8 -61.9 -37.9 -3.1 -9.3 0.6 63 187 A H H S+ 0 0 14 -4,-0.8 4,-1.4 -3,-0.5 5,-1.1 0.946 107.2 56.9 -61.7 -42.5 -11.3 -11.0 3.0 68 192 A T H <5S+ 0 0 84 -4,-2.0 -1,-0.2 1,-0.3 -2,-0.2 0.854 107.3 46.7 -60.0 -36.0 -11.9 -14.2 1.0 69 193 A T H <5S+ 0 0 118 -4,-2.0 -1,-0.3 -3,-0.3 -2,-0.2 0.798 114.3 49.2 -77.5 -24.9 -10.8 -16.4 4.0 70 194 A K H <5S- 0 0 170 -4,-1.6 -2,-0.2 -3,-0.5 -1,-0.2 0.674 128.0-101.4 -77.0 -17.5 -13.1 -14.2 6.2 71 195 A G T <5S+ 0 0 65 -4,-1.4 2,-0.3 1,-0.4 -3,-0.2 0.869 89.8 97.4 88.6 54.4 -16.0 -14.7 3.7 72 196 A E < - 0 0 106 -5,-1.1 -1,-0.4 -8,-0.2 2,-0.2 -0.895 50.4-159.3-154.3 174.9 -15.7 -11.2 2.0 73 197 A N - 0 0 124 -2,-0.3 -9,-0.1 -6,-0.1 -8,-0.1 -0.753 12.3-140.6-165.5 124.0 -14.1 -9.8 -1.2 74 198 A F - 0 0 34 -2,-0.2 2,-0.2 -11,-0.1 -2,-0.0 -0.313 26.9-131.0 -67.8 168.3 -13.1 -6.3 -2.2 75 199 A T > - 0 0 74 -2,-0.1 4,-1.4 1,-0.0 5,-0.1 -0.535 31.5 -92.5-108.7 178.7 -13.7 -5.2 -5.9 76 200 A E H > S+ 0 0 156 2,-0.2 4,-3.1 -2,-0.2 5,-0.2 0.828 127.4 59.6 -62.5 -27.1 -11.5 -3.6 -8.5 77 201 A T H > S+ 0 0 77 2,-0.2 4,-2.1 1,-0.2 5,-0.2 0.981 106.5 41.1 -64.6 -58.1 -13.1 -0.3 -7.1 78 202 A D H > S+ 0 0 22 1,-0.2 4,-1.7 2,-0.2 -1,-0.2 0.765 118.3 51.2 -62.8 -21.5 -11.9 -0.8 -3.5 79 203 A V H X S+ 0 0 26 -4,-1.4 4,-2.6 2,-0.2 -2,-0.2 0.942 106.4 51.5 -78.5 -49.9 -8.6 -1.9 -5.0 80 204 A K H X S+ 0 0 140 -4,-3.1 4,-1.0 2,-0.2 -2,-0.2 0.813 111.4 49.2 -57.8 -34.8 -8.2 1.1 -7.3 81 205 A M H >X S+ 0 0 5 -4,-2.1 4,-1.3 2,-0.2 3,-0.6 0.944 111.6 48.3 -68.2 -47.7 -8.8 3.3 -4.2 82 206 A M H 3X S+ 0 0 0 -4,-1.7 4,-2.4 1,-0.2 5,-0.5 0.849 100.8 67.0 -56.5 -37.3 -6.1 1.3 -2.3 83 207 A E H 3X S+ 0 0 69 -4,-2.6 4,-1.5 1,-0.2 -1,-0.2 0.902 102.3 46.3 -57.6 -40.4 -3.7 1.7 -5.3 84 208 A R H X S+ 0 0 65 -4,-1.5 4,-2.5 -5,-0.5 3,-0.9 0.992 110.7 41.8 -59.7 -65.4 1.4 3.7 -3.4 88 212 A Q H 3X S+ 0 0 86 -4,-1.8 4,-3.2 1,-0.3 5,-0.2 0.878 114.1 53.6 -54.7 -40.2 2.0 7.0 -1.5 89 213 A M H 3X S+ 0 0 2 -4,-3.0 4,-1.6 2,-0.2 -1,-0.3 0.847 109.9 47.6 -60.3 -36.5 2.5 5.0 1.7 90 214 A a H X S+ 0 0 69 -4,-2.1 3,-2.3 -3,-0.2 4,-1.3 0.908 108.8 57.4 -77.9 -43.0 14.5 4.7 4.4 98 222 A S H 3X S+ 0 0 17 -4,-3.3 4,-3.3 1,-0.3 5,-0.4 0.813 92.2 70.7 -58.4 -31.6 16.3 6.5 1.6 99 223 A Q H 3< S+ 0 0 99 -4,-2.0 -1,-0.3 1,-0.2 4,-0.2 0.643 101.7 45.5 -66.8 -12.8 17.3 9.2 4.1 100 224 A A H <> S+ 0 0 66 -3,-2.3 4,-1.6 2,-0.1 -2,-0.2 0.883 115.8 44.5 -81.5 -54.1 19.6 6.6 5.6 101 225 A Y H >< S+ 0 0 172 -4,-1.3 3,-0.8 1,-0.2 -2,-0.2 0.950 116.9 45.2 -55.1 -54.9 21.0 5.4 2.3 102 226 A Y T 3< S+ 0 0 201 -4,-3.3 -1,-0.2 1,-0.2 -3,-0.2 0.811 110.0 57.2 -55.5 -35.3 21.5 9.1 1.0 103 227 A Q T 34 0 0 163 -5,-0.4 -1,-0.2 1,-0.2 -2,-0.2 0.775 360.0 360.0 -77.1 -22.3 23.0 10.0 4.4 104 228 A R << 0 0 237 -4,-1.6 -1,-0.2 -3,-0.8 -2,-0.2 0.887 360.0 360.0 -50.8 360.0 25.8 7.3 4.0