==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=3-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER PRION PROTEIN 27-FEB-03 1HJN . COMPND 2 MOLECULE: MAJOR PRION PROTEIN PRECURSOR; . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR L.CALZOLAI,R.ZAHN . 104 1 1 1 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 7118.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 65 62.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 5 4.8 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 6 5.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 51 49.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 3 2.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 125 A L 0 0 135 0, 0.0 57,-0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 102.9 2.0 15.4 1.7 2 126 A G - 0 0 87 1,-0.1 0, 0.0 0, 0.0 0, 0.0 0.389 360.0 -50.8 -84.6 2.4 5.5 16.3 2.8 3 127 A G S S+ 0 0 53 1,-0.1 2,-0.3 2,-0.0 -1,-0.1 0.668 82.4 146.2 121.3 61.7 7.4 14.8 -0.2 4 128 A Y - 0 0 51 36,-0.1 2,-0.2 54,-0.0 36,-0.2 -0.777 21.4-170.4-105.3 163.2 6.5 11.2 -1.0 5 129 A M E -A 39 0A 119 34,-2.8 34,-2.2 -2,-0.3 -2,-0.0 -0.725 30.0 -80.2-140.6-177.4 6.3 9.5 -4.5 6 130 A L E -A 38 0A 64 32,-0.3 32,-0.3 -2,-0.2 33,-0.2 -0.139 35.0-142.9 -78.4 179.4 5.0 6.2 -5.9 7 131 A G E - 0 0 11 30,-1.7 -1,-0.1 1,-0.3 83,-0.1 -0.717 36.8 -61.7-128.2-173.0 6.7 2.7 -5.9 8 132 A S E - 0 0 77 -2,-0.2 29,-0.6 28,-0.1 2,-0.3 0.093 48.7-117.4 -66.8 177.7 6.8 -0.2 -8.4 9 133 A A E +A 36 0A 53 27,-0.2 2,-0.2 84,-0.0 27,-0.2 -0.855 38.0 142.8-120.6 156.7 3.9 -2.3 -9.7 10 134 A M - 0 0 54 25,-1.2 2,-0.1 -2,-0.3 79,-0.0 -0.846 52.8 -46.8-163.4-167.9 3.0 -6.1 -9.5 11 135 A S - 0 0 101 -2,-0.2 -1,-0.1 1,-0.1 0, 0.0 -0.330 68.4 -93.5 -64.3 163.4 0.1 -8.6 -9.2 12 136 A R - 0 0 91 -2,-0.1 2,-0.1 21,-0.0 -1,-0.1 -0.764 42.8-136.4 -86.5 109.6 -2.6 -7.8 -6.5 13 137 A P - 0 0 24 0, 0.0 2,-0.3 0, 0.0 76,-0.1 -0.431 16.6-134.7 -70.3 145.0 -1.5 -9.8 -3.3 14 138 A I + 0 0 85 -2,-0.1 2,-0.3 74,-0.1 13,-0.0 -0.797 23.4 178.0-108.9 140.3 -4.3 -11.7 -1.5 15 139 A I - 0 0 22 -2,-0.3 70,-0.1 8,-0.1 11,-0.1 -0.966 15.7-147.2-145.3 118.5 -4.9 -11.7 2.2 16 140 A H - 0 0 134 -2,-0.3 7,-0.1 1,-0.1 8,-0.0 -0.286 9.0-165.6 -74.4 170.5 -7.8 -13.5 4.1 17 141 A F - 0 0 57 2,-0.2 -1,-0.1 -2,-0.1 3,-0.1 0.332 44.9-112.5-136.1 -6.7 -9.5 -12.3 7.3 18 142 A G S S+ 0 0 66 1,-0.2 2,-0.4 2,-0.1 3,-0.1 0.342 87.2 94.8 88.9 -2.5 -11.4 -15.5 8.2 19 143 A S S >> S- 0 0 49 1,-0.1 4,-3.0 0, 0.0 3,-2.0 -0.963 74.3-131.7-124.2 141.6 -14.9 -14.0 7.6 20 144 A D H 3>>S+ 0 0 138 -2,-0.4 4,-2.8 1,-0.3 5,-1.0 0.935 108.0 56.1 -53.4 -52.5 -17.0 -14.3 4.4 21 145 A Y H 345S+ 0 0 151 1,-0.2 -1,-0.3 3,-0.2 0, 0.0 0.475 120.3 30.9 -65.5 -0.7 -17.8 -10.6 4.4 22 146 A E H <>5S+ 0 0 41 -3,-2.0 4,-1.5 3,-0.1 -1,-0.2 0.617 121.3 47.6-120.3 -32.6 -14.1 -9.8 4.4 23 147 A D H X5S+ 0 0 46 -4,-3.0 4,-0.7 2,-0.2 -3,-0.2 0.877 126.9 29.2 -77.0 -46.4 -12.6 -12.8 2.5 24 148 A R H X5S+ 0 0 143 -4,-2.8 4,-2.4 -5,-0.3 5,-0.2 0.855 117.2 59.2 -78.3 -45.4 -15.2 -12.5 -0.3 25 149 A Y H >< S+ 0 0 8 -4,-1.7 3,-2.0 -3,-0.2 4,-0.4 0.308 82.9 100.3-119.3 13.4 -13.7 -5.4 -5.1 30 154 A M G >< S+ 0 0 19 -4,-1.1 3,-1.2 -3,-0.4 -1,-0.2 0.819 74.7 74.6 -67.7 -24.2 -9.9 -6.1 -5.5 31 155 A H G 3 S+ 0 0 140 -4,-0.4 -1,-0.3 -3,-0.3 -2,-0.1 0.538 101.5 41.2 -62.6 -10.0 -10.5 -5.1 -9.1 32 156 A R G < S+ 0 0 98 -3,-2.0 -1,-0.3 2,-0.0 -2,-0.2 0.398 97.0 97.2-114.9 -3.2 -10.8 -1.4 -7.8 33 157 A Y S < S- 0 0 10 -3,-1.2 -21,-0.0 -4,-0.4 -3,-0.0 -0.257 82.7 -85.3 -76.8 169.7 -7.9 -1.6 -5.3 34 158 A P - 0 0 14 0, 0.0 -1,-0.2 0, 0.0 3,-0.1 -0.062 22.9-165.3 -64.9 173.1 -4.3 -0.3 -6.1 35 159 A N S S+ 0 0 66 1,-0.1 -25,-1.2 -23,-0.1 2,-0.3 0.261 76.3 46.9-137.5 -7.8 -1.5 -2.2 -7.8 36 160 A Q E S-A 9 0A 59 -27,-0.2 2,-0.2 23,-0.0 -27,-0.2 -0.784 73.7-138.3-126.8 176.0 1.4 0.2 -6.8 37 161 A V E - 0 0 0 -29,-0.6 -30,-1.7 -2,-0.3 2,-0.4 -0.629 11.5-119.0-124.4-180.0 2.4 1.9 -3.5 38 162 A Y E +A 6 0A 67 17,-0.4 21,-0.5 -32,-0.3 -32,-0.3 -0.999 50.8 118.5-124.3 131.1 3.6 5.3 -2.2 39 163 A Y E -A 5 0A 37 -34,-2.2 -34,-2.8 -2,-0.4 13,-0.1 -0.840 56.4-103.7-159.3-168.6 7.0 5.7 -0.4 40 164 A R - 0 0 30 -2,-0.2 3,-0.2 -36,-0.2 4,-0.1 -0.982 43.4-104.3-123.8 144.8 10.4 7.5 -0.8 41 165 A P - 0 0 81 0, 0.0 4,-0.0 0, 0.0 3,-0.0 -0.410 67.3 -61.1 -67.6 153.3 13.5 5.7 -2.0 42 166 A M S S+ 0 0 59 1,-0.2 4,-0.1 2,-0.1 9,-0.0 0.045 89.4 124.7 -48.5 102.5 15.9 4.9 0.9 43 167 A D S S- 0 0 111 -3,-0.2 -1,-0.2 2,-0.1 3,-0.1 0.472 88.2 -0.1-127.7 -15.6 16.9 8.3 2.2 44 168 A E S S+ 0 0 142 1,-0.3 2,-0.3 -4,-0.1 -2,-0.1 0.400 119.3 55.9-162.7 -12.6 16.1 8.1 5.9 45 169 A Y + 0 0 30 1,-0.1 -1,-0.3 2,-0.0 -2,-0.1 -0.951 35.5 165.7-144.3 152.8 14.6 4.7 6.8 46 170 A S + 0 0 69 -2,-0.3 2,-0.1 -4,-0.1 -1,-0.1 0.172 37.5 119.4-162.5 11.2 15.7 1.0 6.4 47 171 A N - 0 0 90 1,-0.1 -2,-0.0 2,-0.0 0, 0.0 -0.391 57.9-137.1 -66.0 168.6 13.5 -1.3 8.5 48 172 A Q S > S+ 0 0 122 3,-0.1 4,-0.6 -2,-0.1 -1,-0.1 0.884 98.6 30.0 -89.1 -56.3 11.5 -4.0 6.6 49 173 A N H >> S+ 0 0 83 2,-0.2 4,-1.4 1,-0.1 3,-0.7 0.934 123.7 44.7 -68.6 -53.0 8.2 -3.6 8.4 50 174 A N H 3> S+ 0 0 86 1,-0.3 4,-1.7 2,-0.2 5,-0.2 0.861 105.2 61.5 -76.3 -30.4 8.3 0.1 9.4 51 175 A F H 3> S+ 0 0 5 1,-0.2 4,-1.1 2,-0.2 -1,-0.3 0.817 110.7 43.7 -51.2 -36.0 9.5 1.2 5.9 52 176 A V H X S+ 0 0 7 -4,-3.0 4,-1.5 -5,-0.3 3,-1.0 0.982 112.0 45.8 -53.7 -64.3 -3.9 4.1 1.4 61 185 A K H 3X S+ 0 0 125 -4,-2.2 4,-2.7 -5,-0.3 3,-0.3 0.876 107.3 61.2 -53.3 -38.1 -4.7 7.7 2.5 62 186 A Q H 3X S+ 0 0 40 -4,-3.1 4,-2.9 1,-0.3 -1,-0.3 0.851 101.4 51.3 -60.5 -37.8 -4.1 8.8 -1.1 63 187 A H H X>S+ 0 0 11 -4,-2.4 4,-2.9 1,-0.2 5,-1.5 0.967 114.3 47.7 -61.2 -47.0 -12.2 9.6 -3.7 68 192 A T H 3<5S+ 0 0 67 -4,-2.7 -2,-0.2 1,-0.3 -1,-0.2 0.841 105.2 57.4 -64.5 -34.1 -12.9 12.8 -1.7 69 193 A T H 3<5S+ 0 0 116 -4,-2.8 -1,-0.3 -5,-0.2 -2,-0.2 0.658 115.1 40.0 -72.2 -13.8 -11.4 15.1 -4.4 70 194 A K H <<5S- 0 0 170 -3,-1.4 -2,-0.2 -4,-0.7 -1,-0.2 0.838 131.7 -91.9 -94.1 -48.1 -14.0 13.4 -6.8 71 195 A G T <5S+ 0 0 64 -4,-2.9 2,-0.3 1,-0.3 -3,-0.3 0.517 88.7 97.2 136.8 43.2 -16.9 13.4 -4.1 72 196 A E < - 0 0 132 -5,-1.5 2,-0.3 -8,-0.2 -1,-0.3 -0.945 49.3-151.4-142.0 163.7 -16.7 10.0 -2.3 73 197 A N - 0 0 116 -2,-0.3 -9,-0.1 -6,-0.1 -8,-0.1 -0.955 11.4-142.2-145.0 125.0 -15.2 8.6 1.0 74 198 A F - 0 0 16 -2,-0.3 2,-0.3 1,-0.1 3,-0.0 0.092 22.3-124.2 -65.0-177.1 -14.0 5.0 1.8 75 199 A T > - 0 0 75 1,-0.1 4,-1.1 0, 0.0 5,-0.1 -0.824 28.4 -95.8-128.6 170.0 -14.5 3.3 5.2 76 200 A E H > S+ 0 0 136 -2,-0.3 4,-3.1 1,-0.2 3,-0.4 0.861 124.9 57.2 -53.1 -38.2 -12.5 1.6 7.9 77 201 A T H > S+ 0 0 54 1,-0.2 4,-2.1 2,-0.2 -1,-0.2 0.967 108.2 42.4 -57.0 -58.8 -13.4 -1.7 6.0 78 202 A D H 4 S+ 0 0 10 1,-0.2 4,-0.5 2,-0.2 -1,-0.2 0.589 118.4 49.3 -66.5 -13.5 -11.9 -0.6 2.7 79 203 A V H X S+ 0 0 28 -4,-1.1 4,-2.2 -3,-0.4 3,-0.4 0.898 108.4 48.5 -94.9 -51.3 -8.9 0.9 4.6 80 204 A K H X S+ 0 0 131 -4,-3.1 4,-1.1 1,-0.3 -2,-0.2 0.880 111.2 54.1 -52.2 -43.2 -8.0 -2.1 6.8 81 205 A M H X S+ 0 0 3 -4,-2.1 4,-1.6 -5,-0.3 -1,-0.3 0.868 108.4 47.6 -64.7 -37.4 -8.2 -4.3 3.7 82 206 A M H >>S+ 0 0 2 -4,-0.5 4,-2.8 -3,-0.4 5,-0.6 0.855 99.4 67.9 -70.0 -32.6 -5.7 -2.0 1.9 83 207 A E H X5S+ 0 0 71 -4,-2.2 4,-0.6 1,-0.2 -2,-0.2 0.843 108.3 41.0 -55.4 -34.7 -3.4 -2.1 5.0 84 208 A R H X5S+ 0 0 115 -4,-1.1 4,-2.4 -3,-0.2 -1,-0.2 0.941 120.4 39.7 -68.4 -58.6 -2.9 -5.8 4.1 85 209 A V H X5S+ 0 0 1 -4,-1.6 4,-2.3 1,-0.2 -2,-0.2 0.920 116.9 46.4 -70.4 -47.9 -2.7 -5.5 0.3 86 210 A V H X5S+ 0 0 0 -4,-2.8 4,-2.5 2,-0.2 -1,-0.2 0.864 112.3 55.1 -61.7 -36.1 -0.5 -2.3 0.0 87 211 A E H XX S+ 0 0 29 -4,-2.3 4,-3.5 1,-0.2 3,-1.5 0.949 111.0 45.6 -54.0 -52.3 11.3 -3.8 -0.7 95 219 A E H 3X S+ 0 0 108 -4,-3.1 4,-2.2 1,-0.3 -1,-0.2 0.911 108.4 56.5 -52.4 -50.6 12.5 -7.4 -1.3 96 220 A R H 3< S+ 0 0 167 -4,-1.4 -1,-0.3 -5,-0.2 -2,-0.2 0.490 120.8 28.9 -70.6 -4.6 13.0 -6.7 -5.1 97 221 A E H S+ 0 0 35 -3,-0.4 4,-0.7 2,-0.2 -2,-0.2 0.766 110.3 59.1 -83.1 -22.9 20.2 -5.6 -4.9 101 225 A Y H < S+ 0 0 134 -4,-1.9 -1,-0.2 2,-0.1 -2,-0.2 0.859 119.3 33.1 -65.6 -34.3 21.2 -3.4 -1.9 102 226 A Y H < S+ 0 0 209 -4,-1.9 -2,-0.2 -5,-0.2 -3,-0.2 0.958 108.8 61.0 -82.1 -59.7 22.6 -6.7 -0.4 103 227 A Q H < 0 0 135 -4,-2.9 -3,-0.1 1,-0.3 -2,-0.1 0.530 360.0 360.0 -61.6 -16.6 23.9 -8.7 -3.4 104 228 A R < 0 0 225 -4,-0.7 -1,-0.3 -5,-0.1 -2,-0.1 0.469 360.0 360.0 -68.6 360.0 26.5 -6.0 -4.4