==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=20-JUL-2011 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 30-JUN-06 2HJJ . COMPND 2 MOLECULE: HYPOTHETICAL PROTEIN YKFF; . SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; . AUTHOR G.V.T.SWAPNA,J.M.ARAMINI,L.ZHAO,K.CUNNINGHAM,H.JANJUA,L.-C.M . 66 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 4708.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 48 72.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 12 18.2 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 1 1.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 1 1.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 8 12.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 7 10.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 17 25.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 1 1.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 10 A G 0 0 59 0, 0.0 50,-2.4 0, 0.0 48,-0.3 0.000 360.0 360.0 360.0-110.1 10.7 4.4 5.2 2 11 A P - 0 0 77 0, 0.0 2,-0.2 0, 0.0 44,-0.1 -0.216 360.0-140.4 -76.1 174.9 8.7 5.7 2.2 3 12 A F - 0 0 28 42,-0.7 2,-0.2 44,-0.1 47,-0.0 -0.604 6.3-118.7-127.0-175.1 8.3 4.0 -1.1 4 13 A T > - 0 0 69 -2,-0.2 4,-3.1 1,-0.1 5,-0.2 -0.757 32.4-104.0-122.3 170.4 8.2 4.7 -4.8 5 14 A R H > S+ 0 0 104 -2,-0.2 4,-1.7 2,-0.2 5,-0.1 0.881 125.5 46.9 -59.3 -39.5 5.6 4.3 -7.6 6 15 A R H > S+ 0 0 205 2,-0.2 4,-1.7 1,-0.2 -1,-0.2 0.955 112.7 47.1 -66.4 -52.4 7.7 1.4 -8.8 7 16 A Q H > S+ 0 0 115 1,-0.2 4,-1.6 2,-0.2 3,-0.3 0.927 109.1 55.6 -56.1 -48.0 8.1 -0.2 -5.3 8 17 A A H >X S+ 0 0 1 -4,-3.1 4,-1.6 1,-0.2 3,-0.7 0.925 105.9 51.6 -49.1 -51.1 4.3 0.2 -4.7 9 18 A Q H 3X S+ 0 0 113 -4,-1.7 4,-2.2 1,-0.3 -1,-0.2 0.877 108.5 51.8 -54.7 -40.3 3.6 -1.7 -7.8 10 19 A A H 3X S+ 0 0 50 -4,-1.7 4,-1.1 -3,-0.3 -1,-0.3 0.796 110.5 47.2 -70.2 -26.0 5.9 -4.5 -6.7 11 20 A V H < - 0 0 38 -4,-3.0 3,-2.1 1,-0.1 -1,-0.3 -0.837 63.7-174.8-105.8 99.8 -0.2 -8.4 -2.3 16 25 A S T 3 S+ 0 0 100 -2,-0.9 -1,-0.1 1,-0.3 -4,-0.1 0.525 80.5 75.9 -70.0 -4.6 -3.3 -8.0 -4.4 17 26 A N T 3 S+ 0 0 12 16,-0.1 16,-3.5 -3,-0.0 -1,-0.3 0.525 84.0 81.6 -82.3 -7.4 -5.0 -6.9 -1.3 18 27 A I E < -A 32 0A 9 -3,-2.1 2,-0.3 14,-0.2 14,-0.2 -0.608 65.0-168.8 -90.3 158.7 -3.1 -3.6 -1.7 19 28 A T E -A 31 0A 40 12,-0.6 12,-3.6 -2,-0.2 2,-0.8 -0.969 21.8-132.7-153.4 135.4 -4.4 -0.9 -4.0 20 29 A L E +A 30 0A 58 -2,-0.3 2,-0.2 10,-0.2 10,-0.2 -0.789 45.0 150.3 -90.7 109.8 -2.9 2.3 -5.4 21 30 A E E +A 29 0A 70 8,-2.4 8,-2.6 -2,-0.8 3,-0.1 -0.775 42.4 49.3-131.2 176.7 -5.5 5.1 -5.1 22 31 A D S S- 0 0 70 -2,-0.2 2,-0.3 6,-0.2 -1,-0.1 0.781 74.2-178.5 61.9 30.8 -5.6 8.9 -4.6 23 32 A D + 0 0 81 -3,-0.2 5,-0.2 1,-0.1 -1,-0.2 -0.442 26.3 151.3 -71.1 122.9 -3.1 9.1 -7.5 24 33 A Q S S- 0 0 145 3,-2.1 2,-0.7 -2,-0.3 4,-0.2 0.043 73.4 -85.8-133.8 18.3 -2.0 12.7 -8.3 25 34 A G S S+ 0 0 41 2,-0.2 3,-0.0 1,-0.2 -2,-0.0 -0.812 114.4 3.6 113.1 -92.0 1.4 11.8 -9.7 26 35 A S S S+ 0 0 85 -2,-0.7 2,-0.8 1,-0.1 -1,-0.2 0.551 122.1 80.4-100.6 -15.3 3.8 11.6 -6.8 27 36 A H + 0 0 94 18,-0.1 -3,-2.1 17,-0.1 2,-0.3 -0.845 65.6 114.9 -93.1 107.7 0.9 12.2 -4.4 28 37 A F - 0 0 2 -2,-0.8 17,-0.9 -5,-0.2 2,-0.4 -0.967 46.1-141.7-163.8 162.2 -0.8 8.9 -3.9 29 38 A R E -AB 21 44A 59 -8,-2.6 -8,-2.4 -2,-0.3 2,-0.5 -0.992 15.5-125.4-138.6 146.2 -1.6 6.4 -1.2 30 39 A L E -AB 20 43A 4 13,-2.2 13,-2.1 -2,-0.4 2,-0.8 -0.772 19.8-147.7 -91.8 126.2 -1.8 2.6 -1.0 31 40 A V E -AB 19 42A 0 -12,-3.6 2,-0.7 -2,-0.5 -12,-0.6 -0.849 7.5-151.4 -96.3 109.7 -5.0 1.2 0.4 32 41 A V E -AB 18 41A 4 9,-3.7 8,-2.6 -2,-0.8 9,-1.8 -0.745 22.6-178.9 -81.0 114.5 -4.4 -2.0 2.3 33 42 A R E - B 0 39A 55 -16,-3.5 6,-0.2 -2,-0.7 2,-0.1 -0.573 21.3-116.6-106.0 173.0 -7.5 -4.1 2.0 34 43 A D - 0 0 37 4,-1.1 -1,-0.1 -2,-0.2 6,-0.0 -0.231 49.3 -74.2 -95.6-167.9 -8.4 -7.6 3.5 35 44 A T S S+ 0 0 111 1,-0.2 -2,-0.0 2,-0.1 -1,-0.0 0.768 137.2 41.7 -60.7 -26.8 -9.2 -10.8 1.7 36 45 A E S S- 0 0 135 2,-0.1 -1,-0.2 -19,-0.0 -3,-0.0 0.746 121.9-105.2 -91.6 -27.4 -12.6 -9.4 0.8 37 46 A G + 0 0 28 1,-0.3 2,-0.2 -20,-0.0 -2,-0.1 0.617 64.2 153.4 108.4 19.6 -11.3 -6.0 -0.1 38 47 A R - 0 0 165 1,-0.1 -4,-1.1 2,-0.0 2,-0.5 -0.570 55.6-100.0 -78.6 144.0 -12.4 -4.0 2.9 39 48 A M E +B 33 0A 103 -2,-0.2 -6,-0.2 -6,-0.2 3,-0.1 -0.515 52.3 159.2 -66.2 114.3 -10.4 -0.9 3.8 40 49 A V E - 0 0 73 -8,-2.6 2,-0.3 -2,-0.5 -7,-0.2 0.751 67.5 -13.3-103.3 -35.1 -8.0 -1.9 6.6 41 50 A W E -B 32 0A 133 -9,-1.8 -9,-3.7 2,-0.0 2,-0.5 -0.848 52.6-163.9-172.3 125.5 -5.4 0.8 6.3 42 51 A R E -B 31 0A 85 -11,-0.3 2,-0.4 -2,-0.3 -11,-0.2 -0.977 14.9-179.2-120.0 125.2 -4.4 3.5 3.7 43 52 A A E -B 30 0A 10 -13,-2.1 -13,-2.2 -2,-0.5 7,-0.0 -0.954 21.6-122.1-125.9 143.2 -1.0 5.1 3.9 44 53 A W E -B 29 0A 70 -2,-0.4 -15,-0.2 -15,-0.3 -14,-0.2 0.050 14.0-126.0 -72.1-174.1 0.6 7.8 1.7 45 54 A N S S+ 0 0 15 -17,-0.9 -42,-0.7 -19,-0.1 5,-0.3 0.817 102.0 53.4-101.9 -43.4 3.7 7.7 -0.3 46 55 A F S S+ 0 0 98 -18,-0.2 -1,-0.1 -20,-0.1 -17,-0.1 0.296 78.5 124.6 -83.7 10.6 5.6 10.8 0.9 47 56 A E S > S- 0 0 81 1,-0.1 3,-1.7 -46,-0.1 4,-0.3 -0.585 71.1-124.4 -75.8 131.1 5.3 9.8 4.5 48 57 A P T 3 S+ 0 0 99 0, 0.0 -1,-0.1 0, 0.0 3,-0.1 0.775 107.0 11.7 -46.7 -37.0 8.7 9.5 6.3 49 58 A D T >> S+ 0 0 101 -48,-0.3 4,-0.7 1,-0.1 3,-0.7 -0.436 75.2 147.6-140.1 63.3 8.0 5.9 7.3 50 59 A A H X> S+ 0 0 6 -3,-1.7 4,-1.8 -5,-0.3 3,-0.5 0.891 75.6 59.7 -61.8 -38.3 4.9 4.9 5.3 51 60 A G H 3> S+ 0 0 12 -50,-2.4 4,-3.5 -4,-0.3 5,-0.3 0.745 90.1 72.6 -62.5 -23.7 6.3 1.4 5.2 52 61 A E H <> S+ 0 0 96 -3,-0.7 4,-1.2 2,-0.2 -1,-0.2 0.954 106.1 33.7 -58.1 -51.9 6.3 1.2 9.0 53 62 A G H X S+ 0 0 16 -4,-1.8 4,-2.6 1,-0.2 3,-0.6 0.930 108.9 49.1 -61.7 -46.5 2.3 -1.1 5.9 55 64 A N H 3X S+ 0 0 100 -4,-3.5 4,-3.4 1,-0.3 5,-0.3 0.801 104.1 61.2 -65.4 -29.5 4.8 -3.6 7.1 56 65 A R H 3< S+ 0 0 146 -4,-1.2 -1,-0.3 -5,-0.3 -2,-0.2 0.839 109.6 41.4 -66.0 -33.8 2.9 -3.9 10.4 57 66 A Y H << S+ 0 0 65 -4,-1.3 5,-0.4 -3,-0.6 -2,-0.2 0.920 115.4 51.2 -73.1 -46.6 -0.1 -5.1 8.4 58 67 A I H >X S+ 0 0 21 -4,-2.6 3,-2.4 -5,-0.1 4,-2.0 0.941 73.3 179.5 -55.5 -55.6 2.1 -7.3 6.2 59 68 A R T 3< S- 0 0 184 -4,-3.4 -3,-0.1 1,-0.3 -1,-0.1 0.793 73.6 -74.0 54.9 27.8 3.9 -9.0 9.1 60 69 A T T 34 S+ 0 0 138 -5,-0.3 -1,-0.3 1,-0.2 -2,-0.1 0.584 133.8 74.1 61.3 16.7 5.9 -11.0 6.5 61 70 A S T <>> + 0 0 61 -3,-2.4 5,-0.7 -4,-0.1 4,-0.6 0.700 64.9 161.5-113.7 -66.1 2.7 -13.0 5.9 62 71 A G T <5 - 0 0 4 -4,-2.0 4,-0.3 -5,-0.4 -4,-0.1 0.056 62.9 -72.3 65.7 179.6 0.3 -10.8 4.0 63 72 A I T 45S+ 0 0 43 1,-0.1 -1,-0.2 2,-0.1 -47,-0.1 0.350 111.5 91.1 -91.8 5.9 -2.7 -11.9 1.9 64 73 A R T 45S- 0 0 153 -3,-0.4 -2,-0.1 2,-0.1 -1,-0.1 0.987 115.7 -14.3 -60.2 -84.4 -0.3 -13.3 -0.7 65 74 A T T <5 0 0 128 -4,-0.6 -3,-0.1 1,-0.2 -2,-0.1 0.792 360.0 360.0 -91.7 -33.4 0.3 -16.9 0.3 66 75 A D < 0 0 152 -5,-0.7 -1,-0.2 -4,-0.3 -2,-0.1 -0.331 360.0 360.0 63.9 360.0 -1.2 -16.4 3.8