==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=31-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER STRUCTURAL GENOMICS 30-JUN-06 2HJQ . COMPND 2 MOLECULE: HYPOTHETICAL PROTEIN YQBF; . SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS SUBTILIS; . AUTHOR K.DING,T.A.RAMELOT,J.R.CORT,D.WANG,H.JANJUA,K.CUNNINGHAM,L.- . 111 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 8805.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 68 61.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 2 1.8 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 16 14.4 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 1 0.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 12 10.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 8 7.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 29 26.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 1 0.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 1 0 0 0 1 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 2 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A M 0 0 119 0, 0.0 45,-2.2 0, 0.0 2,-0.4 0.000 360.0 360.0 360.0 132.1 -6.1 -0.5 2.1 2 2 A F E +AB 27 45A 45 25,-0.7 25,-2.1 43,-0.2 2,-0.3 -0.851 360.0 179.0-105.2 142.2 -9.5 -1.8 3.1 3 3 A T E -AB 26 44A 30 41,-2.4 41,-2.2 -2,-0.4 2,-0.4 -0.998 10.8-162.7-144.1 146.2 -12.7 -0.1 1.9 4 4 A A E -AB 25 43A 0 21,-2.2 21,-2.2 -2,-0.3 2,-0.4 -0.964 1.0-166.2-128.5 145.7 -16.4 -0.7 2.4 5 5 A K E -AB 24 42A 64 37,-1.7 37,-2.7 -2,-0.4 2,-0.3 -0.997 29.6-112.7-134.8 129.6 -19.4 0.6 0.5 6 6 A L E +cB 21 41A 3 14,-0.7 16,-0.9 17,-0.7 35,-0.3 -0.431 44.3 156.4 -64.1 117.8 -23.1 0.4 1.6 7 7 A I S S+ 0 0 96 33,-2.6 34,-0.2 -2,-0.3 -1,-0.2 0.656 77.7 41.1-108.4 -28.5 -25.0 -1.9 -0.7 8 8 A K S S+ 0 0 150 32,-3.0 33,-0.1 2,-0.0 32,-0.1 0.807 119.3 36.8 -88.9 -34.3 -27.8 -2.9 1.8 9 9 A G - 0 0 17 31,-0.7 3,-0.1 1,-0.1 11,-0.1 -0.089 60.6-143.7-105.1-157.8 -28.3 0.6 3.3 10 10 A K S S+ 0 0 156 9,-0.1 11,-1.6 10,-0.1 2,-0.3 0.426 92.9 4.8-139.9 -41.8 -28.4 4.2 2.3 11 11 A T E S+D 20 0B 66 9,-0.3 2,-0.4 2,-0.0 9,-0.3 -0.843 76.6 167.0-152.3 114.4 -26.9 5.8 5.3 12 12 A Y E -D 19 0B 91 7,-3.0 7,-3.1 -2,-0.3 2,-0.7 -0.984 27.4-142.5-136.3 139.1 -25.6 3.7 8.2 13 13 A N E -D 18 0B 108 -2,-0.4 2,-0.8 5,-0.2 5,-0.2 -0.895 13.7-166.7-106.9 112.4 -23.5 4.4 11.3 14 14 A V E > -D 17 0B 7 3,-2.7 3,-2.9 -2,-0.7 2,-2.1 -0.865 64.9 -56.3-102.1 104.3 -21.0 1.6 12.2 15 15 A M T 3 S- 0 0 164 -2,-0.8 -2,-0.1 1,-0.3 3,-0.0 -0.415 125.2 -22.2 65.7 -79.7 -19.6 2.2 15.7 16 16 A G T 3 S+ 0 0 62 -2,-2.1 2,-0.4 2,-0.0 -1,-0.3 0.195 119.4 97.8-141.4 10.9 -18.3 5.7 14.9 17 17 A I E < -D 14 0B 49 -3,-2.9 -3,-2.7 2,-0.0 2,-0.6 -0.853 61.3-143.8-108.0 139.6 -18.0 5.5 11.2 18 18 A T E -D 13 0B 66 -2,-0.4 2,-0.3 -5,-0.2 -5,-0.2 -0.897 20.2-178.6-108.9 113.3 -20.6 6.9 8.8 19 19 A F E -D 12 0B 0 -7,-3.1 -7,-3.0 -2,-0.6 2,-0.4 -0.814 6.0-167.0-107.4 148.9 -21.2 5.0 5.6 20 20 A R E > -D 11 0B 138 3,-0.5 3,-2.6 -2,-0.3 -14,-0.7 -0.988 36.0 -94.1-133.0 143.3 -23.6 5.9 2.8 21 21 A A B 3 S+c 6 0A 38 -11,-1.6 -14,-0.2 -2,-0.4 3,-0.1 -0.354 115.8 18.6 -55.3 127.2 -24.9 3.7 -0.1 22 22 A G T 3 S+ 0 0 59 -16,-0.9 2,-0.7 1,-0.2 -1,-0.3 0.233 103.2 109.0 93.8 -13.3 -22.6 4.4 -3.1 23 23 A V < - 0 0 65 -3,-2.6 -17,-0.7 -17,-0.1 -3,-0.5 -0.874 55.2-157.2-103.8 113.5 -20.0 5.9 -0.9 24 24 A S E -A 5 0A 73 -2,-0.7 2,-0.4 -19,-0.2 -19,-0.2 -0.726 14.1-175.2 -85.5 136.3 -16.8 3.8 -0.4 25 25 A Q E -A 4 0A 65 -21,-2.2 -21,-2.2 -2,-0.4 2,-0.2 -0.999 27.1-114.8-138.0 134.3 -14.8 4.6 2.7 26 26 A T E -A 3 0A 95 -2,-0.4 -23,-0.3 -23,-0.2 19,-0.1 -0.479 38.3-176.4 -70.4 130.6 -11.4 3.2 3.8 27 27 A V E -A 2 0A 10 -25,-2.1 -25,-0.7 -2,-0.2 2,-0.0 -0.880 25.8-106.7-126.7 155.4 -11.6 1.1 7.0 28 28 A P > - 0 0 75 0, 0.0 4,-2.3 0, 0.0 3,-0.3 -0.294 42.2 -99.2 -70.9 166.7 -9.1 -0.7 9.2 29 29 A K H > S+ 0 0 117 1,-0.2 4,-2.0 2,-0.2 5,-0.3 0.857 122.6 59.8 -56.7 -36.9 -8.7 -4.5 9.2 30 30 A K H > S+ 0 0 175 1,-0.2 4,-1.7 2,-0.2 -1,-0.2 0.938 110.5 38.6 -56.3 -51.2 -10.8 -4.6 12.4 31 31 A L H > S+ 0 0 16 -3,-0.3 4,-2.9 2,-0.2 -1,-0.2 0.815 109.2 63.4 -73.8 -30.1 -13.8 -3.0 10.7 32 32 A Y H < S+ 0 0 34 -4,-2.3 4,-0.3 1,-0.2 -1,-0.2 0.929 112.2 35.0 -59.2 -46.9 -13.2 -4.9 7.4 33 33 A E H X S+ 0 0 102 -4,-2.0 4,-1.2 2,-0.2 -1,-0.2 0.787 114.3 58.5 -80.6 -27.2 -13.8 -8.2 9.1 34 34 A Y H X S+ 0 0 114 -4,-1.7 4,-1.2 -5,-0.3 3,-0.3 0.912 113.2 39.2 -63.3 -41.8 -16.5 -6.7 11.3 35 35 A L H < S+ 0 0 3 -4,-2.9 6,-0.4 2,-0.2 5,-0.3 0.527 103.9 70.9 -85.3 -8.2 -18.3 -5.7 8.2 36 36 A N H 4 S+ 0 0 108 -4,-0.3 -1,-0.2 -5,-0.2 -2,-0.2 0.812 104.7 41.1 -72.1 -32.2 -17.3 -9.0 6.7 37 37 A E H < S+ 0 0 149 -4,-1.2 -2,-0.2 -3,-0.3 -1,-0.2 0.857 106.1 73.2 -76.0 -39.0 -19.8 -10.5 9.1 38 38 A N S >< S- 0 0 34 -4,-1.2 2,-1.9 -5,-0.1 3,-1.0 -0.684 73.5-153.0 -86.4 108.9 -22.3 -7.7 8.5 39 39 A P T 3 S+ 0 0 105 0, 0.0 -1,-0.1 0, 0.0 -3,-0.1 -0.123 71.8 95.4 -78.2 44.8 -23.9 -8.2 5.0 40 40 A Y T 3 S+ 0 0 78 -2,-1.9 -32,-3.0 -5,-0.3 -33,-2.6 0.599 80.2 50.1-102.4 -16.6 -24.7 -4.5 4.5 41 41 A F E < S-B 6 0A 13 -3,-1.0 2,-0.5 -6,-0.4 -35,-0.2 -0.793 73.1-123.8-125.4 158.8 -21.6 -3.6 2.5 42 42 A I E -B 5 0A 80 -37,-2.7 -37,-1.7 -2,-0.3 2,-0.4 -0.908 36.2-145.5 -97.1 131.6 -19.5 -4.7 -0.4 43 43 A L E +B 4 0A 38 -2,-0.5 2,-0.3 -39,-0.2 -39,-0.2 -0.849 24.3 167.3-108.6 134.4 -16.0 -5.3 0.7 44 44 A T E -B 3 0A 59 -41,-2.2 -41,-2.4 -2,-0.4 2,-0.4 -0.993 11.7-170.6-144.4 133.4 -12.9 -4.5 -1.3 45 45 A Q E +B 2 0A 105 -2,-0.3 2,-0.3 -43,-0.2 -43,-0.2 -0.995 10.6 173.9-127.4 130.1 -9.2 -4.4 -0.3 46 46 A E - 0 0 140 -45,-2.2 2,-0.7 -2,-0.4 3,-0.2 -0.957 28.1-127.3-133.1 151.7 -6.4 -3.1 -2.6 47 47 A L + 0 0 127 -2,-0.3 3,-0.1 1,-0.2 -2,-0.0 -0.869 25.5 170.8-106.1 106.1 -2.8 -2.5 -2.1 48 48 A N S S+ 0 0 126 -2,-0.7 2,-1.3 1,-0.2 3,-0.2 0.849 78.6 65.1 -74.5 -37.0 -1.5 1.0 -3.1 49 49 A N + 0 0 88 1,-0.2 -1,-0.2 -3,-0.2 3,-0.2 -0.721 60.9 157.0 -87.4 88.7 1.8 0.1 -1.4 50 50 A Q S S+ 0 0 168 -2,-1.3 2,-0.4 1,-0.3 -1,-0.2 0.946 71.8 4.4 -76.8 -55.2 2.9 -2.7 -3.7 51 51 A K S S+ 0 0 167 -3,-0.2 -1,-0.3 2,-0.0 2,-0.2 -0.976 70.2 158.0-136.9 121.4 6.6 -2.4 -2.9 52 52 A D - 0 0 88 -2,-0.4 -3,-0.0 -3,-0.2 0, 0.0 -0.316 62.4 -63.8-112.2-156.5 8.3 -0.1 -0.4 53 53 A D - 0 0 75 -2,-0.2 2,-1.6 3,-0.1 3,-0.4 -0.834 52.5-161.3 -96.7 98.9 11.7 -0.4 1.3 54 54 A P + 0 0 28 0, 0.0 23,-0.2 0, 0.0 22,-0.2 -0.552 68.3 73.5 -89.3 76.4 11.2 -3.6 3.3 55 55 A I S S+ 0 0 0 -2,-1.6 42,-0.5 1,-0.2 2,-0.3 0.097 81.6 70.6-169.6 27.9 14.0 -3.4 5.9 56 56 A N + 0 0 12 -3,-0.4 2,-0.3 41,-0.2 -1,-0.2 -0.841 53.8 140.4-160.5 109.4 12.8 -0.7 8.3 57 57 A Y - 0 0 91 -2,-0.3 2,-0.2 34,-0.2 41,-0.1 -0.847 57.7 -63.2-142.1 174.8 9.9 -1.1 10.7 58 58 A T > - 0 0 67 -2,-0.3 4,-2.6 1,-0.2 3,-0.3 -0.483 34.9-142.1 -64.2 129.4 8.9 -0.2 14.3 59 59 A E H > S+ 0 0 72 1,-0.3 4,-1.8 2,-0.2 -1,-0.2 0.856 107.8 58.4 -60.3 -31.3 11.1 -1.9 16.8 60 60 A S H > S+ 0 0 64 2,-0.2 4,-0.6 1,-0.2 -1,-0.3 0.877 110.0 41.7 -62.0 -38.0 7.9 -2.2 18.7 61 61 A E H 4 S+ 0 0 102 -3,-0.3 -2,-0.2 1,-0.2 -1,-0.2 0.814 114.0 51.8 -79.2 -29.6 6.5 -4.2 15.8 62 62 A L H >< S+ 0 0 3 -4,-2.6 3,-0.9 1,-0.2 -2,-0.2 0.701 100.2 63.4 -79.9 -20.2 9.8 -6.0 15.3 63 63 A K H 3< S+ 0 0 137 -4,-1.8 -1,-0.2 1,-0.2 -2,-0.2 0.797 113.9 34.6 -68.0 -31.0 9.7 -7.0 19.0 64 64 A G T 3< S+ 0 0 61 -4,-0.6 2,-0.4 -3,-0.2 -1,-0.2 0.008 97.4 113.3-110.5 26.2 6.5 -8.9 18.2 65 65 A M < - 0 0 62 -3,-0.9 5,-0.1 1,-0.1 -3,-0.1 -0.860 66.4-117.2-104.3 135.5 7.7 -9.9 14.7 66 66 A N > - 0 0 116 -2,-0.4 4,-2.1 1,-0.1 5,-0.2 -0.006 22.8-104.2 -71.9 170.0 8.3 -13.6 14.0 67 67 A K H > S+ 0 0 134 1,-0.2 4,-1.7 2,-0.2 5,-0.1 0.952 119.9 42.2 -55.4 -58.2 11.6 -15.4 13.0 68 68 A A H > S+ 0 0 50 1,-0.2 4,-2.8 2,-0.2 -1,-0.2 0.753 109.8 61.3 -67.5 -24.7 10.8 -15.9 9.3 69 69 A E H > S+ 0 0 90 2,-0.2 4,-2.2 1,-0.2 -1,-0.2 0.967 104.7 45.6 -65.0 -54.1 9.4 -12.3 9.2 70 70 A H H X S+ 0 0 8 -4,-2.1 4,-2.0 1,-0.2 -2,-0.2 0.879 115.1 50.3 -53.7 -40.7 12.7 -10.8 10.1 71 71 A E H X S+ 0 0 43 -4,-1.7 4,-2.1 2,-0.2 -2,-0.2 0.943 108.6 48.1 -68.0 -49.2 14.4 -13.0 7.6 72 72 A S H X S+ 0 0 55 -4,-2.8 4,-1.6 2,-0.2 -1,-0.2 0.868 110.6 55.9 -61.1 -35.8 12.2 -12.3 4.7 73 73 A I H >X S+ 0 0 13 -4,-2.2 4,-1.2 2,-0.2 3,-0.8 0.985 112.3 38.0 -55.7 -61.6 12.6 -8.6 5.5 74 74 A I H 3X>S+ 0 0 0 -4,-2.0 5,-2.5 1,-0.3 4,-1.2 0.748 110.8 61.9 -70.9 -21.4 16.4 -8.5 5.3 75 75 A S H 3<5S+ 0 0 68 -4,-2.1 -1,-0.3 2,-0.2 -2,-0.2 0.862 102.6 50.7 -67.7 -35.1 16.3 -11.0 2.4 76 76 A N H <<5S+ 0 0 98 -4,-1.6 -2,-0.2 -3,-0.8 -1,-0.2 0.785 105.1 57.4 -72.1 -28.3 14.4 -8.3 0.4 77 77 A L H <5S- 0 0 41 -4,-1.2 -1,-0.2 -23,-0.2 -2,-0.2 0.839 120.8-113.4 -64.4 -34.9 17.1 -5.9 1.4 78 78 A G T <5S+ 0 0 48 -4,-1.2 2,-0.3 1,-0.4 -3,-0.2 0.624 77.7 116.0 105.5 19.4 19.6 -8.3 -0.2 79 79 A R < - 0 0 115 -5,-2.5 -1,-0.4 2,-0.0 -2,-0.1 -0.807 69.6-112.9-115.0 159.6 21.4 -9.4 2.9 80 80 A N > - 0 0 126 -2,-0.3 3,-0.9 1,-0.1 4,-0.4 -0.828 24.3-175.2 -95.2 107.2 21.7 -12.8 4.5 81 81 A P T 3 + 0 0 8 0, 0.0 -1,-0.1 0, 0.0 9,-0.1 0.268 67.0 92.4 -82.9 12.8 19.9 -12.7 7.9 82 82 A S T 3 S+ 0 0 89 1,-0.2 -11,-0.0 -11,-0.1 -2,-0.0 0.751 81.6 53.0 -77.9 -25.7 21.1 -16.3 8.6 83 83 A D S < S+ 0 0 106 -3,-0.9 2,-0.9 1,-0.1 -1,-0.2 0.877 96.6 73.1 -75.8 -37.5 24.2 -15.0 10.4 84 84 A F + 0 0 47 -4,-0.4 -1,-0.1 1,-0.2 0, 0.0 -0.685 56.9 160.3 -82.0 108.6 22.2 -12.9 12.7 85 85 A K + 0 0 145 -2,-0.9 2,-0.2 5,-0.0 -1,-0.2 0.739 47.3 74.3-105.3 -29.6 20.6 -15.4 15.0 86 86 A N S > S- 0 0 109 1,-0.1 4,-1.9 4,-0.0 5,-0.2 -0.557 80.7-124.5 -89.7 153.2 19.6 -13.3 18.0 87 87 A A H > S+ 0 0 64 1,-0.2 4,-3.0 -2,-0.2 5,-0.3 0.889 110.4 59.6 -61.2 -39.8 16.6 -10.9 18.0 88 88 A D H > S+ 0 0 130 1,-0.2 4,-2.5 2,-0.2 5,-0.2 0.917 106.1 47.1 -54.6 -48.8 18.9 -8.1 19.1 89 89 A E H > S+ 0 0 55 1,-0.2 4,-2.2 2,-0.2 -1,-0.2 0.938 115.3 45.0 -57.9 -50.5 21.1 -8.5 16.0 90 90 A R H X S+ 0 0 21 -4,-1.9 4,-1.6 2,-0.2 -2,-0.2 0.871 115.2 46.1 -67.2 -39.9 18.1 -8.6 13.6 91 91 A I H X S+ 0 0 16 -4,-3.0 4,-2.2 2,-0.2 -1,-0.2 0.932 113.3 49.0 -70.0 -44.2 16.2 -5.7 15.2 92 92 A A H X S+ 0 0 51 -4,-2.5 4,-1.1 -5,-0.3 -2,-0.2 0.902 110.3 51.1 -62.0 -42.4 19.2 -3.4 15.3 93 93 A Y H X S+ 0 0 68 -4,-2.2 4,-0.6 -5,-0.2 3,-0.4 0.898 111.3 47.5 -64.2 -40.6 20.2 -4.1 11.7 94 94 A I H >X S+ 0 0 0 -4,-1.6 4,-1.2 1,-0.2 3,-1.1 0.870 106.9 58.1 -67.5 -34.9 16.6 -3.3 10.6 95 95 A L H 3X S+ 0 0 57 -4,-2.2 4,-1.1 1,-0.3 -1,-0.2 0.752 93.8 67.5 -67.4 -23.7 16.7 -0.1 12.7 96 96 A K H 3< S+ 0 0 98 -4,-1.1 4,-0.5 -3,-0.4 -1,-0.3 0.836 103.0 45.1 -63.7 -30.2 19.8 1.0 10.7 97 97 A Q H S- 0 0 116 3,-0.1 3,-0.5 -3,-0.1 -3,-0.1 -0.582 73.8-117.7 -89.1 147.3 12.5 18.8 -2.7 108 108 A H T 3 S+ 0 0 175 -2,-0.2 -1,-0.1 1,-0.2 -2,-0.0 -0.191 93.8 50.1 -77.0 175.2 11.9 22.6 -2.7 109 109 A H T 3 S+ 0 0 182 1,-0.0 -1,-0.2 -2,-0.0 -2,-0.0 0.552 108.3 67.0 67.6 9.2 8.4 24.1 -3.1 110 110 A H < 0 0 128 -3,-0.5 -3,-0.1 -5,-0.1 -1,-0.0 -0.387 360.0 360.0-153.3 62.7 7.4 21.7 -0.4 111 111 A H 0 0 245 -5,-0.1 -3,-0.1 0, 0.0 -6,-0.0 0.333 360.0 360.0-150.5 360.0 9.3 22.9 2.7