==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=4-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER DNA-BINDING 10-FEB-94 1HME . COMPND 2 MOLECULE: HIGH MOBILITY GROUP PROTEIN FRAGMENT-B; . SOURCE 2 ORGANISM_SCIENTIFIC: RATTUS NORVEGICUS; . AUTHOR H.M.WEIR,P.J.KRAULIS,C.S.HILL,A.R.C.RAINE,E.D.LAUE, . 77 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 6565.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 51 66.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 1 1.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 10 13.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 39 50.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 1 1.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A F 0 0 243 0, 0.0 2,-0.5 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 31.0 11.1 33.3 -3.5 2 2 A K - 0 0 191 1,-0.1 3,-0.0 2,-0.1 0, 0.0 -0.193 360.0-130.2 -46.9 97.4 11.0 29.5 -3.1 3 3 A D - 0 0 108 -2,-0.5 -1,-0.1 1,-0.2 0, 0.0 -0.358 10.3-148.5 -55.0 114.6 13.5 29.2 -0.3 4 4 A P S S+ 0 0 108 0, 0.0 -1,-0.2 0, 0.0 70,-0.1 0.813 94.2 57.7 -57.4 -28.6 15.9 26.5 -1.5 5 5 A N S S+ 0 0 66 68,-0.1 69,-0.2 2,-0.1 65,-0.1 1.000 81.0 83.9 -65.0 -68.3 16.4 25.4 2.1 6 6 A A + 0 0 54 1,-0.1 2,-0.1 68,-0.0 -1,-0.0 -0.080 68.8 169.5 -39.8 101.4 12.8 24.6 3.1 7 7 A P - 0 0 38 0, 0.0 2,-0.3 0, 0.0 -1,-0.1 -0.105 31.5-113.1-102.7-157.9 12.6 21.0 1.8 8 8 A K - 0 0 165 -2,-0.1 -2,-0.0 0, 0.0 59,-0.0 -0.997 21.3-135.3-142.9 137.7 10.2 18.1 2.0 9 9 A R - 0 0 175 -2,-0.3 55,-0.1 1,-0.1 54,-0.0 -0.696 32.7 -94.5 -97.9 150.2 10.8 14.8 3.8 10 10 A P - 0 0 37 0, 0.0 -1,-0.1 0, 0.0 3,-0.1 -0.181 41.0-129.5 -55.7 151.5 9.8 11.3 2.3 11 11 A P - 0 0 67 0, 0.0 2,-0.2 0, 0.0 3,-0.0 0.202 50.2 -46.6 -83.1-150.5 6.4 10.0 3.4 12 12 A S >> - 0 0 77 1,-0.1 4,-1.4 2,-0.0 3,-1.3 -0.572 48.4-123.2 -83.5 146.2 5.7 6.5 4.8 13 13 A A T 34 S+ 0 0 47 1,-0.3 4,-0.4 -2,-0.2 3,-0.3 0.910 117.1 42.5 -54.2 -42.4 7.3 3.5 3.1 14 14 A F T 3> S+ 0 0 48 1,-0.2 4,-2.6 2,-0.2 -1,-0.3 0.546 100.6 71.9 -81.5 -8.0 3.9 2.0 2.7 15 15 A F H <> S+ 0 0 114 -3,-1.3 4,-1.4 2,-0.2 -1,-0.2 0.881 96.7 51.3 -72.2 -34.1 2.4 5.4 1.7 16 16 A L H < S+ 0 0 35 -4,-1.4 4,-0.3 -3,-0.3 -1,-0.2 0.743 112.5 48.2 -70.1 -22.1 4.3 5.0 -1.5 17 17 A F H >> S+ 0 0 0 -4,-0.4 4,-2.7 -5,-0.2 3,-0.8 0.840 100.2 64.2 -85.8 -39.3 2.6 1.6 -1.7 18 18 A C H 3X S+ 0 0 11 -4,-2.6 4,-0.9 1,-0.3 -2,-0.2 0.969 98.4 53.3 -48.7 -62.2 -0.9 2.8 -0.9 19 19 A S H 3< S+ 0 0 90 -4,-1.4 -1,-0.3 1,-0.2 3,-0.2 0.795 113.4 47.3 -44.9 -30.8 -1.1 4.8 -4.1 20 20 A E H <4 S+ 0 0 83 -3,-0.8 4,-0.4 -4,-0.3 -1,-0.2 0.945 120.8 32.2 -79.3 -50.4 -0.2 1.7 -5.9 21 21 A Y H X S+ 0 0 84 -4,-2.7 4,-0.7 1,-0.2 5,-0.2 0.109 99.0 87.9 -93.9 23.6 -2.6 -0.8 -4.2 22 22 A R H X S+ 0 0 98 -4,-0.9 4,-1.5 -3,-0.2 -1,-0.2 0.845 89.1 42.2 -89.1 -35.0 -5.3 1.7 -3.6 23 23 A P H > S+ 0 0 76 0, 0.0 4,-1.7 0, 0.0 6,-0.2 0.833 107.9 61.3 -79.9 -33.1 -7.2 1.4 -7.0 24 24 A K H > S+ 0 0 134 -4,-0.4 4,-1.4 2,-0.2 -2,-0.1 0.975 118.6 26.2 -57.1 -56.9 -7.0 -2.4 -7.0 25 25 A I H X S+ 0 0 14 -4,-0.7 4,-1.2 2,-0.2 3,-0.4 0.988 125.7 47.1 -71.3 -59.6 -8.9 -2.9 -3.9 26 26 A K H < S+ 0 0 73 -4,-1.5 -1,-0.2 -5,-0.2 -2,-0.2 0.780 105.3 67.5 -53.5 -23.2 -10.9 0.4 -4.0 27 27 A G H < S+ 0 0 50 -4,-1.7 -1,-0.2 1,-0.2 -2,-0.2 0.992 111.3 28.5 -60.5 -60.5 -11.6 -0.7 -7.6 28 28 A E H < S+ 0 0 162 -4,-1.4 -1,-0.2 -3,-0.4 -2,-0.2 0.492 129.5 50.3 -78.0 -1.7 -13.7 -3.6 -6.7 29 29 A H >< + 0 0 88 -4,-1.2 3,-1.3 -6,-0.2 2,-1.1 -0.528 59.4 169.3-136.2 69.0 -14.6 -1.7 -3.5 30 30 A P T 3 S+ 0 0 116 0, 0.0 -4,-0.1 0, 0.0 -3,-0.1 0.068 77.9 57.9 -69.6 31.6 -15.8 1.8 -4.4 31 31 A G T 3 + 0 0 70 -2,-1.1 2,-0.1 -5,-0.1 -5,-0.1 0.101 69.2 142.4-148.6 27.1 -16.9 2.2 -0.8 32 32 A L < - 0 0 29 -3,-1.3 2,-0.3 -6,-0.1 -3,-0.0 -0.424 46.9-126.6 -74.2 149.5 -13.9 1.6 1.4 33 33 A S > - 0 0 70 1,-0.1 4,-2.8 -2,-0.1 3,-0.3 -0.705 26.2-110.0 -93.3 145.9 -13.5 3.7 4.5 34 34 A I H > S+ 0 0 129 -2,-0.3 4,-1.6 1,-0.3 5,-0.2 0.807 123.9 54.3 -44.5 -27.7 -10.3 5.6 5.1 35 35 A G H > S+ 0 0 37 2,-0.2 4,-2.9 3,-0.1 -1,-0.3 0.969 110.3 42.5 -72.3 -51.1 -9.8 3.0 7.8 36 36 A D H >>S+ 0 0 66 -3,-0.3 4,-2.3 2,-0.2 5,-0.6 0.928 111.7 55.5 -60.6 -46.8 -10.2 -0.0 5.5 37 37 A V H X5S+ 0 0 4 -4,-2.8 4,-1.9 1,-0.2 -1,-0.2 0.968 116.6 34.8 -50.7 -59.9 -8.2 1.5 2.7 38 38 A A H X5S+ 0 0 41 -4,-1.6 4,-1.5 -5,-0.3 -1,-0.2 0.845 117.6 54.9 -66.9 -34.4 -5.2 2.0 4.9 39 39 A K H >X5S+ 0 0 150 -4,-2.9 4,-1.7 2,-0.2 3,-0.7 0.997 112.2 39.4 -63.9 -63.3 -5.8 -1.1 7.0 40 40 A K H 3X5S+ 0 0 87 -4,-2.3 4,-2.7 1,-0.3 5,-0.4 0.903 113.6 56.4 -53.4 -42.6 -5.9 -3.7 4.2 41 41 A L H 3X< S+ 0 0 27 -4,-2.3 3,-1.2 -5,-0.4 -2,-0.2 0.988 110.5 47.6 -58.7 -60.8 2.1 -4.4 2.5 46 46 A N H 3< S+ 0 0 107 -4,-3.1 -1,-0.2 1,-0.3 -2,-0.2 0.877 116.4 46.5 -48.2 -39.2 3.0 -6.3 5.7 47 47 A N H 3< S+ 0 0 118 -4,-3.1 -1,-0.3 -5,-0.2 -2,-0.2 0.730 85.7 113.0 -77.6 -21.7 2.6 -9.4 3.6 48 48 A T S << S- 0 0 26 -4,-1.8 5,-0.1 -3,-1.2 -3,-0.0 -0.292 83.1-103.7 -53.6 125.6 4.6 -8.0 0.7 49 49 A A >> - 0 0 53 1,-0.1 3,-1.8 3,-0.1 4,-1.0 -0.194 24.4-121.8 -51.3 138.6 7.8 -10.1 0.5 50 50 A A G >4 S+ 0 0 75 1,-0.3 3,-1.0 2,-0.2 4,-0.5 0.893 116.3 54.7 -50.9 -40.2 10.8 -8.1 1.9 51 51 A D G 34 S+ 0 0 118 1,-0.2 3,-0.4 2,-0.2 -1,-0.3 0.756 105.1 54.0 -66.5 -22.3 12.4 -8.5 -1.5 52 52 A D G <4 S+ 0 0 88 -3,-1.8 4,-0.3 1,-0.2 -1,-0.2 0.618 96.7 65.2 -86.2 -13.6 9.3 -6.9 -3.1 53 53 A K S S+ 0 0 77 -4,-0.5 4,-3.4 -3,-0.4 5,-0.4 0.919 77.7 54.3 -45.8 -58.9 12.7 -2.9 -2.6 55 55 A P H > S+ 0 0 84 0, 0.0 4,-1.9 0, 0.0 -1,-0.2 0.882 114.4 43.2 -47.1 -42.5 11.2 -0.6 -5.2 56 56 A Y H > S+ 0 0 38 -3,-0.5 4,-2.5 -4,-0.3 5,-0.2 0.990 118.5 38.7 -70.9 -60.8 9.5 1.4 -2.5 57 57 A E H X S+ 0 0 103 -4,-2.4 4,-2.0 1,-0.2 -3,-0.2 0.928 117.9 53.3 -55.8 -42.1 12.2 1.7 0.1 58 58 A K H X S+ 0 0 125 -4,-3.4 4,-1.5 -5,-0.4 -1,-0.2 0.916 105.8 53.1 -58.7 -43.7 14.6 2.1 -2.7 59 59 A K H >X S+ 0 0 126 -4,-1.9 4,-1.7 -5,-0.4 3,-1.2 0.969 106.6 51.3 -57.2 -53.0 12.5 4.9 -4.1 60 60 A A H 3X S+ 0 0 22 -4,-2.5 4,-1.3 1,-0.3 -1,-0.2 0.879 106.9 56.3 -52.1 -36.3 12.5 6.7 -0.8 61 61 A A H 3X S+ 0 0 36 -4,-2.0 4,-2.3 -5,-0.2 -1,-0.3 0.824 102.6 56.1 -67.0 -29.9 16.3 6.3 -0.9 62 62 A K H X S+ 0 0 43 -4,-1.9 3,-2.2 1,-0.2 4,-1.1 0.952 106.5 41.6 -54.7 -87.4 17.1 15.5 0.3 68 68 A E H 3X S+ 0 0 121 -4,-0.9 4,-0.9 1,-0.3 -1,-0.2 0.582 98.5 85.0 -39.1 -12.5 20.1 15.7 2.7 69 69 A K H 34 S+ 0 0 157 -5,-0.4 -1,-0.3 -3,-0.3 -2,-0.2 0.930 109.0 13.1 -61.8 -45.5 21.9 17.1 -0.2 70 70 A D H XX S+ 0 0 98 -3,-2.2 3,-1.5 -4,-0.7 4,-0.8 0.574 111.3 80.4-107.2 -13.6 20.7 20.7 0.4 71 71 A I H 3< + 0 0 26 -4,-1.1 3,-0.2 1,-0.3 -3,-0.1 0.821 68.0 86.3 -63.4 -30.2 19.3 20.3 3.9 72 72 A A T 3< S+ 0 0 99 -4,-0.9 -1,-0.3 1,-0.3 -2,-0.1 0.787 99.8 39.1 -40.9 -27.4 22.9 20.6 5.4 73 73 A A T <4 S+ 0 0 75 -3,-1.5 -1,-0.3 -68,-0.1 -2,-0.2 0.811 106.0 78.4 -92.8 -36.2 22.1 24.3 5.2 74 74 A Y S < S- 0 0 80 -4,-0.8 2,-0.1 -3,-0.2 -68,-0.0 -0.032 79.6-120.0 -64.1 176.4 18.4 24.1 6.3 75 75 A R - 0 0 146 0, 0.0 2,-0.3 0, 0.0 -1,-0.1 -0.219 13.8-125.0-105.3-163.2 17.5 23.6 9.9 76 76 A A 0 0 96 -2,-0.1 -5,-0.0 1,-0.1 0, 0.0 -0.888 360.0 360.0-153.7 118.5 15.5 21.0 11.9 77 77 A K 0 0 238 -2,-0.3 -1,-0.1 0, 0.0 0, 0.0 0.533 360.0 360.0-142.8 360.0 12.5 21.5 14.1