==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=4-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER DNA-BINDING 07-MAR-94 1HMF . COMPND 2 MOLECULE: HIGH MOBILITY GROUP PROTEIN FRAGMENT-B; . SOURCE 2 ORGANISM_SCIENTIFIC: RATTUS NORVEGICUS; . AUTHOR H.M.WEIR,P.J.KRAULIS,C.S.HILL,A.R.C.RAINE,E.D.LAUE, . 77 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 6491.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 52 67.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 3 3.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 8 10.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 41 53.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A F 0 0 257 0, 0.0 2,-0.5 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 120.5 2.5 32.4 6.9 2 2 A K + 0 0 188 1,-0.1 0, 0.0 2,-0.0 0, 0.0 -0.886 360.0 125.1-126.3 101.6 5.6 30.2 7.1 3 3 A D + 0 0 131 -2,-0.5 -1,-0.1 3,-0.0 0, 0.0 -0.329 21.1 132.3-154.4 65.4 7.0 28.9 3.8 4 4 A P S S+ 0 0 92 0, 0.0 70,-0.0 0, 0.0 -2,-0.0 0.908 87.5 9.9 -80.7 -91.4 10.7 29.8 3.3 5 5 A N S S+ 0 0 87 66,-0.1 69,-0.1 65,-0.0 65,-0.1 0.502 86.9 169.8 -70.0 1.5 12.8 26.7 2.2 6 6 A A + 0 0 37 1,-0.1 -3,-0.0 65,-0.0 -1,-0.0 0.256 11.2 172.6 -18.8 86.3 9.5 25.0 1.8 7 7 A P - 0 0 42 0, 0.0 2,-0.6 0, 0.0 -1,-0.1 0.157 39.1 -75.5 -86.6-154.2 10.8 21.9 0.0 8 8 A K - 0 0 169 59,-0.0 -2,-0.0 0, 0.0 59,-0.0 -0.948 38.7-152.5-115.8 119.0 8.9 18.7 -0.9 9 9 A R - 0 0 172 -2,-0.6 55,-0.0 58,-0.0 -3,-0.0 -0.785 13.5-138.5 -93.2 122.4 8.2 16.2 1.9 10 10 A P - 0 0 57 0, 0.0 -1,-0.0 0, 0.0 50,-0.0 -0.323 16.3-125.0 -74.8 162.4 7.8 12.6 0.8 11 11 A P - 0 0 66 0, 0.0 2,-0.1 0, 0.0 3,-0.0 0.198 43.9 -63.4 -85.0-151.3 5.1 10.3 2.2 12 12 A S > - 0 0 78 1,-0.1 4,-1.4 2,-0.0 3,-0.5 -0.463 44.3-109.1 -94.8 170.1 5.6 6.9 4.0 13 13 A A H >> S+ 0 0 41 1,-0.3 3,-1.1 2,-0.2 4,-0.8 0.998 119.5 43.3 -61.2 -66.4 7.1 3.7 2.5 14 14 A F H 3> S+ 0 0 50 1,-0.3 4,-1.3 2,-0.2 -1,-0.3 0.540 106.2 68.7 -57.4 -6.5 3.9 1.7 2.4 15 15 A F H 3> S+ 0 0 83 -3,-0.5 4,-1.7 2,-0.2 5,-0.3 0.915 93.1 53.2 -78.9 -44.9 2.3 4.9 1.1 16 16 A L H << S+ 0 0 41 -4,-1.4 4,-0.3 -3,-1.1 -2,-0.2 0.746 113.2 48.5 -58.7 -18.3 4.1 4.8 -2.2 17 17 A F H X S+ 0 0 1 -4,-0.8 4,-2.9 -5,-0.2 -1,-0.3 0.772 101.9 61.6 -90.1 -34.1 2.6 1.3 -2.1 18 18 A C H X S+ 0 0 5 -4,-1.3 4,-1.8 1,-0.2 3,-0.2 0.994 99.4 53.3 -55.4 -64.7 -0.9 2.4 -1.2 19 19 A S H < S+ 0 0 78 -4,-1.7 -1,-0.2 1,-0.3 -2,-0.1 0.778 113.0 48.4 -40.6 -31.6 -1.3 4.5 -4.4 20 20 A E H 4 S+ 0 0 91 -5,-0.3 4,-0.4 -4,-0.3 -1,-0.3 0.948 125.1 26.0 -77.0 -51.0 -0.3 1.3 -6.2 21 21 A Y H X S+ 0 0 80 -4,-2.9 4,-0.7 -3,-0.2 5,-0.2 0.170 106.2 82.8 -97.6 18.7 -2.7 -1.0 -4.3 22 22 A R H X S+ 0 0 107 -4,-1.8 4,-1.4 -5,-0.2 5,-0.2 0.834 92.2 42.4 -90.2 -34.2 -5.2 1.7 -3.5 23 23 A P H > S+ 0 0 75 0, 0.0 4,-1.6 0, 0.0 6,-0.2 0.810 108.6 60.5 -81.4 -30.4 -7.2 1.7 -6.8 24 24 A K H > S+ 0 0 133 -4,-0.4 4,-1.8 2,-0.2 -2,-0.1 0.982 118.3 26.8 -60.3 -57.4 -7.3 -2.1 -7.1 25 25 A I H X S+ 0 0 26 -4,-0.7 4,-1.3 2,-0.2 3,-0.2 0.987 125.5 47.2 -70.1 -58.2 -9.1 -2.6 -3.9 26 26 A K H < S+ 0 0 78 -4,-1.4 -1,-0.2 -5,-0.2 -2,-0.2 0.834 109.0 60.9 -52.3 -29.3 -10.9 0.7 -3.8 27 27 A G H < S+ 0 0 48 -4,-1.6 -1,-0.2 1,-0.3 -2,-0.2 0.981 111.1 35.0 -61.4 -55.9 -11.7 -0.0 -7.4 28 28 A E H < S+ 0 0 157 -4,-1.8 -1,-0.3 1,-0.3 -2,-0.2 0.534 127.8 46.1 -74.8 -4.3 -13.6 -3.1 -6.5 29 29 A H S >< S- 0 0 90 -4,-1.3 2,-2.8 -6,-0.2 3,-0.7 -0.535 70.4-174.8-137.8 69.2 -14.7 -1.2 -3.4 30 30 A P T 3 S+ 0 0 115 0, 0.0 -3,-0.1 0, 0.0 -4,-0.1 -0.354 79.8 39.7 -66.0 74.6 -15.8 2.3 -4.4 31 31 A G T 3 S+ 0 0 64 -2,-2.8 2,-0.1 -5,-0.1 -4,-0.0 0.427 73.6 162.8 151.4 41.6 -16.4 3.4 -0.8 32 32 A L < - 0 0 30 -3,-0.7 2,-0.3 -6,-0.1 -6,-0.0 -0.444 37.2-118.5 -81.0 157.9 -13.7 2.1 1.6 33 33 A S > - 0 0 81 -2,-0.1 4,-2.8 1,-0.1 5,-0.3 -0.716 26.4-112.2 -93.7 145.2 -13.1 3.6 5.0 34 34 A I H > S+ 0 0 143 -2,-0.3 4,-1.9 1,-0.2 5,-0.2 0.833 121.8 54.1 -44.6 -32.1 -9.7 5.2 5.7 35 35 A G H > S+ 0 0 38 2,-0.2 4,-2.7 1,-0.2 -1,-0.2 0.975 110.0 43.4 -68.5 -51.8 -9.3 2.3 8.1 36 36 A D H > S+ 0 0 61 2,-0.2 4,-3.3 -3,-0.2 5,-0.4 0.915 113.5 52.3 -60.2 -44.8 -10.0 -0.4 5.5 37 37 A V H X S+ 0 0 8 -4,-2.8 4,-2.2 1,-0.2 5,-0.3 0.986 116.9 36.3 -55.8 -61.8 -7.9 1.3 2.9 38 38 A A H X S+ 0 0 38 -4,-1.9 4,-1.9 -5,-0.3 -1,-0.2 0.814 119.5 51.3 -63.6 -30.1 -4.9 1.6 5.1 39 39 A K H X S+ 0 0 143 -4,-2.7 4,-2.6 -5,-0.2 -2,-0.2 0.973 109.5 47.6 -72.4 -52.8 -5.6 -1.8 6.8 40 40 A K H X S+ 0 0 67 -4,-3.3 4,-2.7 1,-0.3 5,-0.2 0.917 118.3 43.1 -52.1 -43.6 -6.0 -3.8 3.6 41 41 A L H X S+ 0 0 0 -4,-2.2 4,-3.0 -5,-0.4 5,-0.3 0.875 110.7 54.9 -70.1 -36.0 -2.8 -2.1 2.4 42 42 A G H X S+ 0 0 17 -4,-1.9 4,-1.6 -5,-0.3 -2,-0.2 0.812 110.7 48.0 -66.0 -27.6 -1.3 -2.7 5.7 43 43 A E H X S+ 0 0 112 -4,-2.6 4,-2.0 2,-0.2 -2,-0.2 0.950 115.4 40.6 -77.4 -52.9 -2.1 -6.3 5.3 44 44 A M H X S+ 0 0 57 -4,-2.7 4,-2.6 2,-0.2 -2,-0.2 0.954 117.4 49.8 -61.1 -48.4 -0.8 -6.8 1.8 45 45 A W H >< S+ 0 0 34 -4,-3.0 3,-0.5 1,-0.3 -1,-0.2 0.969 109.2 50.6 -53.5 -56.2 2.3 -4.6 2.6 46 46 A N H 3< S+ 0 0 117 -4,-1.6 -1,-0.3 -5,-0.3 -2,-0.2 0.879 115.9 44.1 -49.6 -38.0 2.9 -6.6 5.7 47 47 A N H 3< S+ 0 0 115 -4,-2.0 -1,-0.3 -5,-0.1 -2,-0.3 0.765 87.4 108.6 -79.7 -25.7 2.7 -9.7 3.5 48 48 A T S << S- 0 0 16 -4,-2.6 5,-0.1 -3,-0.5 -3,-0.0 -0.324 84.1-106.4 -55.8 120.9 4.8 -8.2 0.7 49 49 A A >> - 0 0 60 1,-0.1 4,-0.9 -2,-0.1 3,-0.9 -0.077 22.0-121.4 -47.2 145.9 8.1 -10.1 0.7 50 50 A A H >> S+ 0 0 68 1,-0.3 3,-1.3 2,-0.2 4,-0.9 0.924 115.2 55.7 -58.4 -44.1 10.9 -8.0 2.1 51 51 A D H 34 S+ 0 0 126 1,-0.3 -1,-0.3 2,-0.2 -2,-0.1 0.764 107.5 51.5 -60.4 -22.3 12.8 -8.4 -1.1 52 52 A D H <4 S+ 0 0 72 -3,-0.9 4,-0.4 1,-0.2 -1,-0.3 0.639 100.2 61.7 -88.3 -16.6 9.8 -6.9 -2.8 53 53 A K H S+ 0 0 75 0, 0.0 4,-2.6 0, 0.0 -1,-0.2 0.895 113.7 43.8 -46.5 -44.0 11.8 -0.8 -4.7 56 56 A Y H > S+ 0 0 40 -4,-0.4 4,-2.3 -3,-0.3 5,-0.2 0.958 117.2 41.4 -69.8 -51.5 9.7 1.2 -2.3 57 57 A E H X S+ 0 0 101 -4,-2.6 4,-1.6 1,-0.2 -1,-0.2 0.862 118.3 50.9 -64.8 -31.5 12.2 1.7 0.5 58 58 A K H X S+ 0 0 116 -4,-3.5 4,-2.0 -5,-0.4 -2,-0.2 0.923 107.3 50.9 -70.7 -46.1 14.7 2.4 -2.1 59 59 A K H X S+ 0 0 137 -4,-2.6 4,-1.8 -5,-0.4 3,-0.4 0.961 112.6 46.2 -57.7 -51.4 12.7 4.9 -4.0 60 60 A A H X S+ 0 0 26 -4,-2.3 4,-1.3 1,-0.2 -1,-0.2 0.877 110.5 54.9 -59.6 -36.2 12.0 6.9 -0.9 61 61 A A H X S+ 0 0 31 -4,-1.6 4,-1.5 -5,-0.2 -1,-0.2 0.837 104.8 54.3 -67.8 -31.5 15.7 6.6 0.0 62 62 A K H X S+ 0 0 127 -4,-2.0 4,-1.2 -3,-0.4 3,-0.4 0.986 113.1 38.7 -66.5 -57.5 16.7 8.1 -3.3 63 63 A L H X S+ 0 0 52 -4,-1.8 4,-2.4 1,-0.2 -1,-0.2 0.711 107.7 68.5 -66.6 -18.0 14.7 11.2 -3.0 64 64 A K H X S+ 0 0 104 -4,-1.3 4,-1.7 -5,-0.3 5,-0.4 0.946 96.8 51.2 -66.6 -45.3 15.5 11.4 0.7 65 65 A E H < S+ 0 0 139 -4,-1.5 4,-0.4 -3,-0.4 -1,-0.2 0.919 112.3 47.2 -56.6 -43.0 19.1 12.2 0.0 66 66 A K H X S+ 0 0 124 -4,-1.2 4,-0.5 2,-0.2 -1,-0.2 0.901 113.9 49.5 -65.7 -40.9 18.0 15.0 -2.3 67 67 A Y H >X S+ 0 0 31 -4,-2.4 3,-2.1 1,-0.2 4,-1.6 0.993 111.3 42.3 -61.1 -77.3 15.5 16.3 0.2 68 68 A E H 3X S+ 0 0 116 -4,-1.7 4,-0.9 1,-0.3 -1,-0.2 0.606 95.6 89.3 -48.6 -7.5 17.6 16.5 3.4 69 69 A K H 34 S+ 0 0 156 -4,-0.4 -1,-0.3 -5,-0.4 -2,-0.2 0.917 110.5 6.3 -59.2 -43.2 20.2 17.9 1.0 70 70 A D H XX S+ 0 0 107 -3,-2.1 3,-1.6 -4,-0.5 4,-0.8 0.662 116.0 76.2-112.4 -26.5 18.9 21.5 1.5 71 71 A I H >< S+ 0 0 13 -4,-1.6 3,-0.6 1,-0.3 -3,-0.2 0.808 76.7 84.8 -56.3 -27.4 16.3 21.1 4.2 72 72 A A T 3< S+ 0 0 62 -4,-0.9 -1,-0.3 1,-0.3 -2,-0.1 0.889 91.6 45.1 -41.3 -47.6 19.3 20.8 6.6 73 73 A A T <4 S+ 0 0 89 -3,-1.6 -1,-0.3 -4,-0.1 -2,-0.2 0.866 116.0 57.0 -66.9 -33.4 19.4 24.6 6.7 74 74 A Y S << S- 0 0 67 -4,-0.8 -3,-0.1 -3,-0.6 2,-0.0 0.420 120.0 -8.5 -71.7-143.5 15.6 24.5 7.2 75 75 A R S S+ 0 0 140 1,-0.0 2,-0.3 0, 0.0 -1,-0.3 -0.312 95.4 119.3 -54.9 124.7 14.0 22.6 10.0 76 76 A A 0 0 65 1,-0.2 -4,-0.1 -3,-0.2 -3,-0.0 -0.947 360.0 360.0-168.1-172.1 16.7 20.6 11.6 77 77 A K 0 0 266 -2,-0.3 -1,-0.2 -5,-0.0 0, 0.0 0.067 360.0 360.0 -58.9 360.0 18.7 19.9 14.8