==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=31-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER APOPTOSIS 11-JUL-06 2HM2 . COMPND 2 MOLECULE: PYRIN-ONLY PROTEIN 1; . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR A.NATARAJAN,R.GHOSE,J.M.HILL . 89 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 6037.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 66 74.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 2 2.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 14 15.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 48 53.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 2 2.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 Q M 0 0 196 0, 0.0 5,-0.1 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 -64.4 14.1 7.6 9.7 2 2 Q G - 0 0 18 1,-0.1 4,-0.3 3,-0.1 5,-0.0 0.725 360.0-178.4 17.7 101.0 11.8 6.1 7.0 3 3 Q T S > S+ 0 0 83 2,-0.2 4,-2.8 3,-0.2 5,-0.1 0.857 84.6 36.6 -88.5 -39.4 9.8 9.2 5.7 4 4 Q K H > S+ 0 0 34 2,-0.2 4,-4.3 1,-0.2 5,-0.2 0.919 116.4 53.1 -77.3 -43.1 7.7 7.3 3.2 5 5 Q R H > S+ 0 0 107 1,-0.2 4,-1.8 2,-0.2 -1,-0.2 0.824 114.6 45.2 -58.5 -29.1 7.5 4.3 5.5 6 6 Q E H > S+ 0 0 85 -4,-0.3 4,-2.8 2,-0.2 -2,-0.2 0.934 115.4 43.4 -79.0 -49.8 6.3 6.9 8.0 7 7 Q A H X S+ 0 0 29 -4,-2.8 4,-0.9 2,-0.2 -2,-0.2 0.875 115.3 52.5 -63.0 -37.0 3.9 8.7 5.7 8 8 Q I H >X S+ 0 0 2 -4,-4.3 4,-3.0 2,-0.2 3,-1.6 0.994 113.7 39.3 -62.4 -63.2 2.7 5.3 4.4 9 9 Q L H 3X S+ 0 0 12 -4,-1.8 4,-2.5 1,-0.3 5,-0.2 0.871 108.2 63.2 -55.5 -39.4 1.9 3.8 7.9 10 10 Q K H 3< S+ 0 0 134 -4,-2.8 -1,-0.3 1,-0.2 -2,-0.2 0.825 115.4 34.3 -55.7 -28.6 0.5 7.2 9.0 11 11 Q V H XX S+ 0 0 30 -3,-1.6 3,-1.6 -4,-0.9 4,-0.6 0.847 113.2 55.0 -93.2 -43.0 -2.1 6.6 6.3 12 12 Q L H >< S+ 0 0 0 -4,-3.0 3,-0.8 1,-0.3 -3,-0.2 0.826 102.8 61.2 -61.3 -28.4 -2.5 2.9 6.3 13 13 Q E T 3< S+ 0 0 112 -4,-2.5 -1,-0.3 -5,-0.3 -2,-0.2 0.712 98.2 56.6 -70.4 -20.5 -3.3 3.2 10.0 14 14 Q N T <4 S+ 0 0 120 -3,-1.6 2,-0.5 -5,-0.2 -1,-0.2 0.604 81.3 106.4 -87.2 -9.7 -6.3 5.4 9.1 15 15 Q L S << S- 0 0 8 -3,-0.8 5,-0.1 -4,-0.6 -3,-0.0 -0.564 76.2-127.5 -71.7 117.3 -7.7 2.7 6.9 16 16 Q T >> - 0 0 73 -2,-0.5 4,-2.5 1,-0.1 3,-2.4 -0.290 32.3 -92.1 -65.8 150.8 -10.6 1.2 8.9 17 17 Q P H 3> S+ 0 0 113 0, 0.0 4,-1.8 0, 0.0 5,-0.1 0.741 130.6 51.2 -32.2 -37.3 -10.7 -2.6 9.5 18 18 Q E H 3> S+ 0 0 140 2,-0.2 4,-2.1 1,-0.2 5,-0.1 0.869 113.1 43.4 -73.8 -36.1 -12.7 -3.0 6.3 19 19 Q E H <> S+ 0 0 36 -3,-2.4 4,-3.8 2,-0.2 -1,-0.2 0.849 110.3 56.2 -77.1 -33.3 -10.2 -0.9 4.3 20 20 Q L H X S+ 0 0 43 -4,-2.5 4,-2.0 2,-0.2 -2,-0.2 0.941 110.2 45.5 -61.3 -46.8 -7.3 -2.7 5.9 21 21 Q K H X S+ 0 0 123 -4,-1.8 4,-1.7 -5,-0.3 -2,-0.2 0.955 117.1 43.2 -61.1 -51.0 -8.7 -6.0 4.7 22 22 Q K H X S+ 0 0 94 -4,-2.1 4,-4.9 1,-0.2 5,-0.3 0.902 107.5 62.0 -62.3 -40.3 -9.4 -4.7 1.2 23 23 Q F H X S+ 0 0 0 -4,-3.8 4,-0.9 1,-0.2 -1,-0.2 0.929 104.4 48.0 -49.4 -51.3 -6.1 -3.0 1.2 24 24 Q K H < S+ 0 0 15 -4,-2.0 4,-0.3 1,-0.2 3,-0.3 0.922 121.2 35.3 -56.1 -50.0 -4.3 -6.4 1.5 25 25 Q M H >< S+ 0 0 108 -4,-1.7 3,-2.2 1,-0.2 -2,-0.2 0.897 110.9 59.6 -73.8 -44.1 -6.4 -7.9 -1.2 26 26 Q K H >X S+ 0 0 50 -4,-4.9 4,-1.1 1,-0.3 3,-1.0 0.672 94.4 68.4 -62.9 -11.0 -6.7 -4.9 -3.5 27 27 Q L T 3< S+ 0 0 0 -4,-0.9 -1,-0.3 -5,-0.3 -2,-0.2 0.799 94.6 56.3 -74.6 -26.2 -2.9 -5.0 -3.6 28 28 Q G T <4 S+ 0 0 41 -3,-2.2 -1,-0.3 -4,-0.3 -2,-0.2 -0.036 103.1 57.5 -93.5 30.7 -3.3 -8.2 -5.6 29 29 Q T T <4 S+ 0 0 85 -3,-1.0 -2,-0.2 1,-0.1 -1,-0.2 0.631 79.6 86.1-123.4 -45.2 -5.5 -6.4 -8.2 30 30 Q V S < S- 0 0 42 -4,-1.1 -1,-0.1 1,-0.1 42,-0.0 -0.471 89.9-111.6 -63.2 115.7 -3.3 -3.6 -9.5 31 31 Q P - 0 0 114 0, 0.0 2,-0.3 0, 0.0 -1,-0.1 -0.090 33.8-143.2 -46.8 146.0 -1.2 -5.0 -12.4 32 32 Q L - 0 0 34 4,-0.2 6,-0.1 1,-0.1 4,-0.0 -0.846 16.9-101.2-117.0 153.6 2.6 -5.2 -11.5 33 33 Q R > - 0 0 152 -2,-0.3 3,-1.8 4,-0.1 -1,-0.1 -0.118 50.4 -83.2 -65.5 166.0 5.6 -4.6 -13.7 34 34 Q E T 3 S+ 0 0 183 1,-0.3 -2,-0.1 3,-0.0 0, 0.0 0.865 126.8 32.6 -32.9 -95.2 7.6 -7.5 -15.2 35 35 Q G T 3 S+ 0 0 77 2,-0.0 2,-0.3 0, 0.0 -1,-0.3 0.466 113.8 84.0 -50.9 1.8 10.1 -8.6 -12.4 36 36 Q F < + 0 0 52 -3,-1.8 2,-0.2 24,-0.0 -4,-0.2 -0.839 57.9 174.7-111.7 147.2 7.3 -7.6 -10.0 37 37 Q E - 0 0 115 -2,-0.3 -4,-0.1 1,-0.2 -2,-0.0 -0.760 34.8 -66.1-137.7-177.0 4.3 -9.7 -9.0 38 38 Q R - 0 0 163 -2,-0.2 -1,-0.2 1,-0.1 -10,-0.1 -0.085 63.0 -82.8 -67.8 171.2 1.3 -9.8 -6.7 39 39 Q I - 0 0 10 -15,-0.2 -1,-0.1 -14,-0.1 5,-0.1 -0.676 55.4-101.7 -80.2 122.3 1.5 -10.0 -2.9 40 40 Q P > - 0 0 67 0, 0.0 3,-0.5 0, 0.0 4,-0.3 0.025 29.2-121.1 -40.0 146.1 2.0 -13.6 -1.6 41 41 Q R G >> S+ 0 0 225 1,-0.2 3,-2.5 2,-0.2 4,-0.6 0.976 110.8 46.2 -57.7 -63.0 -1.1 -15.3 -0.3 42 42 Q G G 34 S+ 0 0 54 1,-0.3 -1,-0.2 2,-0.2 5,-0.1 0.598 103.8 68.4 -59.2 -10.2 0.0 -16.0 3.2 43 43 Q A G <> S+ 0 0 10 -3,-0.5 4,-0.7 3,-0.1 -1,-0.3 0.549 91.6 62.4 -85.6 -9.6 1.4 -12.5 3.4 44 44 Q L T <4 S+ 0 0 43 -3,-2.5 -2,-0.2 -4,-0.3 -1,-0.1 0.980 110.8 27.2 -79.3 -67.4 -2.1 -10.9 3.3 45 45 Q G T < S+ 0 0 74 -4,-0.6 -1,-0.2 1,-0.2 -2,-0.1 -0.025 123.0 54.7 -88.2 32.2 -3.9 -12.1 6.5 46 46 Q Q T 4 S+ 0 0 144 -3,-0.2 2,-0.3 1,-0.2 -1,-0.2 0.623 88.9 73.2-126.9 -43.9 -0.6 -12.5 8.4 47 47 Q L S < S- 0 0 27 -4,-0.7 -1,-0.2 -5,-0.1 2,-0.1 -0.626 70.2-139.4 -82.5 135.5 1.3 -9.2 8.2 48 48 Q D >> - 0 0 108 -2,-0.3 4,-5.1 1,-0.1 5,-0.5 -0.317 43.6 -85.2 -82.7 172.1 0.1 -6.2 10.3 49 49 Q I H >5S+ 0 0 36 1,-0.2 4,-1.1 3,-0.2 5,-0.1 0.792 134.2 51.1 -49.9 -25.2 0.1 -2.7 8.8 50 50 Q V H >5S+ 0 0 82 2,-0.2 4,-3.2 3,-0.2 -1,-0.2 0.982 119.9 29.3 -75.1 -61.5 3.7 -2.7 10.0 51 51 Q D H >5S+ 0 0 84 2,-0.2 4,-3.6 1,-0.2 5,-0.2 0.839 120.3 56.6 -68.1 -31.0 4.9 -5.9 8.5 52 52 Q L H X5S+ 0 0 0 -4,-5.1 4,-1.8 2,-0.2 -1,-0.2 0.895 112.1 43.2 -66.2 -36.2 2.4 -5.4 5.7 53 53 Q T H X S+ 0 0 83 1,-0.2 4,-1.4 3,-0.2 -1,-0.2 0.812 127.9 49.0 -57.0 -35.6 9.8 2.8 -0.6 63 63 Q D H > S+ 0 0 115 2,-0.2 4,-1.2 -6,-0.1 -1,-0.2 0.946 119.7 31.1 -74.8 -51.8 9.6 4.6 -4.0 64 64 Q Y H X S+ 0 0 74 -4,-0.7 4,-3.1 2,-0.2 -3,-0.2 0.827 116.0 61.2 -78.2 -29.5 7.5 2.3 -6.0 65 65 Q A H X S+ 0 0 0 -4,-2.6 4,-4.7 -5,-0.4 5,-0.3 0.988 102.4 49.4 -57.4 -59.4 5.6 1.1 -3.0 66 66 Q A H X S+ 0 0 4 -4,-1.4 4,-3.4 -5,-0.3 -1,-0.2 0.882 112.8 49.4 -45.5 -42.1 4.3 4.6 -2.3 67 67 Q E H X S+ 0 0 103 -4,-1.2 4,-1.9 2,-0.2 -1,-0.3 0.925 115.4 43.1 -64.1 -43.0 3.3 4.6 -6.0 68 68 Q L H X S+ 0 0 7 -4,-3.1 4,-1.4 2,-0.2 -2,-0.2 0.941 116.1 47.9 -66.9 -47.7 1.6 1.2 -5.5 69 69 Q V H X S+ 0 0 0 -4,-4.7 4,-2.2 2,-0.2 3,-0.4 0.939 109.4 54.2 -58.0 -49.9 0.1 2.2 -2.2 70 70 Q V H X S+ 0 0 4 -4,-3.4 4,-2.5 -5,-0.3 5,-0.2 0.952 106.8 48.5 -50.2 -62.4 -1.2 5.5 -3.6 71 71 Q A H X S+ 0 0 40 -4,-1.9 4,-1.4 1,-0.2 -1,-0.2 0.796 109.6 55.6 -52.5 -30.1 -3.1 3.9 -6.6 72 72 Q V H >X S+ 0 0 0 -4,-1.4 4,-1.3 -3,-0.4 3,-0.5 0.972 107.8 45.5 -68.7 -51.9 -4.7 1.4 -4.2 73 73 Q L H ><>S+ 0 0 0 -4,-2.2 5,-1.7 1,-0.3 3,-0.8 0.922 109.5 57.2 -55.5 -43.3 -6.2 4.1 -1.9 74 74 Q R H ><5S+ 0 0 91 -4,-2.5 3,-1.1 1,-0.3 -1,-0.3 0.873 103.0 54.5 -54.5 -38.6 -7.4 5.9 -4.9 75 75 Q D H <<5S+ 0 0 78 -4,-1.4 -1,-0.3 -3,-0.5 -2,-0.2 0.822 99.5 61.1 -65.6 -31.6 -9.2 2.8 -5.9 76 76 Q M T <<5S- 0 0 6 -4,-1.3 -1,-0.3 -3,-0.8 -2,-0.2 0.037 129.2 -96.6 -84.9 28.7 -11.0 2.8 -2.5 77 77 Q R T < 5S+ 0 0 177 -3,-1.1 2,-0.3 1,-0.1 -3,-0.2 0.826 92.0 126.8 60.2 34.6 -12.5 6.2 -3.4 78 78 Q M >< + 0 0 35 -5,-1.7 4,-1.6 -6,-0.2 -3,-0.1 -0.588 16.4 143.2-120.0 65.8 -9.6 7.9 -1.5 79 79 Q L H > S+ 0 0 119 -2,-0.3 4,-1.1 -5,-0.2 -1,-0.2 0.928 71.8 45.8 -70.6 -49.3 -8.4 10.3 -4.1 80 80 Q E H > S+ 0 0 158 2,-0.2 4,-1.1 -3,-0.2 -1,-0.1 0.913 113.1 50.4 -62.7 -44.6 -7.6 13.3 -1.8 81 81 Q E H >> S+ 0 0 61 1,-0.2 3,-1.7 2,-0.2 4,-1.1 0.967 107.1 51.2 -59.1 -56.2 -5.8 11.1 0.8 82 82 Q A H 3X S+ 0 0 0 -4,-1.6 4,-1.7 1,-0.3 3,-0.3 0.798 102.6 64.9 -52.7 -26.9 -3.5 9.3 -1.7 83 83 Q A H 3X S+ 0 0 41 -4,-1.1 4,-0.6 1,-0.2 -1,-0.3 0.892 95.5 55.4 -63.7 -38.0 -2.7 12.8 -2.9 84 84 Q R H << S+ 0 0 183 -3,-1.7 3,-0.4 -4,-1.1 -1,-0.2 0.812 104.2 56.0 -64.2 -28.0 -1.1 13.5 0.5 85 85 Q L H >< S+ 0 0 5 -4,-1.1 3,-3.2 -3,-0.3 -1,-0.2 0.926 98.2 59.0 -68.8 -44.9 1.0 10.5 -0.1 86 86 Q Q H 3< S+ 0 0 124 -4,-1.7 -1,-0.2 1,-0.3 -2,-0.2 0.702 99.9 60.3 -57.4 -17.7 2.4 11.9 -3.4 87 87 Q R T 3< S+ 0 0 182 -4,-0.6 2,-2.6 -3,-0.4 -1,-0.3 0.495 72.7 102.6 -87.9 -4.3 3.6 14.8 -1.2 88 88 Q A < 0 0 15 -3,-3.2 -1,-0.2 1,-0.3 -2,-0.1 -0.171 360.0 360.0 -73.5 48.3 5.8 12.3 0.8 89 89 Q A 0 0 147 -2,-2.6 -1,-0.3 -86,-0.0 -2,-0.1 0.025 360.0 360.0-154.0 360.0 8.8 13.6 -1.2