==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=4-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER DNA-BINDING PROTEIN 08-OCT-91 1HOM . COMPND 2 MOLECULE: ANTENNAPEDIA PROTEIN; . SOURCE 2 ORGANISM_SCIENTIFIC: DROSOPHILA MELANOGASTER; . AUTHOR Y.-Q.QIAN,M.BILLETER,G.OTTING,M.MULLER,W.J.GEHRING, . 68 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 6193.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 38 55.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 3 4.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 3 4.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 31 45.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 1 1.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 1 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 0 A M 0 0 196 0, 0.0 2,-0.3 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 146.8 -6.5 9.5 16.5 2 1 A R - 0 0 114 0, 0.0 2,-0.5 0, 0.0 0, 0.0 -0.980 360.0-137.4-127.8 144.4 -4.2 6.6 15.5 3 2 A K - 0 0 115 -2,-0.3 2,-0.1 3,-0.1 0, 0.0 -0.902 29.2-143.4 -89.1 129.7 -1.0 5.4 17.0 4 3 A R S S+ 0 0 169 -2,-0.5 2,-2.3 1,-0.1 3,-0.0 -0.198 75.6 43.0 -78.2-179.0 1.4 4.5 14.1 5 4 A G S S+ 0 0 75 1,-0.1 2,-1.0 2,-0.1 -1,-0.1 -0.401 93.0 86.3 78.5 -63.5 3.9 1.6 14.1 6 5 A R S S- 0 0 191 -2,-2.3 -3,-0.1 1,-0.2 -1,-0.1 -0.604 73.6-155.5 -68.8 103.1 1.4 -0.8 15.7 7 6 A Q + 0 0 135 -2,-1.0 -1,-0.2 1,-0.1 3,-0.1 0.920 23.2 169.8 -44.6 -68.6 -0.3 -1.9 12.4 8 7 A T + 0 0 114 1,-0.2 2,-0.3 -3,-0.1 -1,-0.1 0.893 27.0 152.9 43.3 49.6 -3.8 -3.0 13.8 9 8 A Y - 0 0 42 1,-0.0 -1,-0.2 2,-0.0 2,-0.1 -0.742 48.2-108.6 -99.4 150.1 -5.0 -3.4 10.2 10 9 A T > - 0 0 82 -2,-0.3 4,-2.8 1,-0.1 5,-0.3 -0.480 24.2-119.5 -73.6 151.1 -7.8 -5.7 9.1 11 10 A R H > S+ 0 0 145 1,-0.2 4,-2.5 2,-0.2 -1,-0.1 0.906 119.1 51.0 -52.6 -42.5 -6.9 -8.8 7.0 12 11 A Y H > S+ 0 0 149 2,-0.2 4,-2.8 1,-0.2 5,-0.2 0.938 107.8 50.1 -59.0 -54.0 -9.1 -7.2 4.3 13 12 A Q H > S+ 0 0 25 1,-0.2 4,-2.4 2,-0.2 -2,-0.2 0.951 115.6 42.5 -53.2 -51.2 -7.4 -3.8 4.5 14 13 A T H X S+ 0 0 25 -4,-2.8 4,-2.4 1,-0.2 -1,-0.2 0.885 110.8 58.6 -64.7 -36.3 -4.0 -5.4 4.1 15 14 A L H X S+ 0 0 69 -4,-2.5 4,-2.9 -5,-0.3 -2,-0.2 0.917 106.8 46.6 -56.2 -45.9 -5.6 -7.7 1.4 16 15 A E H X S+ 0 0 42 -4,-2.8 4,-3.1 1,-0.2 -2,-0.2 0.932 112.5 49.8 -69.3 -38.7 -6.5 -4.6 -0.7 17 16 A L H X S+ 0 0 0 -4,-2.4 4,-3.3 -5,-0.2 -1,-0.2 0.886 111.9 49.8 -56.3 -40.7 -3.0 -3.2 -0.1 18 17 A E H X S+ 0 0 56 -4,-2.4 4,-2.7 2,-0.2 -2,-0.2 0.925 112.7 44.8 -69.4 -42.4 -1.7 -6.6 -1.2 19 18 A K H X S+ 0 0 113 -4,-2.9 4,-2.0 2,-0.2 -2,-0.2 0.926 117.2 47.4 -64.1 -41.0 -4.0 -6.7 -4.4 20 19 A E H X S+ 0 0 23 -4,-3.1 4,-2.9 -5,-0.2 -2,-0.2 0.962 113.8 45.7 -64.0 -51.8 -2.9 -3.0 -5.1 21 20 A F H < S+ 0 0 13 -4,-3.3 -2,-0.2 1,-0.2 -1,-0.2 0.913 110.1 55.2 -57.0 -45.9 0.8 -3.7 -4.5 22 21 A H H < S+ 0 0 162 -4,-2.7 3,-0.3 1,-0.2 -1,-0.2 0.917 115.2 38.8 -57.4 -44.3 0.6 -6.9 -6.7 23 22 A F H < S+ 0 0 171 -4,-2.0 2,-0.3 1,-0.2 -1,-0.2 0.892 135.8 16.6 -67.4 -44.6 -0.8 -4.8 -9.5 24 23 A N < - 0 0 28 -4,-2.9 -1,-0.2 -5,-0.2 -2,-0.1 -0.842 57.4-173.0-142.9 100.2 1.4 -1.7 -8.9 25 24 A R S S+ 0 0 83 -2,-0.3 2,-0.3 -3,-0.3 -4,-0.1 0.367 81.9 51.4 -79.7 2.7 4.6 -2.0 -6.7 26 25 A Y S S- 0 0 149 -5,-0.1 2,-0.4 28,-0.0 0, 0.0 -0.982 80.5-145.6-131.5 140.6 5.0 1.8 -6.8 27 26 A L - 0 0 20 -2,-0.3 2,-0.1 4,-0.0 -2,-0.0 -0.874 7.0-143.8-107.8 142.3 2.2 4.2 -6.0 28 27 A T > - 0 0 83 -2,-0.4 4,-2.7 1,-0.1 5,-0.2 -0.419 30.6-104.5 -92.5 168.4 1.5 7.6 -7.6 29 28 A R H > S+ 0 0 177 2,-0.2 4,-2.0 1,-0.2 5,-0.1 0.965 123.0 43.7 -52.6 -57.6 0.2 10.8 -6.0 30 29 A R H > S+ 0 0 179 2,-0.2 4,-2.4 1,-0.2 3,-0.4 0.957 113.6 49.2 -56.2 -54.7 -3.3 10.2 -7.6 31 30 A R H > S+ 0 0 109 1,-0.3 4,-2.8 2,-0.2 -1,-0.2 0.895 109.1 53.1 -61.2 -39.6 -3.4 6.5 -6.8 32 31 A R H X S+ 0 0 75 -4,-2.7 4,-3.3 2,-0.2 -1,-0.3 0.883 107.3 52.4 -57.2 -42.1 -2.4 7.1 -3.2 33 32 A I H X S+ 0 0 51 -4,-2.0 4,-2.3 -3,-0.4 -2,-0.2 0.975 113.5 43.6 -59.2 -49.3 -5.3 9.6 -2.9 34 33 A E H X S+ 0 0 110 -4,-2.4 4,-3.1 1,-0.2 -2,-0.2 0.905 117.2 47.2 -56.1 -41.1 -7.7 6.9 -4.3 35 34 A I H X S+ 0 0 4 -4,-2.8 4,-2.7 -5,-0.2 6,-0.5 0.924 109.7 51.2 -72.8 -46.6 -6.0 4.3 -2.0 36 35 A A H <>S+ 0 0 13 -4,-3.3 5,-1.5 2,-0.2 4,-0.5 0.932 116.6 41.9 -52.9 -50.5 -6.1 6.5 1.2 37 36 A H H ><5S+ 0 0 142 -4,-2.3 3,-1.6 -5,-0.3 -2,-0.2 0.974 112.4 54.8 -62.0 -56.1 -9.8 7.1 0.5 38 37 A A H 3<5S+ 0 0 64 -4,-3.1 -2,-0.2 1,-0.3 -3,-0.2 0.879 123.7 23.5 -46.3 -58.5 -10.6 3.5 -0.5 39 38 A L T 3<5S- 0 0 10 -4,-2.7 -1,-0.3 -5,-0.1 -2,-0.2 0.311 106.7-118.6 -90.2 7.6 -9.2 1.8 2.7 40 39 A C T < 5S+ 0 0 112 -3,-1.6 -3,-0.2 -4,-0.5 2,-0.2 0.844 73.4 133.6 46.0 41.4 -9.6 5.0 4.8 41 40 A L < - 0 0 9 -5,-1.5 2,-0.3 -6,-0.5 -1,-0.2 -0.487 56.0-115.0-100.5 175.1 -5.8 5.0 5.3 42 41 A T > - 0 0 68 -2,-0.2 4,-2.6 -3,-0.1 3,-0.3 -0.883 20.8-117.5-115.2 151.8 -3.4 7.9 5.0 43 42 A E H > S+ 0 0 98 -2,-0.3 4,-2.9 1,-0.3 5,-0.1 0.810 114.0 58.0 -56.8 -36.1 -0.6 8.3 2.4 44 43 A R H > S+ 0 0 147 2,-0.2 4,-2.2 1,-0.2 -1,-0.3 0.949 110.7 40.1 -60.2 -52.1 2.0 8.3 5.2 45 44 A Q H > S+ 0 0 25 -3,-0.3 4,-2.9 2,-0.2 -2,-0.2 0.875 114.0 54.3 -72.7 -29.3 0.9 4.9 6.5 46 45 A I H X S+ 0 0 0 -4,-2.6 4,-3.3 2,-0.2 5,-0.3 0.936 106.7 52.4 -63.6 -45.7 0.5 3.6 3.0 47 46 A K H X S+ 0 0 129 -4,-2.9 4,-3.2 1,-0.2 -2,-0.2 0.937 111.3 47.5 -52.4 -50.4 4.1 4.7 2.3 48 47 A I H X S+ 0 0 67 -4,-2.2 4,-3.0 2,-0.2 -2,-0.2 0.948 115.2 43.3 -57.5 -52.3 5.1 2.7 5.4 49 48 A W H X S+ 0 0 30 -4,-2.9 4,-2.8 2,-0.2 -2,-0.2 0.933 118.5 44.6 -62.7 -44.5 3.1 -0.5 4.4 50 49 A F H X S+ 0 0 14 -4,-3.3 4,-2.1 2,-0.2 5,-0.2 0.918 112.6 52.3 -63.9 -44.1 4.3 -0.2 0.7 51 50 A Q H X S+ 0 0 78 -4,-3.2 4,-2.1 -5,-0.3 3,-0.2 0.938 113.0 45.0 -56.0 -48.4 7.9 0.5 1.9 52 51 A N H < S+ 0 0 90 -4,-3.0 -2,-0.2 1,-0.2 -1,-0.2 0.934 110.8 53.9 -58.2 -47.0 7.7 -2.6 4.1 53 52 A R H < S+ 0 0 88 -4,-2.8 -1,-0.2 1,-0.2 -2,-0.2 0.798 113.7 41.5 -64.5 -30.8 6.1 -4.6 1.2 54 53 A R H >X S+ 0 0 95 -4,-2.1 3,-2.0 -3,-0.2 4,-1.9 0.687 91.6 92.9 -93.7 -22.2 9.0 -3.7 -1.2 55 54 A M T 3< S+ 0 0 102 -4,-2.1 3,-0.1 1,-0.3 0, 0.0 -0.485 92.2 32.5 -56.2 142.3 11.8 -4.2 1.4 56 55 A K T 34 S+ 0 0 129 1,-0.2 -1,-0.3 -2,-0.1 -2,-0.1 0.325 123.0 54.3 74.6 -3.1 12.8 -7.9 0.8 57 56 A W T X> S+ 0 0 104 -3,-2.0 4,-3.2 3,-0.1 3,-2.4 0.572 113.6 32.2-106.1 -73.9 11.9 -7.4 -2.9 58 57 A K T 3< S+ 0 0 76 -4,-1.9 -3,-0.1 1,-0.3 -4,-0.1 0.295 129.3 42.0 -75.5 16.8 14.0 -4.4 -4.0 59 58 A K T 34 S+ 0 0 150 -5,-0.3 -1,-0.3 3,-0.0 -4,-0.1 0.318 133.1 13.9-136.4 12.3 16.8 -5.3 -1.6 60 59 A E T <4 S+ 0 0 105 -3,-2.4 -2,-0.2 0, 0.0 -3,-0.1 0.426 81.1 116.5-147.5 -23.3 16.9 -9.1 -2.0 61 60 A N S < S- 0 0 94 -4,-3.2 -3,-0.1 1,-0.1 -4,-0.0 0.672 104.0 -22.6 -43.7 -44.8 15.0 -10.2 -5.1 62 61 A K S S+ 0 0 183 -5,-0.2 3,-0.1 2,-0.1 -1,-0.1 0.460 88.1 140.9-121.0 -83.5 18.1 -11.6 -7.0 63 62 A T - 0 0 76 1,-0.1 2,-0.1 2,-0.0 3,-0.0 0.831 52.3-128.5 37.2 86.5 21.3 -10.0 -5.7 64 63 A K - 0 0 144 1,-0.1 -1,-0.1 2,-0.0 -2,-0.1 -0.406 25.8-139.7 -44.1 121.1 24.3 -12.4 -5.4 65 64 A G S S+ 0 0 60 -3,-0.1 -1,-0.1 1,-0.1 -2,-0.0 0.990 80.9 41.3 -59.4 -70.5 25.3 -11.7 -1.8 66 65 A E S S- 0 0 159 2,-0.1 2,-0.5 1,-0.1 -1,-0.1 -0.673 92.8-115.2 -86.9 129.6 29.1 -11.7 -2.0 67 66 A P 0 0 129 0, 0.0 -1,-0.1 0, 0.0 -2,-0.1 -0.548 360.0 360.0 -69.4 116.2 30.7 -9.9 -5.0 68 67 A G 0 0 109 -2,-0.5 -2,-0.1 -4,-0.0 -3,-0.1 -0.092 360.0 360.0 173.1 360.0 32.5 -12.6 -7.0