==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=20-JUL-2011 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER PROTEIN BINDING 13-JUL-06 2HO2 . COMPND 2 MOLECULE: AMYLOID BETA A4 PROTEIN-BINDING FAMILY B MEMBER 1 . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR M.MEIYAPPAN,G.BIRRANE,J.A.LADIAS . 43 2 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 3436.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 13 30.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 10 23.3 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 1 2.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 1 2.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 1 2.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 2 4.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 1 2.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 253 A S 0 0 166 0, 0.0 4,-0.1 0, 0.0 7,-0.0 0.000 360.0 360.0 360.0 6.5 1.8 7.3 -9.2 2 254 A D + 0 0 81 2,-0.1 3,-0.0 3,-0.0 30,-0.0 0.310 360.0 69.7 -88.4 6.4 -1.6 6.2 -7.8 3 255 A L S S- 0 0 19 4,-0.2 30,-0.2 1,-0.1 3,-0.1 -0.793 98.3 -81.6-118.5 162.8 -2.5 9.9 -7.1 4 256 A P > - 0 0 39 0, 0.0 3,-2.1 0, 0.0 -1,-0.1 -0.224 68.4 -71.6 -62.2 158.3 -3.2 12.8 -9.3 5 257 A A T 3 S+ 0 0 96 1,-0.2 3,-0.1 -4,-0.1 -3,-0.0 -0.136 120.1 22.6 -51.1 135.4 -0.3 14.6 -10.8 6 258 A G T 3 S+ 0 0 31 1,-0.2 15,-2.9 -3,-0.1 2,-0.3 0.247 97.0 112.0 93.9 -14.1 1.6 16.6 -8.3 7 259 A W E < -A 20 0A 47 -3,-2.1 2,-0.4 13,-0.2 -1,-0.2 -0.746 39.1-177.7-100.2 144.0 0.6 14.8 -5.1 8 260 A M E -A 19 0A 111 11,-2.5 11,-2.7 -2,-0.3 2,-0.4 -0.978 26.5-121.2-134.2 148.6 2.6 12.6 -2.8 9 261 A R E -A 18 0A 101 -2,-0.4 2,-0.4 9,-0.2 9,-0.2 -0.732 26.3-165.5 -84.8 130.3 1.7 10.7 0.2 10 262 A V E -A 17 0A 19 7,-3.1 7,-2.7 -2,-0.4 2,-0.4 -0.967 8.0-147.0-117.3 129.9 3.5 11.6 3.5 11 263 A Q E +A 16 0A 162 -2,-0.4 2,-0.3 5,-0.2 5,-0.2 -0.776 23.4 166.3 -94.1 130.7 3.6 9.4 6.6 12 264 A D - 0 0 59 3,-2.7 3,-0.4 -2,-0.4 -2,-0.0 -0.807 54.0 -84.7-127.8-170.8 3.7 10.9 10.1 13 265 A T S S+ 0 0 148 -2,-0.3 3,-0.1 1,-0.2 -1,-0.0 0.831 126.5 43.0 -65.0 -29.8 3.1 9.4 13.5 14 266 A S S S- 0 0 105 1,-0.3 2,-0.3 -3,-0.0 -1,-0.2 0.690 124.8 -74.3 -92.8 -18.5 -0.7 9.9 13.4 15 267 A G - 0 0 26 -3,-0.4 -3,-2.7 -5,-0.0 2,-0.4 -0.987 62.3 -40.3 157.2-163.0 -1.2 8.7 9.9 16 268 A T E +A 11 0A 51 -2,-0.3 -5,-0.2 -5,-0.2 2,-0.2 -0.808 47.3 174.5-100.1 133.4 -0.8 9.5 6.3 17 269 A Y E -A 10 0A 11 -7,-2.7 -7,-3.1 -2,-0.4 2,-0.4 -0.720 25.7-111.3-126.6-176.7 -1.4 12.8 4.7 18 270 A Y E -AB 9 27A 27 9,-2.7 9,-2.2 -2,-0.2 2,-0.4 -0.943 16.7-161.6-127.5 139.1 -1.0 14.3 1.2 19 271 A W E -AB 8 26A 59 -11,-2.7 -11,-2.5 -2,-0.4 2,-0.9 -0.977 10.4-150.7-123.0 123.6 1.3 17.0 -0.2 20 272 A H E >>> -AB 7 25A 38 5,-2.9 4,-2.6 -2,-0.4 3,-0.7 -0.855 12.8-158.1 -95.0 107.5 0.7 18.8 -3.4 21 273 A I T 345S+ 0 0 72 -15,-2.9 -1,-0.2 -2,-0.9 -14,-0.1 0.881 83.1 55.6 -58.4 -43.6 4.2 19.7 -4.6 22 274 A P T 345S+ 0 0 94 0, 0.0 -1,-0.2 0, 0.0 -15,-0.1 0.827 124.4 21.8 -64.1 -28.4 3.3 22.6 -6.9 23 275 A T T <45S- 0 0 91 -3,-0.7 -2,-0.2 -17,-0.1 3,-0.1 0.648 96.4-121.7-107.2 -23.9 1.5 24.6 -4.3 24 276 A G T <5 + 0 0 34 -4,-2.6 -3,-0.2 1,-0.3 2,-0.1 0.514 57.8 155.4 84.2 5.7 2.8 23.3 -0.9 25 277 A T E < -B 20 0A 65 -5,-0.6 -5,-2.9 -6,-0.1 2,-0.4 -0.412 23.2-168.1 -63.5 140.0 -0.7 22.4 0.1 26 278 A T E +B 19 0A 26 -7,-0.2 2,-0.3 -2,-0.1 -7,-0.2 -0.975 12.4 163.4-126.7 148.6 -1.1 19.6 2.6 27 279 A Q E -B 18 0A 48 -9,-2.2 -9,-2.7 -2,-0.4 -2,-0.0 -0.995 41.4-136.2-158.6 155.3 -4.3 17.9 3.6 28 280 A W S S+ 0 0 94 -2,-0.3 -1,-0.1 -11,-0.2 -12,-0.1 0.761 82.1 88.3 -81.5 -30.1 -5.6 14.8 5.3 29 281 A E S S- 0 0 127 1,-0.1 -11,-0.1 -11,-0.1 -2,-0.1 -0.537 90.2-107.5 -73.5 134.4 -8.3 14.0 2.6 30 282 A P - 0 0 90 0, 0.0 3,-0.1 0, 0.0 -1,-0.1 -0.361 22.9-138.1 -58.9 137.9 -7.1 11.8 -0.2 31 283 A P - 0 0 32 0, 0.0 2,-0.2 0, 0.0 -2,-0.1 0.505 46.0-106.5 -82.8 -3.3 -6.8 14.0 -3.3 32 284 A G 0 0 35 1,-0.1 0, 0.0 -28,-0.1 0, 0.0 -0.632 360.0 360.0 112.2-166.4 -8.4 11.4 -5.7 33 285 A R 0 0 229 -2,-0.2 -1,-0.1 -30,-0.2 -28,-0.1 0.731 360.0 360.0-124.2 360.0 -6.9 9.1 -8.4 34 !* 0 0 0 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 360.0 0.0 0.0 0.0 35 1 B P 0 0 170 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 163.9 19.8 18.8 2.0 36 2 B P - 0 0 120 0, 0.0 0, 0.0 0, 0.0 0, 0.0 -0.329 360.0-100.5 -63.7 147.5 16.3 19.6 0.8 37 3 B P - 0 0 115 0, 0.0 0, 0.0 0, 0.0 0, 0.0 -0.249 39.3 -91.2 -71.2 161.0 13.8 20.3 3.7 38 4 B P - 0 0 114 0, 0.0 0, 0.0 0, 0.0 0, 0.0 -0.270 58.7 -84.8 -56.9 151.6 11.2 17.8 5.1 39 5 B P - 0 0 52 0, 0.0 -13,-0.0 0, 0.0 -18,-0.0 -0.135 62.0 -84.0 -50.5 157.3 7.6 17.9 3.3 40 6 B P - 0 0 37 0, 0.0 -16,-0.0 0, 0.0 -15,-0.0 -0.329 53.7 -98.2 -62.7 156.8 5.4 20.6 4.8 41 7 B P - 0 0 98 0, 0.0 3,-0.1 0, 0.0 -15,-0.1 -0.270 39.5-105.3 -70.2 163.0 3.5 19.6 7.9 42 8 B P - 0 0 27 0, 0.0 -15,-0.1 0, 0.0 -23,-0.0 -0.366 44.7 -81.5 -81.0 165.8 -0.1 18.5 7.8 43 9 B P 0 0 51 0, 0.0 -16,-0.1 0, 0.0 0, 0.0 -0.178 360.0 360.0 -60.7 161.0 -3.1 20.6 8.9 44 10 B L 0 0 219 -3,-0.1 0, 0.0 0, 0.0 0, 0.0 -0.713 360.0 360.0 -99.7 360.0 -4.2 20.9 12.5