==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=21-JAN-2010 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER PROTEIN BINDING 02-JUN-09 3HON . COMPND 2 MOLECULE: COLLAGEN ALPHA-1(XVIII) CHAIN; . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR S.P.BOUDKO,H.P.BACHINGER . 55 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 4541.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 31 56.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 5 9.1 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 10 18.2 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 1 1.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 1 1.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 6 10.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 5 9.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 6 10.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 -1 A G 0 0 135 0, 0.0 2,-0.3 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 147.4 44.8 52.9 35.9 2 0 A S + 0 0 122 2,-0.0 2,-0.2 23,-0.0 23,-0.0 -0.979 360.0 161.7-165.2 155.6 45.2 50.1 38.4 3 1 A S - 0 0 62 -2,-0.3 2,-0.3 22,-0.0 22,-0.2 -0.636 14.6-150.9-151.0-150.7 47.8 47.9 40.2 4 2 A G - 0 0 25 20,-0.3 22,-1.3 -2,-0.2 2,-0.4 -0.884 30.7 -75.6-170.6-161.4 48.3 45.7 43.1 5 3 A V E -a 26 0A 85 -2,-0.3 2,-0.6 20,-0.2 22,-0.2 -0.984 34.6-147.7-123.2 131.2 50.8 44.3 45.7 6 4 A R E -a 27 0A 96 20,-2.1 22,-2.5 -2,-0.4 2,-0.2 -0.893 11.6-143.2-108.4 120.4 53.4 41.7 44.8 7 5 A L E +a 28 0A 128 -2,-0.6 2,-0.3 20,-0.2 22,-0.2 -0.514 20.7 177.2 -80.9 142.2 54.5 39.1 47.4 8 6 A W E -a 29 0A 20 20,-1.8 22,-1.0 -2,-0.2 23,-0.3 -0.950 28.9-147.9-140.7 158.2 58.1 37.8 47.7 9 7 A A S S+ 0 0 68 -2,-0.3 2,-0.3 1,-0.3 22,-0.3 0.714 81.5 14.4 -99.2 -27.2 60.0 35.4 50.0 10 8 A T S > S- 0 0 49 21,-0.1 4,-1.4 20,-0.1 -1,-0.3 -0.995 73.5-111.8-149.1 152.7 63.5 37.0 49.9 11 9 A R T 4 S+ 0 0 88 -2,-0.3 4,-0.2 1,-0.2 18,-0.0 0.354 113.4 71.3 -65.9 11.7 65.2 40.3 48.9 12 10 A Q T >> S+ 0 0 149 2,-0.1 3,-1.5 3,-0.1 4,-1.4 0.916 97.6 38.4 -85.3 -75.2 66.7 38.0 46.2 13 11 A A H >> S+ 0 0 39 1,-0.3 4,-1.0 2,-0.2 3,-0.9 0.890 115.7 53.6 -42.2 -56.9 63.7 37.2 44.0 14 12 A M H 3X S+ 0 0 0 -4,-1.4 4,-0.8 1,-0.2 -1,-0.3 0.749 106.4 54.3 -55.3 -28.3 62.4 40.8 44.2 15 13 A L H <4 S+ 0 0 68 -3,-1.5 -1,-0.2 -5,-0.2 -2,-0.2 0.820 113.0 39.7 -78.0 -31.6 65.8 42.2 43.1 16 14 A G H << S+ 0 0 51 -4,-1.4 -2,-0.2 -3,-0.9 -1,-0.2 0.458 125.1 40.8 -94.3 -1.6 66.0 40.1 39.9 17 15 A Q H >X S+ 0 0 72 -4,-1.0 4,-0.9 -5,-0.3 3,-0.8 0.360 81.2 91.7-125.0 0.9 62.3 40.6 39.3 18 16 A V T 3< S+ 0 0 12 -4,-0.8 24,-0.1 1,-0.2 -3,-0.1 0.586 78.0 78.0 -71.2 -6.0 61.7 44.3 40.2 19 17 A H T 34 S+ 0 0 125 -5,-0.1 -1,-0.2 -4,-0.1 -2,-0.1 0.899 99.5 33.3 -68.6 -44.3 62.4 44.7 36.5 20 18 A E T <4 S+ 0 0 119 -3,-0.8 -2,-0.2 2,-0.1 -1,-0.1 0.986 87.6 98.5 -74.9 -74.4 58.9 43.5 35.4 21 19 A V S < S- 0 0 2 -4,-0.9 4,-0.2 1,-0.1 3,-0.1 0.190 76.9-131.3 -21.1 103.5 56.6 44.7 38.1 22 20 A P - 0 0 73 0, 0.0 3,-0.2 0, 0.0 16,-0.2 -0.091 35.1 -63.3 -62.5 163.1 55.2 47.9 36.4 23 21 A E S S+ 0 0 112 1,-0.2 16,-0.2 17,-0.1 3,-0.1 0.066 116.4 27.4 -47.8 153.5 55.0 51.4 38.1 24 22 A G S S+ 0 0 36 14,-2.8 2,-0.5 1,-0.2 -20,-0.3 0.888 84.6 132.0 59.1 41.7 52.8 51.9 41.1 25 23 A W - 0 0 69 13,-0.4 13,-1.6 -3,-0.2 -20,-0.2 -0.948 55.1-131.3-127.4 112.1 52.9 48.4 42.3 26 24 A L E -aB 5 37A 53 -22,-1.3 -20,-2.1 -2,-0.5 2,-0.4 -0.227 20.6-149.9 -56.4 150.9 53.7 47.8 46.0 27 25 A I E -aB 6 36A 0 9,-3.7 9,-2.1 -22,-0.2 2,-0.6 -0.957 7.3-162.0-131.2 112.7 56.4 45.2 46.5 28 26 A F E -aB 7 35A 63 -22,-2.5 -20,-1.8 -2,-0.4 2,-1.2 -0.836 10.6-169.9-102.8 113.9 56.4 43.0 49.6 29 27 A V E >>> -aB 8 34A 0 5,-2.7 3,-2.8 -2,-0.6 4,-1.3 -0.568 15.1-170.4 -97.2 70.9 59.6 41.2 50.7 30 28 A A T 345S+ 0 0 42 -2,-1.2 -1,-0.2 -22,-1.0 -21,-0.2 0.681 78.4 50.9 -27.2 -53.2 58.0 39.1 53.4 31 29 A E T 345S+ 0 0 118 -22,-0.3 -1,-0.3 -23,-0.3 -21,-0.1 0.752 118.4 39.8 -66.8 -24.2 61.1 37.6 55.0 32 30 A Q T <45S- 0 0 68 -3,-2.8 -1,-0.2 2,-0.1 -2,-0.2 0.558 103.2-132.7 -97.4 -15.2 62.6 41.1 55.3 33 31 A E T <5 + 0 0 97 -4,-1.3 2,-0.4 1,-0.2 -3,-0.2 0.920 56.8 146.3 60.0 45.8 59.2 42.7 56.3 34 32 A E E < -B 29 0A 35 -5,-0.7 -5,-2.7 13,-0.0 2,-0.5 -0.956 34.5-167.0-119.4 131.4 59.9 45.4 53.7 35 33 A L E +B 28 0A 46 11,-0.5 11,-1.7 -2,-0.4 2,-0.3 -0.977 15.3 166.9-120.4 119.7 57.3 47.2 51.6 36 34 A Y E -BC 27 45A 3 -9,-2.1 -9,-3.7 -2,-0.5 2,-0.4 -0.864 27.7-135.0-123.8 159.9 58.4 49.4 48.7 37 35 A V E -BC 26 44A 37 7,-1.5 7,-2.3 -2,-0.3 2,-0.5 -0.972 26.4-114.8-119.3 133.9 56.4 50.8 45.9 38 36 A R E - C 0 43A 39 -13,-1.6 -14,-2.8 -2,-0.4 -13,-0.4 -0.556 42.6-173.1 -71.7 114.2 57.6 50.6 42.3 39 37 A V E > - C 0 42A 41 3,-1.7 3,-1.4 -2,-0.5 -1,-0.0 -0.529 40.7 -69.9-107.0 174.5 58.4 54.1 41.0 40 38 A Q T 3 S+ 0 0 162 1,-0.3 -17,-0.1 -2,-0.2 3,-0.1 0.707 123.2 2.2 -23.8 -59.3 59.4 55.7 37.7 41 39 A N T 3 S- 0 0 163 1,-0.1 2,-0.3 -18,-0.0 -1,-0.3 -0.405 133.6 -16.4-140.5 65.9 62.9 54.3 37.6 42 40 A G E < S-C 39 0A 29 -3,-1.4 -3,-1.7 -24,-0.1 2,-0.3 -0.825 90.6 -60.5 131.1-170.9 63.6 52.0 40.5 43 41 A F E -C 38 0A 62 -2,-0.3 2,-0.5 -5,-0.2 -5,-0.2 -0.831 26.7-150.2-116.3 153.3 61.8 51.6 43.8 44 42 A R E -C 37 0A 168 -7,-2.3 -7,-1.5 -2,-0.3 2,-0.2 -0.905 24.2-136.6-119.3 100.3 61.0 53.8 46.8 45 43 A K E -C 36 0A 115 -2,-0.5 -9,-0.3 -9,-0.3 2,-0.2 -0.348 17.6-131.2 -59.2 120.0 60.7 51.9 50.1 46 44 A V - 0 0 51 -11,-1.7 -11,-0.5 -2,-0.2 2,-0.4 -0.490 22.0-114.7 -76.6 141.6 57.8 52.9 52.3 47 45 A Q + 0 0 186 -2,-0.2 2,-0.3 -13,-0.1 -1,-0.1 -0.594 37.3 175.9 -79.3 127.6 58.4 53.7 56.0 48 46 A L - 0 0 104 -2,-0.4 3,-0.1 1,-0.0 2,-0.1 -0.874 25.7-120.7-126.4 161.3 56.8 51.4 58.5 49 47 A E - 0 0 189 -2,-0.3 3,-0.1 1,-0.2 2,-0.1 -0.256 49.1 -69.8 -90.0-177.9 57.1 51.3 62.3 50 48 A A S S- 0 0 93 1,-0.1 -1,-0.2 -2,-0.1 0, 0.0 -0.393 70.5 -77.4 -71.9 156.0 58.4 48.4 64.4 51 49 A R - 0 0 201 -3,-0.1 -1,-0.1 1,-0.1 -3,-0.0 -0.126 35.3-143.9 -62.0 146.1 56.1 45.3 64.5 52 50 A T - 0 0 115 -3,-0.1 -1,-0.1 1,-0.0 -3,-0.0 -0.913 33.0-103.4-107.0 130.8 53.0 44.9 66.6 53 51 A P - 0 0 117 0, 0.0 -1,-0.0 0, 0.0 0, 0.0 -0.157 26.2-158.7 -55.0 148.9 52.3 41.5 68.1 54 52 A L 0 0 171 1,-0.0 -2,-0.0 0, 0.0 0, 0.0 0.901 360.0 360.0 -94.6 -53.0 49.6 39.3 66.5 55 53 A P 0 0 168 0, 0.0 -1,-0.0 0, 0.0 0, 0.0 0.747 360.0 360.0 -26.9 360.0 48.4 36.7 69.0