==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=14-DEC-2012 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER DNA BINDING PROTEIN/DNA 23-OCT-12 4HP1 . COMPND 2 MOLECULE: DNA (5'-D(*GP*CP*CP*AP*CP*(5CM)P*GP*GP*TP*GP*GP*C . SOURCE 2 SYNTHETIC: YES; . AUTHOR X.CHAO,W.TEMPEL,C.BIAN,C.BOUNTRA,C.H.ARROWSMITH,A.M.EDWARDS, . 51 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 4430.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 13 25.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 6 11.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 7 13.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 59 C N 0 0 201 0, 0.0 2,-0.2 0, 0.0 3,-0.1 0.000 360.0 360.0 360.0 178.2 23.1 -18.2 11.9 2 60 C K - 0 0 73 1,-0.2 0, 0.0 0, 0.0 0, 0.0 -0.610 360.0 -69.1-114.5 173.9 20.1 -15.9 12.2 3 61 C K - 0 0 167 -2,-0.2 2,-0.2 1,-0.1 -1,-0.2 -0.244 56.8-109.2 -61.2 150.4 19.4 -12.5 13.5 4 62 C R - 0 0 107 -3,-0.1 2,-0.3 39,-0.1 -1,-0.1 -0.561 27.7-142.4 -82.9 149.3 19.5 -12.2 17.3 5 63 C K - 0 0 165 -2,-0.2 -1,-0.0 1,-0.1 0, 0.0 -0.769 29.1 -89.4-107.5 155.1 16.3 -11.7 19.4 6 64 C R - 0 0 138 -2,-0.3 -1,-0.1 1,-0.1 33,-0.0 -0.154 32.5-128.7 -52.2 157.7 15.8 -9.5 22.5 7 65 C C - 0 0 45 1,-0.0 -1,-0.1 0, 0.0 -2,-0.0 0.818 21.5-145.6 -89.0 -32.9 16.5 -11.3 25.9 8 66 C G S S+ 0 0 22 1,-0.0 -2,-0.1 2,-0.0 -1,-0.0 0.346 81.3 68.8 91.8 -5.0 13.2 -10.4 27.6 9 67 C V + 0 0 117 4,-0.0 2,-0.1 5,-0.0 -1,-0.0 0.452 69.1 93.1-131.9 -7.2 14.7 -10.1 31.1 10 68 C C S > S- 0 0 19 1,-0.1 4,-1.8 0, 0.0 -2,-0.0 -0.464 89.0-101.7 -84.4 164.7 17.0 -7.1 31.2 11 69 C V H > S+ 0 0 116 1,-0.2 4,-0.7 2,-0.2 3,-0.2 0.914 121.5 48.9 -58.8 -44.9 15.5 -3.8 32.5 12 70 C P H >4 S+ 0 0 12 0, 0.0 3,-1.1 0, 0.0 -1,-0.2 0.916 109.3 52.5 -60.9 -41.4 15.2 -2.3 28.9 13 71 C C H 34 S+ 0 0 7 1,-0.3 -2,-0.2 26,-0.1 27,-0.1 0.832 107.5 53.6 -60.6 -33.6 13.4 -5.5 27.6 14 72 C L H 3< S+ 0 0 114 -4,-1.8 -1,-0.3 -3,-0.2 2,-0.1 0.621 80.7 115.3 -78.9 -12.7 11.0 -5.2 30.5 15 73 C R << - 0 0 82 -3,-1.1 4,-0.0 -4,-0.7 -4,-0.0 -0.404 52.1-159.5 -61.9 127.4 10.0 -1.6 29.7 16 74 C K + 0 0 119 -2,-0.1 -1,-0.1 1,-0.1 22,-0.0 0.884 68.6 31.8 -74.3 -42.1 6.4 -1.4 28.7 17 75 C E S S- 0 0 137 1,-0.1 -1,-0.1 2,-0.0 -2,-0.0 -0.808 86.8 -98.1-120.7 153.5 6.4 2.0 26.7 18 76 C P - 0 0 75 0, 0.0 -1,-0.1 0, 0.0 -2,-0.1 -0.326 34.8-123.6 -61.4 156.2 8.9 4.0 24.6 19 77 C C - 0 0 37 1,-0.1 -2,-0.0 -4,-0.0 0, 0.0 0.755 27.3-146.7 -80.1 -25.6 10.7 6.8 26.5 20 78 C G S S+ 0 0 55 1,-0.1 -1,-0.1 2,-0.0 15,-0.0 0.383 79.9 64.5 82.4 -2.7 9.5 9.5 24.1 21 79 C A + 0 0 77 4,-0.0 -1,-0.1 5,-0.0 14,-0.0 0.507 69.5 98.8-132.9 -12.1 12.6 11.7 24.5 22 80 C C S > S- 0 0 23 1,-0.1 4,-2.5 4,-0.0 5,-0.2 -0.243 88.3 -98.5 -72.7 172.3 15.7 9.8 23.1 23 81 C Y H > S+ 0 0 159 1,-0.2 4,-1.4 2,-0.2 8,-0.1 0.873 124.4 48.9 -60.2 -37.5 16.9 10.6 19.5 24 82 C N H 4 S+ 0 0 20 2,-0.2 7,-0.3 1,-0.2 -1,-0.2 0.838 111.1 48.5 -75.3 -33.8 15.1 7.5 18.1 25 83 C C H >4 S+ 0 0 24 1,-0.2 3,-1.5 2,-0.2 -2,-0.2 0.916 111.0 50.6 -67.3 -45.1 11.8 8.3 19.8 26 84 C V H 3< S+ 0 0 101 -4,-2.5 3,-0.2 1,-0.3 -2,-0.2 0.842 116.1 42.9 -63.0 -32.9 11.9 12.0 18.6 27 85 C N T >X S+ 0 0 46 -4,-1.4 4,-3.1 -5,-0.2 3,-1.1 -0.115 75.2 137.5-102.3 34.6 12.5 10.6 15.1 28 86 C R T <4 + 0 0 72 -3,-1.5 -1,-0.2 1,-0.2 -2,-0.1 0.882 68.3 54.5 -46.3 -51.1 9.9 7.8 15.3 29 87 C S T 34 S+ 0 0 130 -3,-0.2 -1,-0.2 1,-0.2 -2,-0.1 0.823 122.0 28.8 -54.6 -34.7 8.6 8.4 11.7 30 88 C T T <4 S+ 0 0 107 -3,-1.1 -2,-0.2 -6,-0.1 -1,-0.2 0.799 99.2 95.3 -95.7 -39.4 12.1 8.1 10.2 31 89 C S < - 0 0 29 -4,-3.1 -7,-0.0 -7,-0.3 0, 0.0 -0.262 42.5-172.0 -72.3 141.8 14.0 5.8 12.5 32 90 C H + 0 0 192 2,-0.1 2,-0.4 -2,-0.0 -1,-0.1 -0.010 66.1 99.6-106.6 23.7 14.5 2.0 12.1 33 91 C Q S S- 0 0 125 -9,-0.1 3,-0.1 -5,-0.1 -2,-0.1 -0.913 75.0-116.2-118.1 140.8 16.0 2.0 15.6 34 92 C I - 0 0 65 -2,-0.4 5,-0.2 1,-0.2 -10,-0.2 -0.282 47.9 -78.7 -70.4 149.3 14.5 1.0 18.9 35 93 C C >> - 0 0 8 1,-0.2 3,-1.5 -11,-0.1 4,-1.2 -0.212 42.3-125.7 -41.9 133.6 14.0 3.4 21.7 36 94 C K T 34 S+ 0 0 111 1,-0.3 -1,-0.2 2,-0.2 3,-0.1 0.804 110.9 52.7 -61.9 -28.2 17.4 3.8 23.4 37 95 C M T 34 S+ 0 0 99 1,-0.2 -1,-0.3 -25,-0.1 -22,-0.2 0.584 110.7 47.3 -83.4 -11.2 15.9 2.8 26.8 38 96 C R T <4 S+ 0 0 76 -3,-1.5 -2,-0.2 2,-0.1 -1,-0.2 0.566 80.5 121.5-101.6 -12.0 14.3 -0.3 25.3 39 97 C K S < S- 0 0 67 -4,-1.2 2,-0.2 -5,-0.2 -26,-0.1 -0.309 72.0-111.8 -55.2 125.3 17.5 -1.6 23.6 40 98 C C >> - 0 0 4 -28,-0.2 4,-1.0 1,-0.1 3,-0.8 -0.435 11.8-137.4 -66.9 133.3 18.3 -5.0 24.9 41 99 C E T 34 S+ 0 0 87 1,-0.3 3,-0.3 2,-0.2 4,-0.2 0.819 106.3 53.6 -58.1 -35.2 21.5 -5.3 27.0 42 100 C Q T >4 S+ 0 0 90 1,-0.2 3,-0.8 2,-0.1 -1,-0.3 0.811 105.6 53.1 -70.0 -30.9 22.4 -8.4 25.3 43 101 C L T <4 S+ 0 0 40 -3,-0.8 -1,-0.2 1,-0.2 -2,-0.2 0.628 91.1 73.9 -84.1 -12.5 22.1 -6.8 21.8 44 102 C K T 3< S+ 0 0 110 -4,-1.0 2,-0.5 -3,-0.3 -1,-0.2 0.581 81.7 87.3 -72.6 -11.3 24.4 -4.0 22.7 45 103 C K S < S- 0 0 121 -3,-0.8 3,-0.1 -4,-0.2 -3,-0.0 -0.807 92.6-111.8 -87.9 129.2 27.2 -6.5 22.4 46 104 C K - 0 0 120 -2,-0.5 -2,-0.1 1,-0.1 -1,-0.1 -0.204 44.3 -89.1 -53.1 146.0 28.6 -6.9 18.9 47 105 C R - 0 0 64 1,-0.1 -1,-0.1 -4,-0.1 -4,-0.0 -0.377 26.8-132.7 -57.9 136.2 27.8 -10.3 17.3 48 106 C V S S+ 0 0 118 1,-0.2 -1,-0.1 -3,-0.1 -2,-0.1 0.864 97.5 12.3 -58.7 -38.0 30.4 -13.0 18.0 49 107 C V S S- 0 0 60 0, 0.0 -1,-0.2 0, 0.0 0, 0.0 -0.994 87.9-125.5-138.5 136.3 30.3 -13.8 14.2 50 108 C P 0 0 123 0, 0.0 -2,-0.0 0, 0.0 -4,-0.0 -0.103 360.0 360.0 -72.2 175.3 28.6 -11.6 11.5 51 109 C M 0 0 154 -4,-0.0 -48,-0.0 0, 0.0 0, 0.0 0.649 360.0 360.0 -99.0 360.0 25.9 -12.7 8.9