==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=14-DEC-2012 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER DNA BINDING PROTEIN/DNA 23-OCT-12 4HP3 . COMPND 2 MOLECULE: DNA (5'-D(*GP*CP*CP*AP*AP*CP*GP*TP*TP*GP*GP*C)-3' . SOURCE 2 SYNTHETIC: YES; . AUTHOR X.CHAO,W.TEMPEL,C.BIAN,C.BOUNTRA,C.H.ARROWSMITH,A.M.EDWARDS, . 51 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 4246.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 13 25.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 5 9.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 8 15.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 59 C N 0 0 179 0, 0.0 2,-0.1 0, 0.0 3,-0.1 0.000 360.0 360.0 360.0 169.0 -22.2 -2.0 9.0 2 60 C K - 0 0 64 1,-0.2 0, 0.0 49,-0.1 0, 0.0 -0.345 360.0 -47.8-109.3-168.5 -19.6 -4.8 9.6 3 61 C K - 0 0 164 -2,-0.1 -1,-0.2 1,-0.1 2,-0.1 -0.249 62.6-111.8 -67.6 145.7 -19.6 -8.0 11.6 4 62 C R - 0 0 105 -3,-0.1 2,-0.3 39,-0.1 -1,-0.1 -0.358 27.1-131.8 -73.6 164.0 -20.8 -7.8 15.2 5 63 C K - 0 0 179 1,-0.1 -1,-0.0 -2,-0.1 0, 0.0 -0.874 27.3 -91.5-118.8 149.7 -18.6 -8.2 18.1 6 64 C R - 0 0 142 -2,-0.3 -1,-0.1 1,-0.1 33,-0.0 -0.097 30.8-130.7 -50.2 152.5 -18.9 -10.4 21.2 7 65 C C - 0 0 44 1,-0.1 -1,-0.1 0, 0.0 -2,-0.0 0.779 21.5-147.5 -87.3 -29.0 -20.5 -8.7 24.1 8 66 C G S S+ 0 0 20 1,-0.1 -1,-0.1 2,-0.0 -2,-0.1 0.348 79.9 70.7 82.9 -3.9 -17.9 -9.6 26.7 9 67 C V S S+ 0 0 116 4,-0.0 2,-0.2 5,-0.0 -1,-0.1 0.391 70.0 91.4-130.3 1.0 -20.3 -9.9 29.6 10 68 C C S > S- 0 0 17 1,-0.1 4,-2.2 5,-0.0 5,-0.2 -0.549 89.3-101.8 -90.0 164.7 -22.6 -12.9 29.1 11 69 C V H > S+ 0 0 119 1,-0.2 4,-1.0 2,-0.2 3,-0.2 0.939 122.2 51.1 -55.4 -50.2 -21.5 -16.3 30.6 12 70 C P H >4 S+ 0 0 9 0, 0.0 3,-0.8 0, 0.0 -1,-0.2 0.903 110.8 49.9 -54.4 -39.8 -20.3 -17.7 27.3 13 71 C C H 34 S+ 0 0 10 1,-0.3 -2,-0.2 -3,-0.2 27,-0.1 0.859 108.9 51.3 -66.3 -38.2 -18.1 -14.5 26.8 14 72 C L H 3< S+ 0 0 124 -4,-2.2 -1,-0.3 -3,-0.2 -3,-0.1 0.570 83.2 117.9 -75.5 -9.7 -16.6 -14.7 30.2 15 73 C R << - 0 0 103 -4,-1.0 -5,-0.0 -3,-0.8 23,-0.0 -0.396 52.4-157.3 -61.7 133.0 -15.7 -18.4 29.6 16 74 C K + 0 0 103 -2,-0.1 -1,-0.1 1,-0.1 22,-0.0 0.823 67.3 27.0 -83.8 -36.5 -11.8 -18.9 29.9 17 75 C E S S- 0 0 78 1,-0.0 -1,-0.1 2,-0.0 2,-0.0 -0.902 85.7 -97.7-126.3 154.9 -11.3 -22.1 27.8 18 76 C P - 0 0 68 0, 0.0 -2,-0.0 0, 0.0 16,-0.0 -0.375 35.6-124.4 -62.3 154.5 -13.0 -24.0 25.0 19 77 C C - 0 0 35 1,-0.1 -2,-0.0 -2,-0.0 0, 0.0 0.770 26.2-146.9 -79.6 -28.4 -15.2 -26.9 26.3 20 78 C G S S+ 0 0 52 1,-0.1 -1,-0.1 2,-0.0 15,-0.0 0.367 79.5 68.6 85.7 -3.4 -13.5 -29.5 24.2 21 79 C A S S+ 0 0 84 4,-0.1 2,-0.1 5,-0.0 -1,-0.1 0.445 70.7 95.3-131.8 -4.2 -16.6 -31.7 23.7 22 80 C C S > S- 0 0 22 1,-0.1 4,-2.2 4,-0.0 5,-0.3 -0.370 89.2 -97.3 -85.9 170.0 -19.1 -29.8 21.4 23 81 C Y H > S+ 0 0 147 1,-0.2 4,-1.8 2,-0.2 8,-0.1 0.853 123.0 48.8 -54.3 -36.4 -19.3 -30.2 17.7 24 82 C N H 4 S+ 0 0 16 2,-0.2 -1,-0.2 1,-0.2 7,-0.2 0.841 109.1 50.0 -80.5 -36.6 -17.1 -27.1 17.0 25 83 C C H >4 S+ 0 0 20 1,-0.2 3,-1.0 2,-0.1 -2,-0.2 0.965 115.4 43.0 -60.2 -53.8 -14.3 -28.0 19.4 26 84 C V H 3< S+ 0 0 100 -4,-2.2 -2,-0.2 1,-0.3 3,-0.2 0.859 125.4 35.1 -62.7 -37.8 -14.0 -31.6 18.0 27 85 C N T 3X S+ 0 0 55 -4,-1.8 4,-1.7 -5,-0.3 3,-0.3 -0.372 71.9 149.2-111.2 51.5 -14.2 -30.4 14.4 28 86 C R H <> + 0 0 109 -3,-1.0 4,-1.3 1,-0.2 5,-0.2 0.882 69.2 53.7 -55.9 -37.2 -12.4 -27.0 14.7 29 87 C S H 4 S+ 0 0 113 -3,-0.2 -1,-0.2 1,-0.2 -2,-0.1 0.858 113.6 34.7 -68.3 -45.7 -11.1 -27.2 11.1 30 88 C T H 4 S+ 0 0 84 -3,-0.3 -1,-0.2 1,-0.1 -2,-0.2 0.776 117.0 50.8 -82.6 -30.5 -14.4 -27.7 9.0 31 89 C S H < S- 0 0 23 -4,-1.7 -2,-0.2 -7,-0.2 -3,-0.1 0.878 75.5-156.8 -77.9 -40.8 -16.9 -25.6 11.1 32 90 C H < + 0 0 161 -4,-1.3 2,-0.3 -5,-0.3 -3,-0.1 0.712 53.0 130.3 60.6 25.8 -15.0 -22.2 11.5 33 91 C Q - 0 0 102 -5,-0.2 -1,-0.2 -9,-0.1 -2,-0.1 -0.815 62.8-114.1-116.4 149.4 -17.2 -21.8 14.5 34 92 C I - 0 0 58 -2,-0.3 5,-0.2 1,-0.1 -10,-0.1 -0.422 55.4 -75.7 -69.5 151.1 -16.5 -20.8 18.1 35 93 C C >> - 0 0 0 1,-0.1 3,-1.8 -11,-0.1 4,-0.9 -0.162 41.6-125.2 -41.4 136.1 -17.1 -23.4 20.9 36 94 C K T 34 S+ 0 0 123 1,-0.3 -1,-0.1 2,-0.2 3,-0.1 0.742 113.0 54.4 -67.6 -22.1 -20.8 -23.6 21.5 37 95 C M T 34 S+ 0 0 96 1,-0.2 -1,-0.3 -25,-0.1 -22,-0.2 0.560 110.9 46.8 -84.9 -8.6 -20.2 -22.9 25.2 38 96 C R T <4 S+ 0 0 77 -3,-1.8 -2,-0.2 2,-0.1 2,-0.2 0.493 80.4 119.5-107.5 -10.0 -18.3 -19.7 24.2 39 97 C K S < S- 0 0 66 -4,-0.9 2,-0.2 -5,-0.2 -26,-0.1 -0.447 72.1-110.7 -66.5 130.5 -20.8 -18.3 21.7 40 98 C C >> - 0 0 3 -2,-0.2 4,-1.1 -28,-0.2 3,-0.9 -0.353 12.2-137.7 -67.2 128.9 -22.1 -14.9 22.8 41 99 C E T 34 S+ 0 0 84 1,-0.3 4,-0.3 2,-0.2 3,-0.2 0.801 105.3 53.3 -56.6 -30.7 -25.7 -14.8 23.8 42 100 C Q T >4 S+ 0 0 92 1,-0.2 3,-0.8 2,-0.2 -1,-0.3 0.807 105.5 52.9 -74.3 -30.5 -26.1 -11.5 21.9 43 101 C L T <4 S+ 0 0 39 -3,-0.9 -1,-0.2 1,-0.2 -2,-0.2 0.600 93.1 70.4 -85.5 -12.2 -24.6 -13.0 18.6 44 102 C K T 3< S+ 0 0 114 -4,-1.1 2,-0.3 -3,-0.2 -1,-0.2 0.680 85.7 85.3 -75.3 -15.7 -27.0 -15.9 18.6 45 103 C K S < S- 0 0 123 -3,-0.8 3,-0.1 -4,-0.3 2,-0.1 -0.647 92.9-109.4 -84.8 139.7 -29.7 -13.3 17.9 46 104 C K - 0 0 97 -2,-0.3 -1,-0.1 1,-0.1 -2,-0.1 -0.380 47.0 -81.6 -73.1 152.3 -30.0 -12.4 14.1 47 105 C R - 0 0 70 1,-0.1 -1,-0.1 -4,-0.1 -4,-0.0 -0.154 20.1-141.4 -62.2 141.1 -28.8 -9.0 12.9 48 106 C V S S+ 0 0 117 1,-0.2 -1,-0.1 -3,-0.1 -2,-0.1 0.846 95.8 15.5 -64.4 -34.7 -31.0 -5.9 13.2 49 107 C V S S- 0 0 55 0, 0.0 -1,-0.2 0, 0.0 -2,-0.0 -0.999 85.0-118.7-138.1 139.3 -29.6 -4.9 9.8 50 108 C P 0 0 115 0, 0.0 -2,-0.0 0, 0.0 0, 0.0 -0.065 360.0 360.0 -62.0 177.6 -27.8 -6.9 7.1 51 109 C M 0 0 150 -4,-0.0 -49,-0.1 0, 0.0 -48,-0.1 -0.487 360.0 360.0 -74.2 360.0 -24.2 -6.0 5.9