==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=4-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER TRANSPORT PROTEIN 14-DEC-00 1HQB . COMPND 2 MOLECULE: APO-D-ALANYL CARRIER PROTEIN; . SOURCE 2 ORGANISM_SCIENTIFIC: LACTOBACILLUS CASEI; . AUTHOR B.F.VOLKMAN,Q.ZHANG,D.V.DEBABOV,E.RIVERA,G.KRESHECK, . 80 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 5409.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 49 61.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 2 2.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 9 11.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 33 41.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 1 1.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 1 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 2 A A 0 0 125 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0-140.4 17.3 -0.0 6.2 2 3 A D > + 0 0 107 1,-0.2 4,-0.6 2,-0.1 3,-0.1 -0.121 360.0 177.1 -40.8 116.1 16.1 1.5 2.9 3 4 A E H > + 0 0 139 2,-0.2 4,-2.1 1,-0.1 5,-0.2 0.526 69.4 76.5-101.6 -11.9 13.9 4.3 4.1 4 5 A A H > S+ 0 0 84 2,-0.2 4,-1.0 1,-0.2 -1,-0.1 0.607 98.7 48.4 -73.1 -11.9 13.1 5.5 0.6 5 6 A I H > S+ 0 0 15 2,-0.2 4,-3.8 3,-0.2 5,-0.3 0.890 110.6 45.1 -91.3 -52.3 10.8 2.5 0.4 6 7 A K H X S+ 0 0 104 -4,-0.6 4,-1.5 2,-0.2 -2,-0.2 0.855 122.0 42.0 -59.6 -36.1 8.9 2.9 3.6 7 8 A N H X S+ 0 0 105 -4,-2.1 4,-4.5 2,-0.2 5,-0.3 0.964 116.7 45.1 -74.5 -56.3 8.6 6.6 2.8 8 9 A G H X S+ 0 0 18 -4,-1.0 4,-3.0 -5,-0.2 5,-0.2 0.908 113.5 51.4 -53.1 -47.4 7.8 6.2 -0.9 9 10 A V H X S+ 0 0 1 -4,-3.8 4,-0.9 2,-0.2 -1,-0.2 0.928 116.4 40.2 -56.0 -48.7 5.4 3.5 -0.1 10 11 A L H >X S+ 0 0 25 -4,-1.5 4,-2.8 -5,-0.3 3,-0.6 0.920 113.4 54.0 -66.1 -45.4 3.7 5.7 2.4 11 12 A D H 3X S+ 0 0 107 -4,-4.5 4,-1.7 1,-0.3 -2,-0.2 0.864 110.0 48.1 -56.2 -37.8 4.0 8.7 0.2 12 13 A I H 3X S+ 0 0 32 -4,-3.0 4,-1.3 -5,-0.3 -1,-0.3 0.714 110.4 54.7 -74.6 -21.7 2.3 6.7 -2.5 13 14 A L H S+ 0 0 17 -4,-2.8 4,-3.2 1,-0.3 5,-0.7 0.859 116.8 50.1 -56.5 -37.1 -1.3 9.3 1.1 15 16 A D H <5S+ 0 0 132 -4,-1.7 -1,-0.3 -5,-0.3 -2,-0.2 0.852 106.3 56.6 -69.3 -36.0 -1.2 10.1 -2.6 16 17 A L H <5S+ 0 0 41 -4,-1.3 -2,-0.2 1,-0.2 -1,-0.2 0.968 118.7 30.2 -58.8 -56.7 -3.4 7.1 -3.3 17 18 A T H <5S- 0 0 24 -4,-2.4 -2,-0.2 2,-0.2 -1,-0.2 0.886 102.7-133.9 -69.9 -40.7 -6.1 8.3 -0.9 18 19 A G T <5S+ 0 0 60 -4,-3.2 2,-0.3 1,-0.4 -3,-0.2 0.518 72.3 92.8 95.8 9.6 -5.3 11.9 -1.5 19 20 A S S > > S+ 0 0 84 -7,-0.1 4,-1.5 2,-0.1 3,-0.7 0.859 87.6 37.0 -89.0 -43.7 -4.9 10.4 6.9 22 23 A V T <4 S+ 0 0 0 -3,-0.6 -2,-0.1 1,-0.2 6,-0.1 0.698 100.5 78.4 -79.8 -21.4 -2.9 7.3 6.0 23 24 A K T 34 S+ 0 0 142 -4,-0.3 -1,-0.2 -10,-0.1 -2,-0.1 0.740 115.8 16.3 -57.9 -22.6 0.2 9.4 6.2 24 25 A K T <4 S+ 0 0 145 -3,-0.7 -2,-0.2 -4,-0.1 -3,-0.1 0.723 110.7 73.8-111.6 -75.2 -0.2 8.9 9.9 25 26 A N < - 0 0 79 -4,-1.5 3,-0.4 1,-0.2 -1,-0.1 -0.176 57.5-163.8 -46.8 129.5 -2.5 6.1 10.8 26 27 A L S S+ 0 0 73 1,-0.2 44,-0.6 43,-0.1 45,-0.2 0.024 87.4 44.5-106.1 23.5 -0.7 2.8 10.0 27 28 A D S S+ 0 0 106 42,-0.1 2,-1.1 43,-0.1 -1,-0.2 -0.034 70.5 142.6-155.5 34.0 -4.0 0.9 10.1 28 29 A L - 0 0 19 -3,-0.4 5,-0.1 -6,-0.1 -6,-0.0 -0.731 57.1-123.1 -86.8 99.5 -6.4 3.1 8.1 29 30 A N > - 0 0 38 -2,-1.1 4,-1.3 1,-0.2 6,-0.5 -0.183 16.7-157.0 -44.3 111.7 -8.5 0.6 6.2 30 31 A L T 4 S+ 0 0 1 37,-4.8 6,-2.3 1,-0.2 -1,-0.2 0.555 95.5 33.3 -71.1 -7.2 -7.9 1.7 2.6 31 32 A F T >4 S+ 0 0 78 36,-0.4 3,-1.1 4,-0.2 -1,-0.2 0.756 116.4 49.0-111.8 -50.8 -11.2 -0.1 1.9 32 33 A E T 34 S+ 0 0 165 1,-0.3 -2,-0.2 35,-0.1 -3,-0.1 0.638 114.0 52.3 -66.5 -13.9 -13.3 0.4 5.0 33 34 A T T 3< S- 0 0 55 -4,-1.3 -1,-0.3 -5,-0.1 -3,-0.1 0.582 105.8-130.9 -95.6 -14.9 -12.3 4.1 4.7 34 35 A G S < S+ 0 0 50 -3,-1.1 -3,-0.1 -5,-0.1 -4,-0.1 0.531 75.2 122.2 75.0 6.5 -13.4 4.3 1.1 35 36 A L S S+ 0 0 43 -6,-0.5 2,-0.3 2,-0.1 -4,-0.2 0.806 72.7 44.0 -67.9 -30.2 -10.1 5.9 0.4 36 37 A L + 0 0 10 -6,-2.3 -2,-0.1 1,-0.1 -19,-0.0 -0.771 54.1 170.2-114.4 160.2 -9.4 3.1 -2.1 37 38 A D - 0 0 142 -2,-0.3 -1,-0.1 0, 0.0 -2,-0.1 0.559 60.8 -82.1-130.0 -61.0 -11.7 1.5 -4.7 38 39 A S S > S+ 0 0 71 0, 0.0 4,-1.5 0, 0.0 3,-0.3 0.006 116.9 65.3-179.4 -53.2 -9.7 -0.8 -6.9 39 40 A M H > S+ 0 0 152 1,-0.2 4,-2.4 2,-0.2 5,-0.1 0.809 98.1 62.5 -59.2 -31.4 -7.9 1.1 -9.7 40 41 A G H > S+ 0 0 21 1,-0.2 4,-3.2 2,-0.2 5,-0.3 0.939 102.0 47.7 -59.4 -50.8 -5.9 2.7 -7.0 41 42 A T H > S+ 0 0 5 -3,-0.3 4,-2.0 1,-0.2 -1,-0.2 0.856 109.9 55.1 -58.8 -37.1 -4.3 -0.6 -5.9 42 43 A V H X S+ 0 0 70 -4,-1.5 4,-1.3 2,-0.2 -1,-0.2 0.943 112.4 41.6 -61.2 -50.0 -3.6 -1.3 -9.5 43 44 A Q H >X S+ 0 0 136 -4,-2.4 4,-1.6 2,-0.2 3,-1.2 0.968 111.5 53.6 -61.4 -56.7 -1.7 1.9 -9.9 44 45 A L H 3X S+ 0 0 2 -4,-3.2 4,-1.9 1,-0.3 -1,-0.2 0.846 106.5 56.0 -46.3 -38.2 0.1 1.7 -6.6 45 46 A L H 3X S+ 0 0 17 -4,-2.0 4,-1.0 -5,-0.3 -1,-0.3 0.881 101.7 55.3 -62.5 -39.4 1.1 -1.8 -7.8 46 47 A L H << S+ 0 0 102 -4,-1.3 -1,-0.2 -3,-1.2 -2,-0.2 0.838 113.2 42.0 -61.7 -33.7 2.6 -0.1 -10.9 47 48 A E H >X>S+ 0 0 75 -4,-1.6 4,-1.8 1,-0.2 3,-0.7 0.729 112.7 53.0 -83.7 -25.2 4.7 2.0 -8.6 48 49 A L H 3<5S+ 0 0 2 -4,-1.9 6,-4.4 -5,-0.3 -2,-0.2 0.541 108.8 51.8 -84.9 -9.0 5.4 -0.9 -6.3 49 50 A Q T 3<5S+ 0 0 102 -4,-1.0 -1,-0.2 4,-0.4 -2,-0.2 0.158 116.2 39.2-110.3 14.2 6.7 -2.8 -9.3 50 51 A S T <45S+ 0 0 87 -3,-0.7 -2,-0.2 -5,-0.1 -3,-0.1 0.637 125.5 27.0-124.0 -58.8 9.0 -0.0 -10.4 51 52 A Q T <5S+ 0 0 151 -4,-1.8 -3,-0.2 1,-0.1 -2,-0.1 0.744 146.7 18.0 -80.3 -25.9 10.6 1.5 -7.4 52 53 A F S + 0 0 74 2,-0.1 3,-0.6 3,-0.1 -16,-0.0 0.505 65.7 81.7-136.7 -45.5 -3.8 -9.0 -8.8 59 60 A S T 3 S- 0 0 121 1,-0.3 0, 0.0 0, 0.0 0, 0.0 0.786 132.3 -24.3 -36.1 -35.1 -6.2 -11.6 -10.2 60 61 A E T 3 S- 0 0 178 2,-0.0 -1,-0.3 3,-0.0 -2,-0.1 -0.102 83.3-178.9 178.4 66.9 -7.3 -11.7 -6.5 61 62 A F < - 0 0 40 -3,-0.6 2,-1.5 -4,-0.2 3,-0.1 0.005 47.4 -83.0 -66.5 178.4 -4.8 -10.6 -4.0 62 63 A D >> - 0 0 115 1,-0.2 3,-4.1 -5,-0.1 4,-1.5 -0.659 39.9-170.9 -88.9 82.8 -5.3 -10.6 -0.3 63 64 A R T 34 S+ 0 0 152 -2,-1.5 -1,-0.2 1,-0.3 5,-0.1 0.760 84.6 70.3 -43.0 -27.8 -7.1 -7.3 0.1 64 65 A K T 34 S+ 0 0 128 1,-0.2 3,-0.5 2,-0.2 4,-0.4 0.851 104.8 38.1 -59.7 -35.6 -6.6 -8.0 3.8 65 66 A E T <4 S+ 0 0 46 -3,-4.1 -1,-0.2 1,-0.2 -2,-0.2 0.725 121.5 44.5 -86.1 -25.5 -2.9 -7.3 3.2 66 67 A W S < S+ 0 0 7 -4,-1.5 -2,-0.2 1,-0.2 -1,-0.2 0.007 97.3 80.2-105.2 24.2 -3.6 -4.5 0.7 67 68 A D S S+ 0 0 31 -3,-0.5 -37,-4.8 -5,-0.3 -36,-0.4 0.761 94.8 38.8 -97.3 -34.6 -6.3 -3.1 3.1 68 69 A T S > S- 0 0 2 -4,-0.4 4,-1.1 -39,-0.2 -39,-0.1 -0.763 75.7-127.4-116.1 162.5 -3.9 -1.3 5.4 69 70 A P H > S+ 0 0 0 0, 0.0 4,-3.8 0, 0.0 5,-0.2 0.829 111.4 49.9 -75.1 -34.2 -0.7 0.7 4.9 70 71 A N H > S+ 0 0 69 -44,-0.6 4,-1.9 2,-0.2 5,-0.2 0.937 108.0 51.7 -68.5 -48.6 1.2 -1.4 7.4 71 72 A K H > S+ 0 0 87 1,-0.2 4,-1.2 2,-0.2 -1,-0.2 0.839 117.9 41.0 -56.1 -34.4 0.1 -4.7 5.9 72 73 A I H X S+ 0 0 0 -4,-1.1 4,-2.6 2,-0.2 5,-0.3 0.943 107.7 57.5 -77.9 -52.9 1.3 -3.2 2.6 73 74 A I H X S+ 0 0 11 -4,-3.8 4,-0.9 1,-0.3 -2,-0.2 0.777 113.1 45.3 -48.1 -27.7 4.5 -1.6 3.9 74 75 A A H X S+ 0 0 37 -4,-1.9 4,-2.3 2,-0.2 -1,-0.3 0.824 107.7 54.9 -84.5 -36.3 5.2 -5.2 5.1 75 76 A K H < S+ 0 0 57 -4,-1.2 -2,-0.2 -3,-0.3 -1,-0.2 0.767 109.5 49.6 -66.9 -25.9 4.2 -6.7 1.8 76 77 A V H >X S+ 0 0 0 -4,-2.6 4,-1.3 1,-0.2 3,-0.8 0.815 112.3 46.0 -80.5 -33.8 6.7 -4.3 0.2 77 78 A E H 3< S+ 0 0 103 -4,-0.9 -2,-0.2 -5,-0.3 -1,-0.2 0.766 108.8 56.2 -78.1 -27.7 9.4 -5.3 2.6 78 79 A Q T 3< S+ 0 0 153 -4,-2.3 -1,-0.2 1,-0.2 -2,-0.1 0.083 108.1 51.3 -90.9 22.4 8.6 -9.0 2.2 79 80 A A T <4 0 0 44 -3,-0.8 -2,-0.2 -5,-0.1 -1,-0.2 0.642 360.0 360.0-122.1 -44.1 9.2 -8.6 -1.6 80 81 A Q < 0 0 114 -4,-1.3 -26,-0.1 -26,-0.0 -27,-0.1 0.027 360.0 360.0 -46.9 360.0 12.6 -6.9 -1.8