==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=14-DEC-2012 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER HORMONE/DNA 26-OCT-12 4HQU . COMPND 2 MOLECULE: PLATELET-DERIVED GROWTH FACTOR SUBUNIT B; . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR D.R.DAVIES,T.E.EDWARDS,N.JANJIC,A.D.GELINAS,C.ZHANG,T.C.JARV . 95 1 4 4 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 7559.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 56 58.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 36 37.9 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 1 1.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 15 15.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 2 2.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 2 2.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 7 A I 0 0 144 0, 0.0 2,-0.7 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 148.0 -17.4 -39.5 -19.5 2 8 A A - 0 0 103 3,-0.0 3,-0.1 0, 0.0 0, 0.0 -0.904 360.0-150.9-108.0 102.7 -17.4 -35.7 -19.4 3 9 A E - 0 0 155 -2,-0.7 2,-0.2 1,-0.1 3,-0.0 -0.195 31.0 -87.0 -64.2 157.4 -20.9 -34.4 -18.7 4 10 A P - 0 0 99 0, 0.0 -1,-0.1 0, 0.0 2,-0.1 -0.520 46.5-111.5 -68.2 133.4 -22.1 -31.0 -20.0 5 11 A A - 0 0 106 -2,-0.2 2,-0.4 -3,-0.1 -3,-0.0 -0.408 32.2-150.2 -60.3 136.8 -21.3 -28.2 -17.6 6 12 A M - 0 0 166 -2,-0.1 -1,-0.0 -3,-0.0 -3,-0.0 -0.951 19.3-110.3-115.1 133.2 -24.5 -26.8 -16.0 7 13 A I - 0 0 120 -2,-0.4 2,-1.2 1,-0.1 0, 0.0 -0.293 22.4-123.9 -62.9 138.2 -24.8 -23.1 -15.0 8 14 A A - 0 0 53 39,-0.1 38,-2.7 3,-0.0 -1,-0.1 -0.779 40.1-141.0 -79.8 101.2 -24.9 -22.4 -11.2 9 15 A E - 0 0 48 -2,-1.2 2,-0.8 36,-0.2 35,-0.2 -0.185 19.9 -96.8 -64.1 153.8 -28.2 -20.4 -11.3 10 16 A a S S+ 0 0 29 36,-0.3 2,-0.3 35,-0.2 35,-0.2 -0.707 77.9 118.8 -71.4 107.7 -28.8 -17.3 -9.3 11 17 A K E -A 44 0A 114 33,-2.4 33,-2.5 -2,-0.8 2,-0.3 -0.955 68.1 -70.8-159.1 174.4 -30.7 -18.8 -6.3 12 18 A T E +A 43 0A 44 -2,-0.3 2,-0.3 31,-0.2 31,-0.2 -0.573 48.9 173.7 -77.1 135.7 -30.5 -19.3 -2.5 13 19 A R E -A 42 0A 71 29,-2.7 29,-2.9 -2,-0.3 2,-0.5 -0.937 38.9 -93.8-133.5 161.1 -27.9 -21.7 -1.2 14 20 A T E +A 41 0A 74 -2,-0.3 2,-0.2 27,-0.2 27,-0.2 -0.645 48.0 177.2 -79.3 121.4 -26.7 -22.6 2.3 15 21 A E E -A 40 0A 86 25,-3.4 25,-2.5 -2,-0.5 2,-0.6 -0.758 32.1-107.5-117.6 170.0 -23.7 -20.6 3.5 16 22 A V E -A 39 0A 114 -2,-0.2 2,-0.5 23,-0.2 23,-0.2 -0.875 29.4-162.4-100.6 122.3 -21.7 -20.4 6.7 17 23 A F E -A 38 0A 56 21,-3.4 21,-2.3 -2,-0.6 2,-0.4 -0.920 11.5-141.5-106.9 122.1 -22.3 -17.2 8.8 18 24 A E E -A 37 0A 149 -2,-0.5 2,-0.4 19,-0.2 19,-0.3 -0.679 23.9-119.8 -84.3 129.7 -19.7 -16.3 11.5 19 25 A I - 0 0 12 17,-2.9 2,-0.5 -2,-0.4 3,-0.1 -0.558 24.7-131.2 -75.9 123.3 -21.3 -14.9 14.6 20 26 A S > - 0 0 37 -2,-0.4 4,-1.0 1,-0.2 -1,-0.1 -0.620 16.9-167.7 -79.0 119.3 -20.0 -11.4 15.3 21 27 A R H > S+ 0 0 114 -2,-0.5 4,-2.6 1,-0.2 -1,-0.2 0.853 87.8 65.2 -68.9 -33.3 -18.8 -10.9 18.9 22 28 A R H 4 S+ 0 0 204 1,-0.2 -1,-0.2 2,-0.2 6,-0.1 0.854 101.7 46.2 -59.1 -39.6 -18.7 -7.1 18.1 23 29 A L H 4 S+ 0 0 108 1,-0.2 3,-0.3 2,-0.1 -1,-0.2 0.826 109.5 55.4 -74.8 -29.3 -22.5 -6.9 17.6 24 30 A I H < S- 0 0 32 -4,-1.0 2,-0.3 1,-0.3 -2,-0.2 0.940 135.8 -7.9 -62.3 -47.6 -23.1 -8.9 20.7 25 31 A D < + 0 0 32 -4,-2.6 -1,-0.3 1,-0.1 -2,-0.1 -0.812 57.3 173.9-155.6 112.5 -21.0 -6.4 22.7 26 32 A R S S+ 0 0 84 -3,-0.3 -3,-0.1 -2,-0.3 -4,-0.1 0.649 83.6 53.3 -85.8 -18.8 -19.0 -3.5 21.2 27 33 A T S S+ 0 0 119 1,-0.1 2,-0.3 -5,-0.1 -1,-0.1 0.522 108.0 43.3-101.0 -7.5 -18.1 -1.9 24.6 28 34 A N - 0 0 86 -6,-0.1 -1,-0.1 -3,-0.1 3,-0.1 -0.996 48.0-171.3-138.3 145.7 -16.6 -5.0 26.5 29 35 A A + 0 0 81 -2,-0.3 2,-2.3 1,-0.1 -1,-0.1 0.560 61.5 102.0-106.4 -13.6 -14.1 -7.7 25.4 30 36 A N + 0 0 65 40,-0.0 41,-2.9 41,-0.0 2,-0.3 -0.210 67.4 84.7 -75.9 48.4 -14.3 -9.9 28.5 31 37 A F E -B 70 0B 7 -2,-2.3 2,-0.3 39,-0.2 39,-0.2 -0.987 55.6-148.9-150.8 157.0 -16.7 -12.6 27.0 32 38 A L E -B 69 0B 103 37,-2.4 37,-2.6 -2,-0.3 2,-0.3 -0.907 15.9-156.6-122.2 152.4 -16.9 -15.8 24.9 33 39 A V E -B 68 0B 24 -2,-0.3 35,-0.2 35,-0.2 -12,-0.1 -0.938 11.8-124.7-129.0 151.8 -19.8 -16.9 22.7 34 40 A W E S+B 67 0B 164 33,-2.3 33,-3.4 -2,-0.3 -2,-0.0 -0.975 82.1 27.3-147.9 135.9 -21.0 -20.3 21.4 35 41 A P - 0 0 44 0, 0.0 -1,-0.2 0, 0.0 3,-0.1 0.601 65.9-158.2 -80.0 161.9 -21.5 -21.4 18.7 36 42 A P S S+ 0 0 65 0, 0.0 -17,-2.9 0, 0.0 2,-0.3 0.707 73.6 22.4 -79.7 -17.5 -19.1 -19.4 16.6 37 43 A b E -A 18 0A 51 -19,-0.3 2,-0.3 -17,-0.0 -19,-0.2 -0.997 59.8-172.4-150.1 150.6 -21.0 -20.0 13.2 38 44 A V E -A 17 0A 32 -21,-2.3 -21,-3.4 -2,-0.3 2,-0.3 -0.874 32.6 -98.6-136.7 163.2 -24.4 -20.9 11.9 39 45 A E E +A 16 0A 132 -2,-0.3 2,-0.3 -23,-0.2 -23,-0.2 -0.656 40.5 175.9 -83.3 139.8 -26.0 -21.8 8.6 40 46 A V E -A 15 0A 2 -25,-2.5 -25,-3.4 -2,-0.3 2,-0.4 -0.941 31.0-115.1-133.5 162.2 -27.8 -19.1 6.7 41 47 A Q E +A 14 0A 64 -2,-0.3 47,-3.2 -27,-0.2 2,-0.3 -0.851 40.0 177.4 -97.9 133.2 -29.5 -19.0 3.2 42 48 A R E -A 13 0A 55 -29,-2.9 -29,-2.7 -2,-0.4 2,-0.4 -0.982 34.1-109.5-141.0 148.7 -27.9 -16.7 0.7 43 49 A c E +A 12 0A 18 -2,-0.3 2,-0.3 -31,-0.2 -31,-0.2 -0.635 52.4 149.8 -75.0 124.1 -28.2 -15.6 -2.9 44 50 A S E +A 11 0A 29 -33,-2.5 -33,-2.4 -2,-0.4 2,-0.2 -0.956 14.9 79.6-147.0 169.2 -25.4 -16.9 -5.0 45 51 A G - 0 0 26 -2,-0.3 2,-0.4 -35,-0.2 9,-0.4 -0.616 69.7 -68.6 119.3 179.4 -24.7 -18.0 -8.6 46 52 A b - 0 0 83 -38,-2.7 -36,-0.3 -2,-0.2 2,-0.1 -0.908 31.8-149.8-120.2 136.1 -24.1 -16.3 -11.9 47 53 A d - 0 0 24 -2,-0.4 -39,-0.1 5,-0.3 7,-0.1 -0.279 40.7 -89.3 -87.8 178.5 -26.2 -14.2 -14.1 48 54 A N S S- 0 0 156 -2,-0.1 2,-0.3 1,-0.1 5,-0.0 0.778 100.5 -0.7 -59.4 -36.3 -26.0 -13.9 -18.0 49 55 A N S > S- 0 0 88 3,-0.1 3,-1.3 0, 0.0 -2,-0.2 -0.939 75.9 -98.1-153.8 169.0 -23.6 -11.0 -18.1 50 56 A R T 3 S+ 0 0 252 -2,-0.3 -2,-0.0 1,-0.3 3,-0.0 0.295 107.1 76.9 -84.1 9.4 -21.6 -8.6 -15.9 51 57 A N T 3 S+ 0 0 63 44,-0.0 2,-0.3 1,-0.0 -1,-0.3 0.588 99.6 48.9 -86.2 -13.1 -24.1 -5.8 -16.2 52 58 A V < - 0 0 34 -3,-1.3 2,-0.3 43,-0.2 -5,-0.3 -0.916 68.3-160.5-125.2 153.9 -26.2 -7.7 -13.7 53 59 A Q E - C 0 94B 118 41,-3.0 41,-2.4 -2,-0.3 2,-0.5 -0.968 31.1-103.3-133.3 149.6 -25.6 -9.4 -10.3 54 60 A a E + C 0 93B 16 -9,-0.4 39,-0.2 -2,-0.3 -9,-0.1 -0.603 52.5 167.3 -73.1 117.2 -27.4 -12.0 -8.2 55 61 A R E - C 0 92B 110 37,-2.7 37,-2.3 -2,-0.5 -11,-0.1 -0.951 37.4-100.4-137.7 148.4 -29.2 -10.1 -5.4 56 62 A P E - C 0 91B 42 0, 0.0 35,-0.3 0, 0.0 3,-0.1 -0.379 23.1-173.1 -70.8 148.8 -31.9 -11.0 -2.8 57 63 A T E S+ 0 0 75 33,-3.5 2,-0.4 1,-0.4 34,-0.2 0.653 78.1 21.7-111.6 -30.5 -35.5 -9.9 -3.4 58 64 A Q E - C 0 90B 117 32,-1.0 31,-3.1 2,-0.0 32,-1.2 -0.979 68.7-169.2-137.4 132.3 -36.9 -10.9 -0.1 59 65 A V E - C 0 88B 68 -2,-0.4 2,-0.5 29,-0.2 29,-0.2 -0.903 8.8-150.6-115.5 144.9 -35.0 -11.4 3.2 60 66 A Q E - C 0 87B 110 27,-2.9 27,-2.5 -2,-0.4 2,-0.3 -0.966 13.0-135.6-119.5 122.2 -36.3 -13.0 6.4 61 67 A L E - C 0 86B 118 -2,-0.5 25,-0.2 25,-0.2 23,-0.0 -0.562 22.6-172.4 -74.7 133.6 -34.9 -12.0 9.9 62 68 A R E - C 0 85B 83 23,-3.1 23,-3.5 -2,-0.3 2,-0.3 -0.907 10.3-152.4-134.8 103.0 -34.2 -15.0 12.1 63 69 A P E - C 0 84B 85 0, 0.0 2,-0.3 0, 0.0 21,-0.3 -0.583 15.9-175.2 -74.7 131.9 -33.3 -14.5 15.8 64 70 A V E - C 0 83B 36 19,-3.3 19,-2.8 -2,-0.3 2,-0.6 -0.947 23.3-123.3-124.5 154.8 -31.2 -17.3 17.4 65 71 A Q E - C 0 82B 129 -2,-0.3 2,-0.3 17,-0.2 17,-0.2 -0.832 28.2-167.7-100.5 121.8 -30.1 -17.7 21.0 66 72 A V E - C 0 81B 2 15,-3.3 15,-2.1 -2,-0.6 2,-0.4 -0.765 22.9-114.2-107.4 157.0 -26.4 -17.9 21.6 67 73 A R E -BC 34 80B 182 -33,-3.4 -33,-2.3 -2,-0.3 2,-0.4 -0.753 33.1-170.1 -87.5 134.4 -24.5 -18.9 24.7 68 74 A K E -BC 33 79B 22 11,-2.5 11,-3.0 -2,-0.4 2,-0.5 -0.991 12.3-165.9-129.0 131.7 -22.4 -16.2 26.3 69 75 A I E -BC 32 78B 54 -37,-2.6 -37,-2.4 -2,-0.4 2,-0.5 -0.980 8.8-158.2-113.2 121.1 -19.8 -16.5 29.1 70 76 A E E -BC 31 77B 37 7,-2.7 7,-2.5 -2,-0.5 2,-0.6 -0.863 13.1-144.1 -93.8 130.0 -18.7 -13.2 30.8 71 77 A I E + C 0 76B 64 -41,-2.9 2,-0.5 -2,-0.5 -41,-0.0 -0.873 23.1 173.7-102.1 120.6 -15.4 -13.6 32.5 72 78 A V E > S- C 0 75B 68 3,-2.4 3,-1.8 -2,-0.6 -2,-0.0 -0.978 75.8 -22.2-131.9 111.1 -15.0 -11.6 35.7 73 79 A R T 3 S- 0 0 240 -2,-0.5 -1,-0.1 1,-0.3 -2,-0.0 0.886 126.6 -53.8 48.3 46.8 -11.8 -12.2 37.7 74 80 A K T 3 S+ 0 0 95 1,-0.2 -1,-0.3 0, 0.0 -3,-0.1 0.506 115.7 115.4 71.3 8.8 -11.4 -15.5 36.0 75 81 A K E < -C 72 0B 51 -3,-1.8 -3,-2.4 2,-0.0 2,-0.3 -0.889 63.9-123.7-108.4 139.7 -14.9 -16.7 36.9 76 82 A P E -C 71 0B 69 0, 0.0 2,-0.5 0, 0.0 -5,-0.2 -0.635 15.8-164.4 -84.5 136.3 -17.6 -17.4 34.3 77 83 A I E -C 70 0B 70 -7,-2.5 -7,-2.7 -2,-0.3 2,-0.5 -0.979 20.9-138.4-112.7 120.5 -21.0 -15.7 34.4 78 84 A F E +C 69 0B 157 -2,-0.5 2,-0.3 -9,-0.2 -9,-0.2 -0.663 34.7 156.2 -87.9 125.3 -23.5 -17.6 32.1 79 85 A K E -C 68 0B 93 -11,-3.0 -11,-2.5 -2,-0.5 2,-0.4 -0.860 33.8-128.3-135.4 168.6 -25.7 -15.5 30.0 80 86 A K E -C 67 0B 149 -2,-0.3 2,-0.3 -13,-0.2 -13,-0.2 -0.958 19.2-168.4-119.9 142.7 -27.7 -15.7 26.8 81 87 A A E -C 66 0B 18 -15,-2.1 -15,-3.3 -2,-0.4 2,-0.5 -0.932 15.8-135.4-125.0 154.1 -27.6 -13.3 23.9 82 88 A T E -C 65 0B 95 -2,-0.3 2,-0.5 -17,-0.2 -17,-0.2 -0.949 15.7-167.9-113.7 121.3 -29.9 -13.1 20.9 83 89 A V E -C 64 0B 7 -19,-2.8 -19,-3.3 -2,-0.5 2,-0.8 -0.931 15.6-141.7-105.2 132.4 -28.4 -12.7 17.4 84 90 A T E -C 63 0B 86 -2,-0.5 2,-0.1 -21,-0.3 -2,-0.0 -0.832 20.7-157.9 -95.7 104.7 -30.8 -11.8 14.6 85 91 A L E -C 62 0B 3 -23,-3.5 -23,-3.1 -2,-0.8 2,-0.6 -0.449 9.3-136.0 -77.4 153.8 -29.7 -13.7 11.4 86 92 A E E -C 61 0B 82 -25,-0.2 2,-0.4 -2,-0.1 -25,-0.2 -0.956 19.9-168.9-112.9 112.9 -30.6 -12.5 7.9 87 93 A D E -C 60 0B 18 -27,-2.5 -27,-2.9 -2,-0.6 2,-0.4 -0.845 19.4-132.1 -95.9 132.3 -31.8 -15.3 5.6 88 94 A H E -C 59 0B 23 -47,-3.2 -29,-0.2 -2,-0.4 3,-0.1 -0.730 23.6-180.0 -78.8 130.6 -32.2 -14.7 1.8 89 95 A L E + 0 0 74 -31,-3.1 2,-0.3 -2,-0.4 -30,-0.2 0.732 63.7 3.6-102.9 -31.2 -35.5 -16.1 0.7 90 96 A A E -C 58 0B 33 -32,-1.2 -33,-3.5 -79,-0.1 -32,-1.0 -0.986 62.3-160.4-154.9 157.7 -35.4 -15.2 -3.1 91 97 A c E -C 56 0B 27 -35,-0.3 2,-0.3 -2,-0.3 -79,-0.1 -0.890 5.6-175.7-136.3 157.8 -33.0 -13.8 -5.6 92 98 A K E -C 55 0B 114 -37,-2.3 -37,-2.7 -2,-0.3 2,-0.5 -0.964 38.5-100.5-145.4 160.4 -33.0 -12.2 -9.0 93 99 A d E -C 54 0B 57 -2,-0.3 2,-0.3 -39,-0.2 -39,-0.2 -0.759 49.9-171.0 -79.4 128.2 -30.4 -10.9 -11.4 94 100 A E E C 53 0B 86 -41,-2.4 -41,-3.0 -2,-0.5 -47,-0.1 -0.932 360.0 360.0-136.0 145.0 -30.3 -7.2 -11.0 95 101 A T 0 0 155 -2,-0.3 -43,-0.2 -43,-0.2 -42,-0.1 0.049 360.0 360.0 -89.2 360.0 -28.6 -4.3 -12.8