==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=14-DEC-2012 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER HORMONE/DNA 26-OCT-12 4HQX . COMPND 2 MOLECULE: PLATELET-DERIVED GROWTH FACTOR SUBUNIT B; . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR D.R.DAVIES,T.E.EDWARDS,N.JANJIC,A.D.GELINAS,C.ZHANG,T.C.JARV . 95 1 4 4 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 7486.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 59 62.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 36 37.9 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 1 1.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 18 18.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 2 2.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 2 2.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 7 A I 0 0 142 0, 0.0 2,-0.6 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 134.5 12.5 9.5 61.6 2 8 A A - 0 0 102 3,-0.0 3,-0.1 0, 0.0 0, 0.0 -0.938 360.0-146.2-110.2 107.3 12.6 5.7 61.3 3 9 A E - 0 0 148 -2,-0.6 2,-0.1 1,-0.1 3,-0.0 -0.284 29.5 -90.6 -67.1 151.7 9.1 4.3 60.6 4 10 A P - 0 0 102 0, 0.0 2,-0.1 0, 0.0 -1,-0.1 -0.458 47.7-112.6 -58.6 134.0 8.0 0.9 62.0 5 11 A A - 0 0 103 -2,-0.1 2,-0.4 -3,-0.1 -3,-0.0 -0.490 32.1-146.7 -64.0 138.1 8.8 -1.8 59.4 6 12 A M - 0 0 162 -2,-0.1 2,-0.1 -3,-0.0 -1,-0.0 -0.902 20.4-104.6-110.7 144.0 5.6 -3.2 58.0 7 13 A I - 0 0 112 -2,-0.4 2,-1.3 1,-0.1 -1,-0.0 -0.410 19.8-129.4 -69.3 134.1 5.3 -6.9 56.9 8 14 A A - 0 0 55 -2,-0.1 38,-2.7 39,-0.1 -1,-0.1 -0.746 41.9-149.5 -75.0 96.9 5.3 -7.7 53.2 9 15 A E - 0 0 110 -2,-1.3 2,-0.6 36,-0.2 35,-0.2 -0.244 21.0 -89.5 -73.0 163.0 2.2 -9.8 53.5 10 16 A a S S+ 0 0 26 36,-0.3 2,-0.3 35,-0.2 35,-0.2 -0.647 79.0 109.3 -74.7 113.4 1.3 -12.8 51.4 11 17 A K E -A 44 0A 90 33,-2.5 33,-3.1 -2,-0.6 2,-0.3 -0.962 69.4 -61.9-168.6 178.3 -0.5 -11.5 48.3 12 18 A T E +A 43 0A 43 -2,-0.3 2,-0.3 31,-0.2 31,-0.2 -0.601 48.6 170.0 -80.5 136.0 -0.3 -10.8 44.6 13 19 A R E -A 42 0A 72 29,-2.6 29,-3.1 -2,-0.3 2,-0.4 -0.948 41.1 -92.9-136.9 159.8 2.2 -8.4 43.2 14 20 A T E -A 41 0A 73 -2,-0.3 2,-0.3 27,-0.2 27,-0.2 -0.613 47.4-179.6 -75.8 122.4 3.4 -7.6 39.7 15 21 A E E -A 40 0A 86 25,-3.4 25,-2.3 -2,-0.4 2,-0.5 -0.857 30.8-108.7-120.9 159.3 6.4 -9.7 38.5 16 22 A V E -A 39 0A 117 -2,-0.3 2,-0.5 23,-0.2 23,-0.2 -0.768 31.1-164.4 -89.4 124.8 8.5 -9.8 35.3 17 23 A F E -A 38 0A 56 21,-3.1 21,-2.5 -2,-0.5 2,-0.5 -0.940 11.7-142.0-108.2 125.6 7.9 -13.0 33.2 18 24 A E E -A 37 0A 143 -2,-0.5 2,-0.4 19,-0.2 19,-0.3 -0.751 22.1-123.5 -85.5 130.0 10.4 -13.9 30.5 19 25 A I - 0 0 11 17,-3.0 2,-0.5 -2,-0.5 3,-0.1 -0.652 25.7-132.6 -76.6 125.6 8.7 -15.3 27.4 20 26 A S > - 0 0 40 -2,-0.4 4,-1.1 1,-0.2 3,-0.3 -0.708 14.8-163.1 -86.3 121.0 10.2 -18.7 26.7 21 27 A R H > S+ 0 0 107 -2,-0.5 4,-2.6 1,-0.2 3,-0.3 0.886 90.5 67.1 -68.3 -35.4 11.2 -19.3 23.1 22 28 A R H 4 S+ 0 0 195 1,-0.2 -1,-0.2 2,-0.2 5,-0.1 0.861 101.4 46.7 -48.1 -44.1 11.2 -23.0 24.0 23 29 A L H 4 S+ 0 0 95 -3,-0.3 -1,-0.2 1,-0.2 3,-0.2 0.812 108.5 54.9 -76.5 -28.0 7.5 -23.0 24.5 24 30 A I H < S- 0 0 33 -4,-1.1 2,-0.3 -3,-0.3 -2,-0.2 0.952 135.3 -8.7 -64.5 -49.4 6.8 -21.1 21.3 25 31 A D < + 0 0 34 -4,-2.6 -1,-0.3 1,-0.1 -2,-0.1 -0.864 55.8 178.0-153.2 116.8 8.8 -23.7 19.3 26 32 A R S S+ 0 0 81 -2,-0.3 -3,-0.1 -3,-0.2 -1,-0.1 0.669 84.0 52.2 -85.9 -17.8 10.8 -26.6 20.7 27 33 A T S S+ 0 0 121 1,-0.1 2,-0.3 -5,-0.1 -1,-0.1 0.440 106.5 45.8-106.3 -1.5 11.8 -28.1 17.3 28 34 A N - 0 0 85 -3,-0.1 3,-0.1 1,-0.1 -1,-0.1 -0.997 49.2-172.4-141.1 145.5 13.2 -25.1 15.4 29 35 A A + 0 0 83 -2,-0.3 2,-1.9 1,-0.1 -1,-0.1 0.547 60.8 98.5-110.1 -13.5 15.7 -22.4 16.5 30 36 A N + 0 0 69 40,-0.0 41,-3.0 41,-0.0 2,-0.3 -0.170 68.2 91.8 -79.3 46.3 15.7 -20.1 13.5 31 37 A F E -B 70 0B 7 -2,-1.9 2,-0.3 39,-0.2 39,-0.2 -0.959 53.6-151.6-142.6 159.0 13.3 -17.5 15.0 32 38 A L E -B 69 0B 102 37,-2.3 37,-2.6 -2,-0.3 2,-0.3 -0.906 14.4-159.1-123.7 153.2 12.9 -14.3 17.0 33 39 A V E -B 68 0B 24 -2,-0.3 35,-0.2 35,-0.2 -12,-0.1 -0.952 12.7-123.8-131.7 150.7 10.1 -13.2 19.3 34 40 A W E S+B 67 0B 172 33,-2.3 33,-2.8 -2,-0.3 -2,-0.0 -0.977 82.7 28.1-148.3 136.9 8.9 -9.8 20.6 35 41 A P - 0 0 44 0, 0.0 -1,-0.2 0, 0.0 3,-0.1 0.605 65.5-160.6 -79.2 163.4 8.4 -8.7 23.3 36 42 A P S S+ 0 0 62 0, 0.0 -17,-3.0 0, 0.0 2,-0.3 0.711 73.3 27.5 -80.0 -20.6 10.9 -10.8 25.4 37 43 A b E -A 18 0A 56 -19,-0.3 2,-0.3 -17,-0.0 -19,-0.2 -0.999 60.9-174.1-145.9 145.2 9.1 -10.1 28.8 38 44 A V E -A 17 0A 30 -21,-2.5 -21,-3.1 -2,-0.3 2,-0.3 -0.927 31.6-101.6-135.2 158.3 5.7 -9.3 30.1 39 45 A E E +A 16 0A 135 -2,-0.3 2,-0.3 -23,-0.2 -23,-0.2 -0.582 40.5 174.2 -76.8 136.7 4.1 -8.4 33.5 40 46 A V E -A 15 0A 2 -25,-2.3 -25,-3.4 -2,-0.3 2,-0.5 -0.926 32.5-113.1-133.5 164.4 2.3 -11.1 35.4 41 47 A Q E +A 14 0A 60 -2,-0.3 47,-2.6 -27,-0.2 2,-0.3 -0.875 39.3 178.6 -98.8 130.4 0.7 -11.2 38.8 42 48 A R E -A 13 0A 53 -29,-3.1 -29,-2.6 -2,-0.5 2,-0.4 -0.982 33.1-111.3-134.7 144.1 2.4 -13.5 41.3 43 49 A c E +A 12 0A 17 -2,-0.3 2,-0.3 -31,-0.2 -31,-0.2 -0.588 51.4 154.2 -67.2 125.8 1.9 -14.5 45.0 44 50 A S E +A 11 0A 28 -33,-3.1 -33,-2.5 -2,-0.4 2,-0.2 -0.941 14.0 74.5-143.9 172.6 4.7 -13.2 47.1 45 51 A G - 0 0 27 -2,-0.3 2,-0.4 -35,-0.2 9,-0.3 -0.576 68.7 -67.0 116.3-177.3 5.4 -12.2 50.7 46 52 A b - 0 0 83 -38,-2.7 -36,-0.3 -2,-0.2 2,-0.1 -0.947 31.6-151.0-126.1 131.6 6.0 -13.8 54.0 47 53 A d - 0 0 23 -2,-0.4 7,-0.1 5,-0.3 -39,-0.1 -0.324 41.2 -89.1 -86.0 172.5 3.8 -15.8 56.3 48 54 A N S S+ 0 0 162 -2,-0.1 2,-0.2 2,-0.0 -1,-0.0 0.784 100.8 0.7 -50.2 -40.9 4.0 -16.1 60.2 49 55 A N S > S- 0 0 89 3,-0.1 3,-0.6 4,-0.0 -2,-0.2 -0.822 75.0 -98.5-145.8-179.3 6.4 -19.0 60.2 50 56 A R T 3 S+ 0 0 254 -2,-0.2 -2,-0.0 1,-0.2 3,-0.0 0.325 104.6 76.5 -95.5 6.1 8.4 -21.5 58.1 51 57 A N T 3 S+ 0 0 71 44,-0.1 2,-0.4 1,-0.1 -1,-0.2 0.510 97.9 55.3 -85.6 -7.9 5.9 -24.4 58.3 52 58 A V < - 0 0 39 -3,-0.6 -5,-0.3 43,-0.2 2,-0.3 -0.981 67.3-159.5-131.0 142.1 3.9 -22.5 55.7 53 59 A Q E - C 0 94B 29 41,-2.0 41,-2.5 -2,-0.4 2,-1.0 -0.801 32.3-106.0-114.6 155.3 4.6 -21.0 52.2 54 60 A a E + C 0 93B 20 -9,-0.3 39,-0.2 -2,-0.3 -43,-0.1 -0.723 52.9 171.4 -85.9 100.3 2.8 -18.3 50.3 55 61 A R E - C 0 92B 137 37,-2.0 37,-2.1 -2,-1.0 2,-0.2 -0.749 35.4-101.4-115.2 153.0 0.9 -20.2 47.6 56 62 A P E - C 0 91B 46 0, 0.0 35,-0.3 0, 0.0 3,-0.1 -0.485 23.9-173.9 -73.1 141.9 -1.8 -19.3 44.9 57 63 A T E S+ 0 0 74 33,-3.6 2,-0.4 1,-0.3 34,-0.2 0.759 76.1 18.9-100.5 -39.4 -5.4 -20.3 45.6 58 64 A Q E - C 0 90B 120 32,-1.1 31,-3.1 2,-0.0 32,-1.3 -0.999 69.2-163.9-134.6 139.0 -6.9 -19.2 42.3 59 65 A V E - C 0 88B 66 -2,-0.4 2,-0.6 29,-0.2 29,-0.2 -0.924 9.3-147.4-123.1 143.6 -5.1 -18.6 38.9 60 66 A Q E - C 0 87B 105 27,-2.6 27,-2.3 -2,-0.3 2,-0.2 -0.922 12.5-143.6-115.2 107.2 -6.2 -16.9 35.7 61 67 A L E - C 0 86B 113 -2,-0.6 25,-0.2 25,-0.2 23,-0.0 -0.474 21.8-174.0 -64.4 135.8 -4.9 -18.2 32.3 62 68 A R E - C 0 85B 79 23,-3.1 23,-3.8 -2,-0.2 2,-0.3 -0.941 12.6-149.8-140.9 110.6 -4.3 -15.2 30.0 63 69 A P E - C 0 84B 89 0, 0.0 2,-0.4 0, 0.0 21,-0.3 -0.663 16.1-172.8 -84.1 137.6 -3.4 -15.6 26.3 64 70 A V E - C 0 83B 35 19,-3.1 19,-3.5 -2,-0.3 2,-0.6 -0.982 21.8-127.1-129.5 149.1 -1.2 -13.0 24.7 65 71 A Q E - C 0 82B 129 -2,-0.4 2,-0.4 17,-0.2 17,-0.2 -0.799 26.8-169.2 -95.2 118.7 -0.2 -12.5 21.1 66 72 A V E - C 0 81B 1 15,-3.3 15,-2.6 -2,-0.6 2,-0.3 -0.860 24.3-114.4-107.8 148.9 3.6 -12.1 20.5 67 73 A R E -BC 34 80B 187 -33,-2.8 -33,-2.3 -2,-0.4 2,-0.4 -0.604 34.6-167.3 -77.8 138.3 5.3 -11.1 17.3 68 74 A K E -BC 33 79B 19 11,-2.3 11,-2.9 -2,-0.3 2,-0.5 -0.992 14.3-166.1-132.9 134.8 7.4 -13.7 15.7 69 75 A I E -BC 32 78B 55 -37,-2.6 -37,-2.3 -2,-0.4 2,-0.5 -0.964 7.4-160.3-117.6 115.4 10.0 -13.6 12.9 70 76 A E E -BC 31 77B 39 7,-2.6 7,-2.8 -2,-0.5 2,-0.7 -0.830 15.8-142.5 -88.5 128.5 11.1 -16.9 11.3 71 77 A I E + C 0 76B 64 -41,-3.0 2,-0.5 -2,-0.5 3,-0.1 -0.846 23.0 177.9 -98.1 114.9 14.5 -16.4 9.5 72 78 A V E > S- C 0 75B 66 3,-2.9 3,-2.2 -2,-0.7 -2,-0.0 -0.974 72.5 -22.6-124.1 117.2 14.6 -18.4 6.3 73 79 A R T 3 S- 0 0 239 -2,-0.5 -1,-0.2 1,-0.3 -2,-0.0 0.908 127.2 -53.0 40.6 52.8 17.8 -18.0 4.1 74 80 A K T 3 S+ 0 0 97 1,-0.2 -1,-0.3 -3,-0.1 -3,-0.1 0.477 118.4 110.0 69.5 6.2 18.4 -14.7 5.8 75 81 A K E < -C 72 0B 52 -3,-2.2 -3,-2.9 2,-0.0 2,-0.4 -0.881 67.0-119.5-112.6 144.5 14.9 -13.3 5.0 76 82 A P E -C 71 0B 68 0, 0.0 2,-0.6 0, 0.0 -5,-0.2 -0.690 16.3-163.9 -90.3 131.7 12.1 -12.7 7.6 77 83 A I E -C 70 0B 78 -7,-2.8 -7,-2.6 -2,-0.4 2,-0.4 -0.959 22.1-137.5-106.2 119.7 8.8 -14.4 7.6 78 84 A F E +C 69 0B 153 -2,-0.6 2,-0.3 -9,-0.2 -9,-0.2 -0.638 34.3 158.5 -84.7 130.2 6.3 -12.5 9.8 79 85 A K E -C 68 0B 101 -11,-2.9 -11,-2.3 -2,-0.4 2,-0.4 -0.851 32.8-130.1-137.7 169.6 4.1 -14.7 12.1 80 86 A K E -C 67 0B 141 -2,-0.3 2,-0.3 -13,-0.2 -13,-0.2 -0.992 19.8-166.8-125.3 138.0 2.1 -14.3 15.3 81 87 A A E -C 66 0B 17 -15,-2.6 -15,-3.3 -2,-0.4 2,-0.5 -0.922 15.3-135.0-122.4 151.5 2.3 -16.7 18.2 82 88 A T E -C 65 0B 98 -2,-0.3 2,-0.5 -17,-0.2 -17,-0.2 -0.926 16.8-168.3-106.9 121.8 -0.0 -17.1 21.2 83 89 A V E -C 64 0B 3 -19,-3.5 -19,-3.1 -2,-0.5 2,-0.9 -0.950 16.6-140.0-107.4 128.9 1.6 -17.4 24.7 84 90 A T E -C 63 0B 88 -2,-0.5 2,-0.2 -21,-0.3 -2,-0.0 -0.794 21.8-160.4 -90.5 104.4 -0.7 -18.5 27.5 85 91 A L E -C 62 0B 2 -23,-3.8 -23,-3.1 -2,-0.9 2,-0.5 -0.524 8.3-139.9 -78.6 149.9 0.3 -16.5 30.6 86 92 A E E -C 61 0B 77 -25,-0.2 2,-0.4 -2,-0.2 -25,-0.2 -0.952 16.7-170.0-112.9 114.3 -0.6 -17.5 34.2 87 93 A D E -C 60 0B 19 -27,-2.3 -27,-2.6 -2,-0.5 2,-0.5 -0.799 21.1-131.5 -92.2 140.9 -1.7 -14.8 36.6 88 94 A H E -C 59 0B 24 -47,-2.6 -29,-0.2 -2,-0.4 3,-0.1 -0.841 23.1-178.3 -86.0 127.8 -2.1 -15.5 40.3 89 95 A L E + 0 0 82 -31,-3.1 2,-0.3 -2,-0.5 -30,-0.2 0.745 65.1 6.4 -97.8 -31.4 -5.5 -14.1 41.4 90 96 A A E -C 58 0B 32 -32,-1.3 -33,-3.6 -79,-0.1 -32,-1.1 -0.987 61.5-164.6-153.7 152.1 -5.3 -14.9 45.1 91 97 A c E -C 56 0B 26 -35,-0.3 2,-0.3 -2,-0.3 -79,-0.1 -0.922 4.7-177.8-133.6 153.3 -2.9 -16.4 47.7 92 98 A K E -C 55 0B 118 -37,-2.1 -37,-2.0 -2,-0.3 2,-0.3 -0.971 39.8 -99.7-143.0 156.3 -2.9 -17.8 51.2 93 99 A d E -C 54 0B 52 -2,-0.3 2,-0.3 -39,-0.2 -39,-0.2 -0.649 58.1-168.0 -74.8 134.4 -0.2 -19.1 53.5 94 100 A E E C 53 0B 64 -41,-2.5 -41,-2.0 -2,-0.3 -47,-0.1 -0.901 360.0 360.0-144.1 152.7 -0.3 -22.9 53.2 95 101 A T 0 0 146 -2,-0.3 -43,-0.2 -43,-0.2 -44,-0.1 -0.404 360.0 360.0 58.4 360.0 0.7 -26.4 54.4