==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=4-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER ANTIMICROBIAL PROTEIN 20-DEC-00 1HR1 . COMPND 2 MOLECULE: INDOLICIDIN; . SOURCE 2 SYNTHETIC: YES; . AUTHOR C.L.FRIEDRICH,A.ROZEK,A.PATRZYKAT,R.E.W.HANCOCK . 13 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 1946.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 8 61.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 1 7.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 1 7.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 6 46.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A I 0 0 212 0, 0.0 2,-1.3 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 26.4 -12.1 0.0 8.5 2 2 A L + 0 0 173 2,-0.1 2,-0.2 0, 0.0 0, 0.0 -0.657 360.0 74.3 -86.3 94.0 -11.1 2.3 5.7 3 3 A A + 0 0 72 -2,-1.3 0, 0.0 3,-0.0 0, 0.0 -0.722 34.7 106.0 167.5 140.7 -7.6 1.1 4.7 4 4 A W S > S+ 0 0 218 -2,-0.2 4,-0.8 0, 0.0 3,-0.2 -0.143 77.8 59.4 171.3 -60.3 -6.0 -1.8 2.9 5 5 A K H > S+ 0 0 178 1,-0.2 4,-0.6 2,-0.2 -2,-0.0 0.591 102.6 63.7 -69.2 -4.9 -4.7 -0.9 -0.6 6 6 A W H > S+ 0 0 194 2,-0.2 4,-1.2 1,-0.2 -1,-0.2 0.923 90.9 58.3 -84.6 -48.5 -2.5 1.6 1.2 7 7 A A H > S+ 0 0 68 -3,-0.2 4,-1.4 2,-0.2 -2,-0.2 0.807 95.7 74.8 -52.2 -25.9 -0.4 -0.8 3.3 8 8 A W H >X S+ 0 0 141 -4,-0.8 3,-3.5 1,-0.2 4,-1.2 0.962 97.6 37.0 -51.0 -84.5 0.7 -2.2 -0.1 9 9 A W H 3X S+ 0 0 126 -4,-0.6 4,-1.1 1,-0.3 -1,-0.2 0.786 110.6 67.6 -42.9 -25.0 3.1 0.4 -1.4 10 10 A A H 3< S+ 0 0 57 -4,-1.2 -1,-0.3 1,-0.2 -2,-0.2 0.864 98.8 50.0 -66.9 -31.2 4.2 0.7 2.3 11 11 A W H << S+ 0 0 169 -3,-3.5 -2,-0.2 -4,-1.4 -1,-0.2 0.937 99.2 63.5 -71.7 -46.0 5.6 -2.8 2.1 12 12 A R H < 0 0 119 -4,-1.2 -1,-0.2 1,-0.2 -2,-0.2 0.876 360.0 360.0 -47.1 -38.4 7.6 -2.1 -1.2 13 13 A R < 0 0 219 -4,-1.1 -1,-0.2 -3,-0.0 -2,-0.2 0.997 360.0 360.0 -60.3 360.0 9.6 0.4 0.8