==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=4-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER DNA-BINDING RECEPTOR 25-JUL-93 1HRA . COMPND 2 MOLECULE: RETINOIC ACID RECEPTOR; . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR R.M.A.KNEGTEL,M.KATAHIRA,J.G.SCHILTHUIS,A.M.J.J.BONVIN, . 80 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 4675.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 38 47.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 9 11.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 6 7.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 15 18.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 3 3.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A M 0 0 133 0, 0.0 53,-1.0 0, 0.0 55,-0.2 0.000 360.0 360.0 360.0 136.8 17.9 3.8 0.8 2 2 A P - 0 0 107 0, 0.0 52,-0.8 0, 0.0 2,-0.3 0.965 360.0 -50.7 -62.9 -91.4 16.3 4.5 4.3 3 3 A R + 0 0 125 50,-0.1 3,-0.1 51,-0.1 10,-0.1 -0.972 57.0 147.4-156.0 134.1 13.6 7.3 3.8 4 4 A V S S+ 0 0 97 8,-0.3 2,-0.4 -2,-0.3 9,-0.1 0.239 77.1 4.1-119.5 -80.3 13.3 10.7 2.2 5 5 A Y - 0 0 134 7,-0.2 -1,-0.3 1,-0.1 7,-0.1 -0.891 58.0-172.7-115.1 139.0 9.8 11.4 0.8 6 6 A K + 0 0 50 -2,-0.4 7,-1.1 7,-0.1 2,-1.0 0.844 24.7 150.2 -64.3 -60.9 6.8 9.1 1.0 7 7 A P S S+ 0 0 23 0, 0.0 9,-0.3 0, 0.0 3,-0.1 0.075 70.7 64.8 -72.9 46.8 4.1 10.0 -0.8 8 8 A C S S- 0 0 0 -2,-1.0 17,-1.0 16,-0.4 18,-0.2 0.769 109.5-125.2 -84.4 -37.0 3.0 6.5 -1.4 9 9 A F S S+ 0 0 74 15,-0.2 15,-0.1 16,-0.1 3,-0.1 -0.999 84.5 5.3 -89.0 6.6 2.7 6.7 1.7 10 10 A V S S+ 0 0 6 54,-0.1 14,-0.1 -3,-0.1 58,-0.0 0.707 109.5 73.4-124.8 -29.4 4.9 3.7 2.2 11 11 A C S S- 0 0 15 3,-0.1 42,-0.1 -5,-0.1 -1,-0.1 -0.170 106.9-113.6-117.7 43.9 6.4 2.3 -1.0 12 12 A Q + 0 0 0 -6,-0.4 -8,-0.3 -3,-0.1 -7,-0.2 -0.311 68.3 3.4-161.0 54.7 8.3 5.0 -0.8 13 13 A D S S+ 0 0 32 -7,-1.1 2,-0.1 1,-0.4 -7,-0.1 0.258 81.4 106.2 177.1 -41.7 8.6 8.1 -3.0 14 14 A K + 0 0 81 -8,-0.4 -1,-0.4 -3,-0.0 2,-0.3 -0.493 50.8 159.0 -72.8 133.1 6.0 8.0 -5.8 15 15 A S + 0 0 52 10,-0.3 10,-0.2 -2,-0.1 12,-0.2 -0.841 23.9 166.9-132.3 167.9 3.1 10.5 -5.3 16 16 A S - 0 0 66 -9,-0.3 3,-0.3 -2,-0.3 10,-0.1 0.155 49.4 -25.2 161.7 138.8 0.3 12.6 -6.3 17 17 A G S S- 0 0 58 1,-0.2 2,-0.7 2,-0.1 9,-0.1 0.957 73.3 -98.0 59.3 101.1 -2.8 14.7 -5.4 18 18 A Y + 0 0 78 1,-0.1 -1,-0.2 3,-0.0 3,-0.2 -0.258 51.9 159.0 -76.1 93.3 -4.4 13.7 -2.1 19 19 A H + 0 0 95 -2,-0.7 2,-0.6 -3,-0.3 -1,-0.1 0.974 62.3 6.2 -52.3 -96.1 -7.5 11.4 -2.5 20 20 A Y S S- 0 0 47 1,-0.1 2,-1.6 55,-0.0 54,-0.4 -0.918 108.7 -55.5-124.3 102.8 -8.2 9.5 0.8 21 21 A G S S+ 0 0 75 -2,-0.6 52,-0.1 52,-0.2 2,-0.1 -0.020 113.3 50.0 79.7 -27.7 -6.5 9.9 4.3 22 22 A V S S- 0 0 20 -2,-1.6 2,-0.4 -14,-0.1 -1,-0.1 -0.121 90.5 -96.4-115.1-164.6 -2.9 9.3 3.2 23 23 A S - 0 0 35 48,-0.1 2,-0.4 -2,-0.1 -13,-0.1 -0.969 52.7-158.8-118.4 118.1 -0.4 10.6 0.7 24 24 A A - 0 0 0 -2,-0.4 -16,-0.4 -15,-0.1 -8,-0.2 -0.960 31.6-133.7-117.9 155.3 -0.5 8.1 -2.2 25 25 A C - 0 0 21 -17,-1.0 2,-2.4 -2,-0.4 -10,-0.3 0.365 38.6-130.3 -71.1 -5.2 1.7 6.9 -5.0 26 26 A E S > S+ 0 0 59 1,-0.2 4,-2.7 -18,-0.2 -1,-0.2 -0.526 114.1 64.1 67.7 -44.3 -1.3 7.0 -7.5 27 27 A G H > S+ 0 0 48 -2,-2.4 4,-3.3 1,-0.2 -1,-0.2 0.939 102.2 50.1 -53.8 -47.2 0.1 3.6 -8.2 28 28 A C H > S+ 0 0 0 2,-0.2 4,-2.6 1,-0.2 -1,-0.2 0.910 109.0 46.4 -63.4 -50.3 -0.9 2.8 -4.6 29 29 A K H > S+ 0 0 33 2,-0.2 4,-2.2 1,-0.2 5,-0.3 0.930 115.5 49.8 -59.3 -38.0 -4.5 4.2 -4.7 30 30 A G H X S+ 0 0 25 -4,-2.7 4,-2.8 1,-0.2 -2,-0.2 0.977 114.4 43.8 -57.1 -55.8 -4.8 2.1 -8.0 31 31 A F H X S+ 0 0 23 -4,-3.3 4,-2.8 2,-0.2 5,-0.3 0.833 109.3 59.5 -52.3 -34.9 -3.3 -0.9 -6.2 32 32 A F H X S+ 0 0 0 -4,-2.6 4,-1.8 1,-0.2 5,-0.3 0.975 114.0 33.3 -74.2 -55.2 -5.6 -0.2 -3.2 33 33 A R H <>S+ 0 0 97 -4,-2.2 5,-1.3 3,-0.2 4,-0.5 0.883 112.9 64.3 -63.3 -35.4 -8.8 -0.5 -5.2 34 34 A R H X>S+ 0 0 101 -4,-2.8 5,-1.8 -5,-0.3 4,-0.8 0.957 118.1 24.4 -58.0 -52.0 -7.3 -3.2 -7.4 35 35 A S H X>S+ 0 0 0 -4,-2.8 4,-1.7 3,-0.2 5,-1.0 0.976 133.2 35.5 -68.0 -67.0 -7.0 -5.5 -4.5 36 36 A I H <5S+ 0 0 6 -4,-1.8 4,-0.5 -5,-0.3 -3,-0.2 0.824 119.2 41.9 -61.9 -52.1 -9.6 -4.3 -2.1 37 37 A Q H 45S- 0 0 71 -4,-0.5 -1,-0.3 -5,-0.3 -3,-0.2 0.761 137.8 -5.4 -67.1 -43.1 -12.5 -3.1 -4.3 38 38 A K H < - 0 0 72 -2,-0.2 3,-1.7 -4,-0.0 -2,-0.2 -0.935 43.5-101.3-136.8 167.7 5.1 -13.4 2.6 48 48 A K T 3 S+ 0 0 114 1,-0.3 -4,-0.0 -2,-0.3 -3,-0.0 0.313 119.4 63.7 -90.8 23.7 4.0 -10.7 5.2 49 49 A N T 3 + 0 0 103 2,-0.1 2,-0.5 0, 0.0 -1,-0.3 0.027 67.8 144.1-115.4 11.1 7.6 -9.4 5.5 50 50 A C < - 0 0 0 -3,-1.7 2,-0.3 1,-0.1 10,-0.2 -0.550 53.3-125.0 -53.0 113.8 7.4 -8.3 1.8 51 51 A V + 0 0 57 -2,-0.5 6,-2.7 8,-0.1 2,-0.4 -0.491 39.0 170.4-104.0 125.5 9.4 -5.2 2.2 52 52 A I + 0 0 0 -2,-0.3 2,-0.2 4,-0.2 -40,-0.1 -0.869 43.0 91.3-139.2 100.1 8.7 -1.6 1.4 53 53 A N S S- 0 0 37 -2,-0.4 -50,-0.1 -52,-0.1 3,-0.0 -0.223 99.9 -72.4-117.8-125.4 10.7 1.3 2.4 54 54 A K S S+ 0 0 15 -53,-1.0 -51,-0.1 -52,-0.8 -2,-0.1 -0.074 122.0 65.8-132.8 51.3 13.3 2.0 -0.4 55 55 A V S S+ 0 0 112 -53,-0.1 -1,-0.1 -4,-0.0 -3,-0.1 0.402 109.5 40.3-113.2 -2.7 16.0 -0.8 -0.3 56 56 A T + 0 0 27 -55,-0.2 -4,-0.2 2,-0.1 3,-0.1 0.775 41.3 174.1-120.4-146.6 13.3 -3.1 -1.2 57 57 A R + 0 0 99 -6,-2.7 2,-0.2 1,-0.4 -5,-0.1 0.894 23.6 150.0 58.8 91.6 10.2 -4.4 -3.1 58 58 A N - 0 0 75 -7,-0.1 -1,-0.4 -9,-0.0 2,-0.4 -0.890 44.7-176.5 56.2 42.5 9.4 -7.3 -2.5 59 59 A R + 0 0 52 -2,-0.2 2,-0.3 -3,-0.1 -8,-0.1 -0.887 15.3 140.7-118.8 144.3 5.9 -5.9 -3.2 60 60 A C > - 0 0 14 -2,-0.4 4,-0.6 1,-0.3 -14,-0.1 -0.907 50.3 -85.1-158.2 176.7 2.5 -7.7 -3.0 61 61 A Q H >> S+ 0 0 45 -2,-0.3 4,-2.3 -16,-0.2 3,-0.6 0.928 105.6 28.2 -57.5 -96.4 -1.1 -7.2 -1.9 62 62 A Y H 3> S+ 0 0 83 1,-0.2 4,-3.1 2,-0.2 3,-0.5 0.758 114.2 60.5 -50.2 -45.4 -2.0 -7.8 1.8 63 63 A C H 3> S+ 0 0 0 1,-0.3 4,-1.5 2,-0.2 -1,-0.2 0.803 121.8 20.9 -44.1 -58.5 1.4 -7.0 3.2 64 64 A R H < S+ 0 0 45 -4,-1.5 3,-1.1 -5,-0.3 4,-0.4 0.924 115.5 46.0 -74.7 -40.3 1.3 -1.1 5.6 68 68 A C H >< S+ 0 0 0 -4,-1.6 3,-2.0 1,-0.2 5,-0.3 0.952 109.3 59.5 -61.6 -39.2 -0.2 1.5 3.3 69 69 A F G >< S+ 0 0 50 -4,-3.6 3,-1.0 1,-0.3 -1,-0.2 0.564 81.7 79.6 -55.0 -25.2 -3.3 1.0 5.5 70 70 A E G < S+ 0 0 148 -3,-1.1 2,-0.3 1,-0.3 -1,-0.3 0.781 99.1 44.4 -54.6 -23.7 -1.2 2.1 8.6 71 71 A V G < S- 0 0 44 -3,-2.0 2,-0.5 -4,-0.4 -1,-0.3 -0.692 117.4-128.4-116.4 51.2 -2.0 5.5 7.1 72 72 A G < - 0 0 43 -3,-1.0 -3,-0.2 -2,-0.3 -2,-0.1 0.074 32.5-172.7 -13.0 76.4 -5.6 4.3 6.6 73 73 A M - 0 0 1 -2,-0.5 2,-0.7 -5,-0.3 -52,-0.2 -0.320 28.9-110.5 -73.6 144.4 -6.2 5.2 3.0 74 74 A S S S+ 0 0 34 -54,-0.4 2,-0.4 -2,-0.1 -1,-0.1 -0.395 93.1 101.0-109.7 64.4 -9.7 4.8 1.9 75 75 A K S S+ 0 0 6 -2,-0.7 -39,-0.1 -55,-0.1 -2,-0.1 -0.963 70.7 156.3 -96.8 103.2 -9.9 2.1 -0.3 76 76 A E - 0 0 122 -2,-0.4 2,-0.7 1,-0.1 -1,-0.1 0.850 62.9 -16.6-109.4 -99.8 -11.1 1.0 3.0 77 77 A S S > S- 0 0 77 3,-0.1 3,-0.9 -3,-0.1 2,-0.4 -0.784 103.0-142.3-108.3 76.3 -13.4 -1.9 3.5 78 78 A V T 3 - 0 0 9 -2,-0.7 -3,-0.1 1,-0.4 -4,-0.0 -0.754 55.1 -29.4-111.1 124.6 -14.0 -1.4 -0.2 79 79 A R T 3 0 0 183 -2,-0.4 -1,-0.4 1,-0.1 -42,-0.0 -0.389 360.0 360.0-110.4 64.9 -16.5 -1.7 -1.4 80 80 A N < 0 0 148 -3,-0.9 -3,-0.1 0, 0.0 -1,-0.1 -0.687 360.0 360.0-129.4 360.0 -17.7 -4.3 1.1