==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=4-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER DNA BINDING PROTEIN/DNA 09-MAY-95 1HRY . COMPND 2 MOLECULE: DNA (5'-D(*GP*CP*AP*CP*AP*AP*AP*C)-3'); . SOURCE 2 SYNTHETIC: YES; . AUTHOR G.M.CLORE,M.H.WERNER,J.R.HUTH,A.M.GRONENBORN . 73 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 7385.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 56 76.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 3 4.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 10 13.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 41 56.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 2 2.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 3 A D 0 0 175 0, 0.0 2,-0.3 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0-101.3 17.5 -9.0 -4.9 2 4 A R - 0 0 218 70,-0.0 2,-0.2 1,-0.0 3,-0.0 -0.573 360.0-141.9 -76.9 133.6 14.1 -8.8 -6.7 3 5 A V - 0 0 36 -2,-0.3 2,-0.1 1,-0.1 -1,-0.0 -0.566 29.9 -98.2 -88.5 156.3 12.0 -12.0 -6.5 4 6 A K - 0 0 120 -2,-0.2 -1,-0.1 59,-0.0 0, 0.0 -0.412 39.3-165.9 -72.6 151.8 10.1 -13.0 -9.7 5 7 A R - 0 0 144 -2,-0.1 3,-0.1 -3,-0.0 55,-0.1 -0.966 11.7-138.4-142.5 124.0 6.4 -12.0 -9.7 6 8 A P - 0 0 49 0, 0.0 2,-0.0 0, 0.0 54,-0.0 0.031 54.6 -57.4 -66.8-173.1 3.7 -13.3 -12.1 7 9 A M - 0 0 118 1,-0.1 2,-0.3 4,-0.1 0, 0.0 -0.347 61.1-116.0 -64.9 147.3 1.1 -11.0 -13.7 8 10 A N > - 0 0 93 1,-0.1 4,-2.7 -3,-0.1 3,-0.3 -0.645 24.2-111.3 -86.5 143.7 -0.9 -9.1 -11.0 9 11 A A H > S+ 0 0 39 -2,-0.3 4,-1.0 1,-0.2 -1,-0.1 0.781 121.9 55.8 -44.0 -22.4 -4.7 -9.8 -10.9 10 12 A F H >> S+ 0 0 108 2,-0.2 4,-1.4 1,-0.2 3,-0.6 0.963 106.6 43.2 -78.6 -53.6 -4.9 -6.2 -12.2 11 13 A I H 3> S+ 0 0 67 -3,-0.3 4,-2.7 1,-0.2 -2,-0.2 0.854 102.1 73.0 -63.1 -25.1 -2.7 -6.6 -15.3 12 14 A V H 3X S+ 0 0 28 -4,-2.7 4,-1.3 1,-0.2 5,-0.4 0.968 97.3 47.6 -52.1 -50.5 -4.6 -9.9 -15.9 13 15 A W H S+ 0 0 29 -4,-1.0 4,-2.0 -3,-0.6 5,-1.1 0.979 106.7 58.2 -52.5 -55.5 -7.6 -7.8 -16.9 14 16 A S H X>S+ 0 0 34 -4,-1.4 4,-0.9 3,-0.2 5,-0.6 0.917 102.4 55.3 -39.5 -57.9 -5.2 -5.7 -19.1 15 17 A R H X5S+ 0 0 160 -4,-2.7 4,-0.9 1,-0.2 -1,-0.2 0.926 130.6 8.0 -41.1 -77.0 -4.3 -8.9 -21.0 16 18 A D H X5S+ 0 0 117 -4,-1.3 4,-1.3 2,-0.2 -2,-0.2 0.940 130.0 53.7 -77.5 -50.3 -7.8 -10.0 -22.1 17 19 A Q H >X5S+ 0 0 27 -4,-2.0 4,-1.3 -5,-0.4 3,-1.0 0.954 110.5 48.5 -51.0 -51.8 -10.0 -7.0 -21.0 18 20 A R H 3X S+ 0 0 81 1,-0.2 4,-1.0 2,-0.1 3,-0.2 -0.438 78.9 132.3 -91.6 61.2 -4.5 7.2 -21.8 32 34 A E H > + 0 0 103 -2,-1.3 4,-2.9 1,-0.2 5,-0.3 0.919 60.0 67.4 -80.4 -43.7 -8.3 6.9 -21.4 33 35 A I H > S+ 0 0 44 -3,-0.4 4,-1.1 1,-0.2 -1,-0.2 0.738 100.8 58.3 -48.8 -15.6 -8.4 3.0 -21.3 34 36 A S H > S+ 0 0 61 -3,-0.2 4,-1.3 2,-0.2 -1,-0.2 0.968 110.2 34.1 -80.9 -60.7 -6.6 3.8 -17.9 35 37 A K H X S+ 0 0 157 -4,-1.0 4,-1.2 1,-0.2 -2,-0.2 0.809 115.0 63.0 -65.4 -25.9 -9.2 6.0 -16.1 36 38 A Q H >X S+ 0 0 103 -4,-2.9 4,-1.4 1,-0.2 3,-0.7 0.954 98.7 51.2 -66.5 -46.5 -11.9 3.9 -17.8 37 39 A L H 3X S+ 0 0 21 -4,-1.1 4,-2.1 -5,-0.3 -1,-0.2 0.909 101.1 64.6 -58.7 -34.8 -10.8 0.6 -16.1 38 40 A G H 3X S+ 0 0 22 -4,-1.3 4,-1.6 1,-0.3 -1,-0.3 0.928 99.4 52.7 -53.9 -40.7 -11.0 2.6 -12.9 39 41 A Y H < S+ 0 0 44 -4,-1.4 3,-0.9 1,-0.2 -1,-0.2 0.883 102.8 59.4 -63.1 -34.9 -15.0 -0.9 -14.0 41 43 A W H >< S+ 0 0 67 -4,-2.1 3,-0.8 1,-0.3 -1,-0.2 0.933 100.7 52.0 -62.3 -42.9 -13.3 -1.3 -10.5 42 44 A K H 3< S+ 0 0 166 -4,-1.6 -1,-0.3 1,-0.3 -2,-0.2 0.698 127.4 28.2 -68.0 -10.0 -16.1 0.7 -8.8 43 45 A M T << S- 0 0 94 -3,-0.9 -1,-0.3 -4,-0.6 -2,-0.1 -0.528 86.0-165.1-146.1 70.6 -18.4 -1.8 -10.6 44 46 A L < - 0 0 73 -3,-0.8 2,-0.6 1,-0.1 -3,-0.1 -0.376 21.8-126.4 -61.9 132.1 -16.4 -5.1 -11.2 45 47 A T >> - 0 0 44 1,-0.2 3,-2.0 -2,-0.1 4,-1.4 -0.689 9.2-151.3 -82.4 117.8 -18.2 -7.3 -13.8 46 48 A E H 3> S+ 0 0 157 -2,-0.6 4,-0.7 1,-0.3 -1,-0.2 0.816 93.0 72.0 -59.0 -27.3 -18.7 -10.8 -12.2 47 49 A A H 34 S+ 0 0 70 1,-0.2 -1,-0.3 2,-0.1 -2,-0.0 0.796 108.4 34.1 -59.4 -24.9 -18.5 -12.2 -15.8 48 50 A E H <> S+ 0 0 66 -3,-2.0 4,-0.8 3,-0.1 5,-0.3 0.679 113.9 59.9-102.2 -24.6 -14.7 -11.5 -15.6 49 51 A K H X S+ 0 0 76 -4,-1.4 4,-2.3 2,-0.1 5,-0.3 0.990 102.7 42.3 -69.3 -78.7 -14.1 -12.1 -11.9 50 52 A W H X S+ 0 0 195 -4,-0.7 4,-1.4 1,-0.2 -1,-0.1 0.854 109.7 60.6 -37.3 -55.2 -14.9 -15.8 -11.2 51 53 A P H > S+ 0 0 67 0, 0.0 4,-0.6 0, 0.0 3,-0.3 0.927 120.0 18.1 -42.2 -76.6 -13.3 -17.1 -14.4 52 54 A F H X S+ 0 0 40 -4,-0.8 4,-2.4 1,-0.2 5,-0.2 0.700 111.3 75.1 -79.2 -15.0 -9.6 -16.0 -14.0 53 55 A F H X S+ 0 0 73 -4,-2.3 4,-1.5 -5,-0.3 -1,-0.2 0.931 89.5 59.7 -63.4 -39.3 -9.7 -15.4 -10.1 54 56 A Q H X S+ 0 0 98 -4,-1.4 4,-0.9 -3,-0.3 3,-0.3 0.948 111.8 39.6 -53.6 -47.0 -9.7 -19.2 -9.5 55 57 A E H >X S+ 0 0 120 -4,-0.6 4,-1.8 1,-0.2 3,-0.6 0.976 108.9 58.8 -67.5 -53.3 -6.3 -19.5 -11.3 56 58 A A H 3X S+ 0 0 22 -4,-2.4 4,-1.4 1,-0.2 5,-0.2 0.768 97.6 67.5 -49.0 -22.5 -4.8 -16.3 -9.9 57 59 A Q H 3X S+ 0 0 136 -4,-1.5 4,-2.1 -3,-0.3 -1,-0.2 0.987 105.3 35.8 -65.0 -57.5 -5.3 -17.8 -6.5 58 60 A K H X S+ 0 0 45 -4,-1.4 4,-0.8 -5,-0.3 3,-0.8 0.882 115.8 58.1 -55.0 -34.9 5.5 -18.4 -5.4 64 66 A R H >< S+ 0 0 153 -4,-2.7 3,-1.2 -5,-0.4 -1,-0.2 0.940 102.0 52.4 -61.2 -46.2 4.4 -16.9 -2.1 65 67 A E H 3< S+ 0 0 152 -4,-1.9 -1,-0.3 -3,-0.4 -2,-0.2 0.692 105.1 57.7 -66.8 -13.7 5.2 -20.1 -0.2 66 68 A K H << S+ 0 0 134 -4,-0.9 -1,-0.3 -3,-0.8 -2,-0.2 0.697 115.6 33.8 -87.0 -20.7 8.7 -20.0 -1.8 67 69 A Y S << S+ 0 0 90 -3,-1.2 -1,-0.2 -4,-0.8 -2,-0.1 -0.327 70.1 151.5-131.7 54.9 9.4 -16.5 -0.3 68 70 A P S S+ 0 0 90 0, 0.0 -1,-0.1 0, 0.0 -2,-0.1 0.962 83.5 18.0 -50.3 -70.1 7.6 -16.3 3.1 69 71 A N S S+ 0 0 140 2,-0.1 2,-0.5 0, 0.0 -2,-0.1 0.620 99.0 106.4 -84.7 -10.0 9.9 -13.8 5.0 70 72 A Y + 0 0 110 -4,-0.0 2,-0.3 1,-0.0 -3,-0.1 -0.556 52.5 176.2 -70.9 121.3 11.6 -12.4 1.8 71 73 A K - 0 0 159 -2,-0.5 -2,-0.1 1,-0.2 -68,-0.0 -0.781 36.3 -79.9-122.6 169.5 10.1 -8.9 1.4 72 74 A Y 0 0 187 -2,-0.3 -1,-0.2 1,-0.1 -70,-0.0 -0.104 360.0 360.0 -59.9 165.7 10.6 -6.0 -1.0 73 75 A R 0 0 281 0, 0.0 -1,-0.1 0, 0.0 -71,-0.0 -0.140 360.0 360.0-141.0 360.0 13.6 -3.7 -0.1